Class: Bio::FlatFileIndex::Indexer::Parser::SPTRParser

Inherits:

EMBLParser

• Object
• TemplateParser
• EMBLParser
• Bio::FlatFileIndex::Indexer::Parser::SPTRParser

Defined in:

lib/bio/io/flatfile/indexer.rb

Overview

class EMBLParser

Constant Summary

SECONDARY =

[ 'AC' ]

Constants inherited from EMBLParser

EMBLParser::NAMESTYLE, EMBLParser::PRIMARY

Constants inherited from TemplateParser

TemplateParser::NAMESTYLE

Instance Attribute Summary

Attributes inherited from TemplateParser

#dbclass, #errorlog, #fileid, #format, #primary, #secondary

Instance Method Summary

• #initialize(*arg) ⇒ SPTRParser constructor

  A new instance of SPTRParser.

Methods inherited from TemplateParser

#add_secondary_namespaces, #close_flatfile, #each, #open_flatfile, #parse_primary, #parse_secondary, #set_primary_namespace

Constructor Details

#initialize(*arg) ⇒ SPTRParser

Returns a new instance of SPTRParser.

# File 'lib/bio/io/flatfile/indexer.rb', line 233

def initialize(*arg)
  super(*arg)
  self.format = 'swiss'
  self.dbclass = Bio::SPTR
end