Class: Bio::Hinv::KeywordSearch

Inherits:
Object
  • Object
show all
Includes:
Common
Defined in:
lib/bio/io/hinv.rb

Overview

serv = Bio::Hinv::KeywordSearch.new serv.query("query" => "HIT00002218*", "start" => 1, "end" => 100) puts serv.result puts serv.size puts serv.start puts serv.end

Direct Known Subclasses

IdSearch

Instance Method Summary collapse

Constructor Details

#initialize ⇒ KeywordSearch

Returns a new instance of KeywordSearch.



371
372
373
 
# File 'lib/bio/io/hinv.rb', line 371

def initialize
  @url = BASE_URI + "keyword_search.php"
end

Instance Method Details

#end ⇒ Object 



413
414
415
 
# File 'lib/bio/io/hinv.rb', line 413

def end
  @xml.elements['//END'].text.to_i
end

#query(hash = {}) ⇒ Object 



375
376
377
378
379
380
381
382
 
# File 'lib/bio/io/hinv.rb', line 375

def query(hash = {})
  default = {
    "start" => 1,
    "end" => 100
  }
  options = default.update(hash)
  super(options)
end

#result ⇒ Object

<HINVDB_SEARCH> HIT00002218* 8 1 8 HIT000022180 HIT000022181 HIT000022183 HIT000022184 HIT000022185 HIT000022186 HIT000022188 HIT000022189 </HINVDB_SEARCH>



399
400
401
402
403
404
405
 
# File 'lib/bio/io/hinv.rb', line 399

def result
  list = []
  @xml.elements.each('//H-INVITATIONAL-ID') do |e|
    list << e.text
  end
  return list
end

#size ⇒ Object 



407
408
409
 
# File 'lib/bio/io/hinv.rb', line 407

def size
  @xml.elements['//SIZE'].text.to_i
end

#start ⇒ Object 



410
411
412
 
# File 'lib/bio/io/hinv.rb', line 410

def start
  @xml.elements['//START'].text.to_i
end