Class: BioInterchange::GOXRef

Inherits:
Object
  • Object
show all
Defined in:
lib/biointerchange/goxref.rb

Class Method Summary collapse

Class Method Details

.AGI_LocusCode ⇒ Object

Returns the link-out URI for objects of “Arabidopsis Genome Initiative”.



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# File 'lib/biointerchange/goxref.rb', line 6

def self.AGI_LocusCode
  RDF::URI.new("http://arabidopsis.org/servlets/TairObject?type=locus&name=")
end

.ApiDB_PlasmoDB ⇒ Object

Returns the link-out URI for objects of “PlasmoDB Plasmodium Genome Resource”.



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# File 'lib/biointerchange/goxref.rb', line 11

def self.ApiDB_PlasmoDB
  RDF::URI.new("http://www.plasmodb.org/gene/")
end

.AraCyc ⇒ Object

Returns the link-out URI for objects of “AraCyc metabolic pathway database for Arabidopsis thaliana”.



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# File 'lib/biointerchange/goxref.rb', line 16

def self.AraCyc
  RDF::URI.new("http://www.arabidopsis.org:1555/ARA/NEW-IMAGE?type=NIL&object=")
end

.ASAP ⇒ Object

Returns the link-out URI for objects of “A Systematic Annotation Package for Community Analysis of Genomes”.



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# File 'lib/biointerchange/goxref.rb', line 21

def self.ASAP
  RDF::URI.new("https://asap.ahabs.wisc.edu/annotation/php/feature_info.php?FeatureID=")
end

.AspGD ⇒ Object

Returns the link-out URI for objects of “Aspergillus Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 26

def self.AspGD
  RDF::URI.new("http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=")
end

.AspGD_LOCUS ⇒ Object

Returns the link-out URI for objects of “Aspergillus Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 31

def self.AspGD_LOCUS
  RDF::URI.new("http://www.aspergillusgenome.org/cgi-bin/locus.pl?locus=")
end

.AspGD_REF ⇒ Object

Returns the link-out URI for objects of “Aspergillus Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 36

def self.AspGD_REF
  RDF::URI.new("http://www.aspergillusgenome.org/cgi-bin/reference/reference.pl?dbid=")
end

.BFO ⇒ Object

Returns the link-out URI for objects of “Basic Formal Ontology”.



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# File 'lib/biointerchange/goxref.rb', line 41

def self.BFO
  RDF::URI.new("http://purl.obolibrary.org/obo/BFO_")
end

.BioCyc ⇒ Object

Returns the link-out URI for objects of “BioCyc collection of metabolic pathway databases”.



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# File 'lib/biointerchange/goxref.rb', line 46

def self.BioCyc
  RDF::URI.new("http://biocyc.org/META/NEW-IMAGE?type=PATHWAY&object=")
end

.BIOMD ⇒ Object

Returns the link-out URI for objects of “BioModels Database”.



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# File 'lib/biointerchange/goxref.rb', line 51

def self.BIOMD
  RDF::URI.new("http://www.ebi.ac.uk/compneur-srv/biomodels-main/publ-model.do?mid=")
end

.BRENDA ⇒ Object

Returns the link-out URI for objects of “BRENDA, The Comprehensive Enzyme Information System”.



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# File 'lib/biointerchange/goxref.rb', line 56

def self.BRENDA
  RDF::URI.new("http://www.brenda-enzymes.info/php/result_flat.php4?ecno=")
end

.Broad_MGG ⇒ Object

Returns the link-out URI for objects of “Magnaporthe grisea Database”.



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# File 'lib/biointerchange/goxref.rb', line 61

def self.Broad_MGG
  RDF::URI.new("http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/GeneLocus.html?sp=S")
end

.CASGEN ⇒ Object

Returns the link-out URI for objects of “Catalog of Fishes genus database”.



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# File 'lib/biointerchange/goxref.rb', line 66

def self.CASGEN
  RDF::URI.new("http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Genus&id=")
end

.CASREF ⇒ Object

Returns the link-out URI for objects of “Catalog of Fishes publications database”.



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# File 'lib/biointerchange/goxref.rb', line 71

def self.CASREF
  RDF::URI.new("http://research.calacademy.org/research/ichthyology/catalog/getref.asp?id=")
end

.CASSPC ⇒ Object

Returns the link-out URI for objects of “Catalog of Fishes species database”.



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# File 'lib/biointerchange/goxref.rb', line 76

def self.CASSPC
  RDF::URI.new("http://research.calacademy.org/research/ichthyology/catalog/getname.asp?rank=Species&id=1979")
end

.CDD ⇒ Object

Returns the link-out URI for objects of “Conserved Domain Database at NCBI”.



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# File 'lib/biointerchange/goxref.rb', line 81

def self.CDD
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=")
end

.CGD ⇒ Object

Returns the link-out URI for objects of “Candida Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 86

def self.CGD
  RDF::URI.new("http://www.candidagenome.org/cgi-bin/locus.pl?dbid=")
end

.CGD_LOCUS ⇒ Object

Returns the link-out URI for objects of “Candida Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 91

def self.CGD_LOCUS
  RDF::URI.new("http://www.candidagenome.org/cgi-bin/locus.pl?locus=")
end

.CGD_REF ⇒ Object

Returns the link-out URI for objects of “Candida Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 96

def self.CGD_REF
  RDF::URI.new("http://www.candidagenome.org/cgi-bin/reference/reference.pl?dbid=")
end

.CHEBI ⇒ Object

Returns the link-out URI for objects of “Chemical Entities of Biological Interest”.



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# File 'lib/biointerchange/goxref.rb', line 101

def self.CHEBI
  RDF::URI.new("http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:")
end

.CL ⇒ Object

Returns the link-out URI for objects of “Cell Type Ontology”.



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# File 'lib/biointerchange/goxref.rb', line 106

def self.CL
  RDF::URI.new("http://purl.obolibrary.org/obo/CL_")
end

.COG_Cluster ⇒ Object

Returns the link-out URI for objects of “NCBI COG cluster”.



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# File 'lib/biointerchange/goxref.rb', line 111

def self.COG_Cluster
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/COG/new/release/cow.cgi?cog=")
end

.COG_Function ⇒ Object

Returns the link-out URI for objects of “NCBI COG function”.



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# File 'lib/biointerchange/goxref.rb', line 116

def self.COG_Function
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/COG/grace/shokog.cgi?fun=")
end

.COG_Pathway ⇒ Object

Returns the link-out URI for objects of “NCBI COG pathway”.



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# File 'lib/biointerchange/goxref.rb', line 121

def self.COG_Pathway
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?pathw=")
end

.CORUM ⇒ Object

Returns the link-out URI for objects of “CORUM - the Comprehensive Resource of Mammalian protein complexes”.



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# File 'lib/biointerchange/goxref.rb', line 126

def self.CORUM
  RDF::URI.new("http://mips.gsf.de/genre/proj/corum/complexdetails.html?id=")
end

.dbSNP ⇒ Object

Returns the link-out URI for objects of “NCBI dbSNP”.



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# File 'lib/biointerchange/goxref.rb', line 131

def self.dbSNP
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=")
end

.DDBJ ⇒ Object

Returns the link-out URI for objects of “DNA Databank of Japan”.



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# File 'lib/biointerchange/goxref.rb', line 136

def self.DDBJ
  RDF::URI.new("http://arsa.ddbj.nig.ac.jp/arsa/ddbjSplSearch?KeyWord=")
end

.dictyBase ⇒ Object

Returns the link-out URI for objects of “dictyBase”.



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# File 'lib/biointerchange/goxref.rb', line 141

def self.dictyBase
  RDF::URI.new("http://dictybase.org/gene/")
end

.dictyBase_gene_name ⇒ Object

Returns the link-out URI for objects of “dictyBase”.



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# File 'lib/biointerchange/goxref.rb', line 146

def self.dictyBase_gene_name
  RDF::URI.new("http://dictybase.org/gene/")
end

.dictyBase_REF ⇒ Object

Returns the link-out URI for objects of “dictyBase literature references”.



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# File 'lib/biointerchange/goxref.rb', line 151

def self.dictyBase_REF
  RDF::URI.new("http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo=")
end

.DOI ⇒ Object

Returns the link-out URI for objects of “Digital Object Identifier”.



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# File 'lib/biointerchange/goxref.rb', line 156

def self.DOI
  RDF::URI.new("http://dx.doi.org/DOI:")
end

.EC ⇒ Object

Returns the link-out URI for objects of “Enzyme Commission”.



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# File 'lib/biointerchange/goxref.rb', line 161

def self.EC
  RDF::URI.new("http://www.expasy.org/enzyme/")
end

.EchoBASE ⇒ Object

Returns the link-out URI for objects of “EchoBASE post-genomic database for Escherichia coli”.



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# File 'lib/biointerchange/goxref.rb', line 166

def self.EchoBASE
  RDF::URI.new("http://www.biolws1.york.ac.uk/echobase/Gene.cfm?recordID=")
end

.ECK ⇒ Object

Returns the link-out URI for objects of “EcoGene Database of Escherichia coli Sequence and Function”.



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# File 'lib/biointerchange/goxref.rb', line 171

def self.ECK
  RDF::URI.new("http://www.ecogene.org/geneInfo.php?eck_id=")
end

.EcoCyc ⇒ Object

Returns the link-out URI for objects of “Encyclopedia of E. coli metabolism”.



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# File 'lib/biointerchange/goxref.rb', line 176

def self.EcoCyc
  RDF::URI.new("http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=")
end

.EcoCyc_REF ⇒ Object

Returns the link-out URI for objects of “Encyclopedia of E. coli metabolism”.



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# File 'lib/biointerchange/goxref.rb', line 181

def self.EcoCyc_REF
  RDF::URI.new("http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=")
end

.ECOGENE ⇒ Object

Returns the link-out URI for objects of “EcoGene Database of Escherichia coli Sequence and Function”.



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# File 'lib/biointerchange/goxref.rb', line 186

def self.ECOGENE
  RDF::URI.new("http://www.ecogene.org/geneInfo.php?eg_id=")
end

.EMBL ⇒ Object

Returns the link-out URI for objects of “EMBL Nucleotide Sequence Database”.



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# File 'lib/biointerchange/goxref.rb', line 191

def self.EMBL
  RDF::URI.new("http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=")
end

.ENA ⇒ Object

Returns the link-out URI for objects of “European Nucleotide Archive”.



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# File 'lib/biointerchange/goxref.rb', line 196

def self.ENA
  RDF::URI.new("http://www.ebi.ac.uk/ena/data/view/")
end

.ENSEMBL ⇒ Object

Returns the link-out URI for objects of “Ensembl database of automatically annotated genomic data”.



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# File 'lib/biointerchange/goxref.rb', line 201

def self.ENSEMBL
  RDF::URI.new("http://www.ensembl.org/id/")
end

.ENSEMBL_GeneID ⇒ Object

Returns the link-out URI for objects of “Ensembl database of automatically annotated genomic data”.



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# File 'lib/biointerchange/goxref.rb', line 206

def self.ENSEMBL_GeneID
  RDF::URI.new("http://www.ensembl.org/id/")
end

.ENSEMBL_ProteinID ⇒ Object

Returns the link-out URI for objects of “Ensembl database of automatically annotated genomic data”.



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# File 'lib/biointerchange/goxref.rb', line 211

def self.ENSEMBL_ProteinID
  RDF::URI.new("http://www.ensembl.org/id/")
end

.ENSEMBL_TranscriptID ⇒ Object

Returns the link-out URI for objects of “Ensembl database of automatically annotated genomic data”.



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# File 'lib/biointerchange/goxref.rb', line 216

def self.ENSEMBL_TranscriptID
  RDF::URI.new("http://www.ensembl.org/id/")
end

.ENZYME ⇒ Object

Returns the link-out URI for objects of “Swiss Institute of Bioinformatics enzyme database”.



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# File 'lib/biointerchange/goxref.rb', line 221

def self.ENZYME
  RDF::URI.new("http://www.expasy.ch/cgi-bin/nicezyme.pl?")
end

.FBbt ⇒ Object

Returns the link-out URI for objects of “Drosophila gross anatomy”.



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# File 'lib/biointerchange/goxref.rb', line 226

def self.FBbt
  RDF::URI.new("http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:")
end

.GDB ⇒ Object

Returns the link-out URI for objects of “Human Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 231

def self.GDB
  RDF::URI.new("http://www.gdb.org/gdb-bin/genera/accno?accessionNum=GDB:")
end

.GenBank ⇒ Object

Returns the link-out URI for objects of “GenBank”.



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# File 'lib/biointerchange/goxref.rb', line 236

def self.GenBank
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=")
end

.Gene3D ⇒ Object

Returns the link-out URI for objects of “Domain Architecture Classification”.



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# File 'lib/biointerchange/goxref.rb', line 241

def self.Gene3D
  RDF::URI.new("http://gene3d.biochem.ucl.ac.uk/superfamily/?accession=")
end

.GeneDB_Gmorsitans ⇒ Object

Returns the link-out URI for objects of “Glossina morsitans GeneDB”.



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# File 'lib/biointerchange/goxref.rb', line 246

def self.GeneDB_Gmorsitans
  RDF::URI.new("http://www.genedb.org/genedb/Search?organism=glossina&name=")
end

.GeneDB_Lmajor ⇒ Object

Returns the link-out URI for objects of “Leishmania major GeneDB”.



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# File 'lib/biointerchange/goxref.rb', line 251

def self.GeneDB_Lmajor
  RDF::URI.new("http://www.genedb.org/genedb/Search?organism=leish&name=")
end

.GeneDB_Pfalciparum ⇒ Object

Returns the link-out URI for objects of “Plasmodium falciparum GeneDB”.



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# File 'lib/biointerchange/goxref.rb', line 256

def self.GeneDB_Pfalciparum
  RDF::URI.new("http://www.genedb.org/genedb/Search?organism=malaria&name=")
end

.GeneDB_Spombe ⇒ Object

Returns the link-out URI for objects of “Schizosaccharomyces pombe GeneDB”.



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# File 'lib/biointerchange/goxref.rb', line 261

def self.GeneDB_Spombe
  RDF::URI.new("http://old.genedb.org/genedb/Search?organism=pombe&name=")
end

.GeneDB_Tbrucei ⇒ Object

Returns the link-out URI for objects of “Trypanosoma brucei GeneDB”.



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# File 'lib/biointerchange/goxref.rb', line 266

def self.GeneDB_Tbrucei
  RDF::URI.new("http://www.genedb.org/genedb/Search?organism=tryp&name=")
end

.GEO ⇒ Object

Returns the link-out URI for objects of “NCBI Gene Expression Omnibus”.



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# File 'lib/biointerchange/goxref.rb', line 271

def self.GEO
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=")
end

.GO ⇒ Object

Returns the link-out URI for objects of “Gene Ontology Database”.



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# File 'lib/biointerchange/goxref.rb', line 276

def self.GO
  RDF::URI.new("http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:")
end

.GO_REF ⇒ Object

Returns the link-out URI for objects of “Gene Ontology Database references”.



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# File 'lib/biointerchange/goxref.rb', line 281

def self.GO_REF
  RDF::URI.new("http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:")
end

.GONUTS ⇒ Object

Returns the link-out URI for objects of “Gene Ontology Normal Usage Tracking System (GONUTS)”.



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# File 'lib/biointerchange/goxref.rb', line 286

def self.GONUTS
  RDF::URI.new("http://gowiki.tamu.edu/wiki/index.php/")
end

.GR ⇒ Object

Returns the link-out URI for objects of “Gramene: A Comparative Mapping Resource for Grains”.



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# File 'lib/biointerchange/goxref.rb', line 291

def self.GR
  RDF::URI.new("http://www.gramene.org/db/searches/browser?search_type=All&RGN=on&query=")
end

.GR_GENE ⇒ Object

Returns the link-out URI for objects of “Gramene: A Comparative Mapping Resource for Grains”.



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# File 'lib/biointerchange/goxref.rb', line 296

def self.GR_GENE
  RDF::URI.new("http://www.gramene.org/db/genes/search_gene?acc=")
end

.GR_PROTEIN ⇒ Object

Returns the link-out URI for objects of “Gramene: A Comparative Mapping Resource for Grains”.



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# File 'lib/biointerchange/goxref.rb', line 301

def self.GR_PROTEIN
  RDF::URI.new("http://www.gramene.org/db/protein/protein_search?acc=")
end

.GR_QTL ⇒ Object

Returns the link-out URI for objects of “Gramene: A Comparative Mapping Resource for Grains”.



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# File 'lib/biointerchange/goxref.rb', line 306

def self.GR_QTL
  RDF::URI.new("http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=")
end

.GR_REF ⇒ Object

Returns the link-out URI for objects of “Gramene: A Comparative Mapping Resource for Grains”.



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# File 'lib/biointerchange/goxref.rb', line 311

def self.GR_REF
  RDF::URI.new("http://www.gramene.org/db/literature/pub_search?ref_id=")
end

.H_invDB_cDNA ⇒ Object

Returns the link-out URI for objects of “H-invitational Database”.



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# File 'lib/biointerchange/goxref.rb', line 316

def self.H_invDB_cDNA
  RDF::URI.new("http://www.h-invitational.jp/hinv/spsoup/transcript_view?acc_id=")
end

.H_invDB_locus ⇒ Object

Returns the link-out URI for objects of “H-invitational Database”.



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# File 'lib/biointerchange/goxref.rb', line 321

def self.H_invDB_locus
  RDF::URI.new("http://www.h-invitational.jp/hinv/spsoup/locus_view?hix_id=")
end

.HAMAP ⇒ Object

Returns the link-out URI for objects of “High-quality Automated and Manual Annotation of microbial Proteomes”.



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# File 'lib/biointerchange/goxref.rb', line 326

def self.HAMAP
  RDF::URI.new("http://us.expasy.org/unirules/")
end

.HGNC ⇒ Object

Returns the link-out URI for objects of “HUGO Gene Nomenclature Committee”.



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# File 'lib/biointerchange/goxref.rb', line 331

def self.HGNC
  RDF::URI.new("http://www.genenames.org/data/hgnc_data.php?hgnc_id=HGNC:")
end

.HGNC_gene ⇒ Object

Returns the link-out URI for objects of “HUGO Gene Nomenclature Committee”.



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# File 'lib/biointerchange/goxref.rb', line 336

def self.HGNC_gene
  RDF::URI.new("http://www.genenames.org/data/hgnc_data.php?app_sym=")
end

.HPA ⇒ Object

Returns the link-out URI for objects of “Human Protein Atlas tissue profile information”.



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# File 'lib/biointerchange/goxref.rb', line 341

def self.HPA
  RDF::URI.new("http://www.proteinatlas.org/tissue_profile.php?antibody_id=")
end

.HPA_antibody ⇒ Object

Returns the link-out URI for objects of “Human Protein Atlas antibody information”.



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# File 'lib/biointerchange/goxref.rb', line 346

def self.HPA_antibody
  RDF::URI.new("http://www.proteinatlas.org/antibody_info.php?antibody_id=")
end

.IMG ⇒ Object

Returns the link-out URI for objects of “Integrated Microbial Genomes; JGI web site for genome annotation”.



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# File 'lib/biointerchange/goxref.rb', line 351

def self.IMG
  RDF::URI.new("http://img.jgi.doe.gov/cgi-bin/pub/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=")
end

.IntAct ⇒ Object

Returns the link-out URI for objects of “IntAct protein interaction database”.



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# File 'lib/biointerchange/goxref.rb', line 356

def self.IntAct
  RDF::URI.new("http://www.ebi.ac.uk/intact/search/do/search?searchString=")
end

.InterPro ⇒ Object

Returns the link-out URI for objects of “InterPro database of protein domains and motifs”.



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# File 'lib/biointerchange/goxref.rb', line 361

def self.InterPro
  RDF::URI.new("http://www.ebi.ac.uk/interpro/IEntry?ac=")
end

.ISBN ⇒ Object

Returns the link-out URI for objects of “International Standard Book Number”.



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# File 'lib/biointerchange/goxref.rb', line 366

def self.ISBN
  RDF::URI.new("http://my.linkbaton.com/get?lbCC=q&nC=q&genre=book&item=")
end

.IUPHAR_GPCR ⇒ Object

Returns the link-out URI for objects of “International Union of Pharmacology”.



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# File 'lib/biointerchange/goxref.rb', line 371

def self.IUPHAR_GPCR
  RDF::URI.new("http://www.iuphar-db.org/DATABASE/FamilyMenuForward?familyId=")
end

.IUPHAR_RECEPTOR ⇒ Object

Returns the link-out URI for objects of “International Union of Pharmacology”.



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# File 'lib/biointerchange/goxref.rb', line 376

def self.IUPHAR_RECEPTOR
  RDF::URI.new("http://www.iuphar-db.org/DATABASE/ObjectDisplayForward?objectId=")
end

.JCVI_CMR ⇒ Object

Returns the link-out URI for objects of “Comprehensive Microbial Resource at the J. Craig Venter Institute”.



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# File 'lib/biointerchange/goxref.rb', line 381

def self.JCVI_CMR
  RDF::URI.new("http://cmr.jcvi.org/cgi-bin/CMR/shared/GenePage.cgi?locus=")
end

.JCVI_EGAD ⇒ Object

Returns the link-out URI for objects of “Comprehensive Microbial Resource at the J. Craig Venter Institute”.



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# File 'lib/biointerchange/goxref.rb', line 386

def self.JCVI_EGAD
  RDF::URI.new("http://cmr.jcvi.org/cgi-bin/CMR/EgadSearch.cgi?search_string=")
end

.JCVI_GenProp ⇒ Object

Returns the link-out URI for objects of “Genome Properties database at the J. Craig Venter Institute”.



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# File 'lib/biointerchange/goxref.rb', line 391

def self.JCVI_GenProp
  RDF::URI.new("http://cmr.jcvi.org/cgi-bin/CMR/shared/GenomePropDefinition.cgi?prop_acc=")
end

.JCVI_Medtr ⇒ Object

Returns the link-out URI for objects of “Medicago truncatula genome database at the J. Craig Venter Institute ”.



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# File 'lib/biointerchange/goxref.rb', line 396

def self.JCVI_Medtr
  RDF::URI.new("http://medicago.jcvi.org/cgi-bin/medicago/search/shared/ORF_infopage.cgi?orf=")
end

.JCVI_TIGRFAMS ⇒ Object

Returns the link-out URI for objects of “TIGRFAMs HMM collection at the J. Craig Venter Institute”.



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# File 'lib/biointerchange/goxref.rb', line 401

def self.JCVI_TIGRFAMS
  RDF::URI.new("http://search.jcvi.org/search?p&q=")
end

.JSTOR ⇒ Object

Returns the link-out URI for objects of “Digital archive of scholarly articles”.



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# File 'lib/biointerchange/goxref.rb', line 406

def self.JSTOR
  RDF::URI.new("http://www.jstor.org/stable/")
end

.KEGG_ENZYME ⇒ Object

Returns the link-out URI for objects of “KEGG Enzyme Database”.



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# File 'lib/biointerchange/goxref.rb', line 411

def self.KEGG_ENZYME
  RDF::URI.new("http://www.genome.jp/dbget-bin/www_bget?ec:")
end

.KEGG_LIGAND ⇒ Object

Returns the link-out URI for objects of “KEGG LIGAND Database”.



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# File 'lib/biointerchange/goxref.rb', line 416

def self.KEGG_LIGAND
  RDF::URI.new("http://www.genome.jp/dbget-bin/www_bget?cpd:")
end

.KEGG_PATHWAY ⇒ Object

Returns the link-out URI for objects of “KEGG Pathways Database”.



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# File 'lib/biointerchange/goxref.rb', line 421

def self.KEGG_PATHWAY
  RDF::URI.new("http://www.genome.jp/dbget-bin/www_bget?path:")
end

.KEGG_REACTION ⇒ Object

Returns the link-out URI for objects of “KEGG Reaction Database”.



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# File 'lib/biointerchange/goxref.rb', line 426

def self.KEGG_REACTION
  RDF::URI.new("http://www.genome.jp/dbget-bin/www_bget?rn:")
end

.LIFEdb ⇒ Object

Returns the link-out URI for objects of “LifeDB”.



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# File 'lib/biointerchange/goxref.rb', line 431

def self.LIFEdb
  RDF::URI.new("http://www.dkfz.de/LIFEdb/LIFEdb.aspx?ID=")
end

.MA ⇒ Object

Returns the link-out URI for objects of “Adult Mouse Anatomical Dictionary”.



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# File 'lib/biointerchange/goxref.rb', line 436

def self.MA
  RDF::URI.new("http://www.informatics.jax.org/searches/AMA.cgi?id=MA:")
end

.MaizeGDB ⇒ Object

Returns the link-out URI for objects of “MaizeGDB”.



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# File 'lib/biointerchange/goxref.rb', line 441

def self.MaizeGDB
  RDF::URI.new("http://www.maizegdb.org/cgi-bin/id_search.cgi?id=")
end

.MaizeGDB_Locus ⇒ Object

Returns the link-out URI for objects of “MaizeGDB”.



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# File 'lib/biointerchange/goxref.rb', line 446

def self.MaizeGDB_Locus
  RDF::URI.new("http://www.maizegdb.org/cgi-bin/displaylocusresults.cgi?term=")
end

.MEROPS ⇒ Object

Returns the link-out URI for objects of “MEROPS peptidase database”.



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# File 'lib/biointerchange/goxref.rb', line 451

def self.MEROPS
  RDF::URI.new("http://merops.sanger.ac.uk/cgi-bin/pepsum?mid=")
end

.MEROPS_fam ⇒ Object

Returns the link-out URI for objects of “MEROPS peptidase database”.



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# File 'lib/biointerchange/goxref.rb', line 456

def self.MEROPS_fam
  RDF::URI.new("http://merops.sanger.ac.uk/cgi-bin/famsum?family=")
end

.MeSH ⇒ Object

Returns the link-out URI for objects of “Medical Subject Headings”.



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# File 'lib/biointerchange/goxref.rb', line 461

def self.MeSH
  RDF::URI.new("http://www.nlm.nih.gov/cgi/mesh/2005/MB_cgi?mode=&term=")
end

.MetaCyc ⇒ Object

Returns the link-out URI for objects of “Metabolic Encyclopedia of metabolic and other pathways”.



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# File 'lib/biointerchange/goxref.rb', line 466

def self.MetaCyc
  RDF::URI.new("http://biocyc.org/META/NEW-IMAGE?type=NIL&object=")
end

.MGI ⇒ Object

Returns the link-out URI for objects of “Mouse Genome Informatics”.



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# File 'lib/biointerchange/goxref.rb', line 471

def self.MGI
  RDF::URI.new("http://www.informatics.jax.org/accession/")
end

.MIPS_funcat ⇒ Object

Returns the link-out URI for objects of “MIPS Functional Catalogue”.



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# File 'lib/biointerchange/goxref.rb', line 476

def self.MIPS_funcat
  RDF::URI.new("http://mips.gsf.de/cgi-bin/proj/funcatDB/search_advanced.pl?action=2&wert=")
end

.MO ⇒ Object

Returns the link-out URI for objects of “MGED Ontology”.



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# File 'lib/biointerchange/goxref.rb', line 481

def self.MO
  RDF::URI.new("http://mged.sourceforge.net/ontologies/MGEDontology.php#")
end

.ModBase ⇒ Object

Returns the link-out URI for objects of “ModBase comprehensive Database of Comparative Protein Structure Models”.



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# File 'lib/biointerchange/goxref.rb', line 486

def self.ModBase
  RDF::URI.new("http://salilab.org/modbase/searchbyid?databaseID=")
end

.NASC_code ⇒ Object

Returns the link-out URI for objects of “Nottingham Arabidopsis Stock Centre Seeds Database”.



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# File 'lib/biointerchange/goxref.rb', line 491

def self.NASC_code
  RDF::URI.new("http://seeds.nottingham.ac.uk/NASC/stockatidb.lasso?code=")
end

.NCBI_Gene ⇒ Object

Returns the link-out URI for objects of “NCBI Gene”.



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# File 'lib/biointerchange/goxref.rb', line 496

def self.NCBI_Gene
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=gene&list_uids=")
end

.NCBI_gi ⇒ Object

Returns the link-out URI for objects of “NCBI databases”.



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# File 'lib/biointerchange/goxref.rb', line 501

def self.NCBI_gi
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=")
end

.NCBI_GP ⇒ Object

Returns the link-out URI for objects of “NCBI GenPept”.



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# File 'lib/biointerchange/goxref.rb', line 506

def self.NCBI_GP
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=")
end

.NIF_Subcellular ⇒ Object

Returns the link-out URI for objects of “Neuroscience Information Framework standard ontology, subcellular hierarchy”.



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# File 'lib/biointerchange/goxref.rb', line 511

def self.NIF_Subcellular
  RDF::URI.new("http://www.neurolex.org/wiki/")
end

.NMPDR ⇒ Object

Returns the link-out URI for objects of “National Microbial Pathogen Data Resource”.



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# File 'lib/biointerchange/goxref.rb', line 516

def self.NMPDR
  RDF::URI.new("http://www.nmpdr.org/linkin.cgi?id=")
end

.OMIM ⇒ Object

Returns the link-out URI for objects of “Mendelian Inheritance in Man”.



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# File 'lib/biointerchange/goxref.rb', line 521

def self.OMIM
  RDF::URI.new("http://omim.org/entry/")
end

.PAMGO_GAT ⇒ Object

Returns the link-out URI for objects of “Genome Annotation Tool (Agrobacterium tumefaciens C58); PAMGO Interest Group”.



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# File 'lib/biointerchange/goxref.rb', line 526

def self.PAMGO_GAT
  RDF::URI.new("http://agro.vbi.vt.edu/public/servlet/GeneEdit?&Search=Search&level=2&genename=")
end

.PAMGO_MGG ⇒ Object

Returns the link-out URI for objects of “Magnaporthe grisea database”.



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# File 'lib/biointerchange/goxref.rb', line 531

def self.PAMGO_MGG
  RDF::URI.new("http://scotland.fgl.ncsu.edu/cgi-bin/adHocQuery.cgi?adHocQuery_dbName=smeng_goannotation&Action=Data&QueryName=Functional+Categorization+of+MGG+GO+Annotation&P_KeyWord=")
end

.PAMGO_VMD ⇒ Object

Returns the link-out URI for objects of “Virginia Bioinformatics Institute Microbial Database”.



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# File 'lib/biointerchange/goxref.rb', line 536

def self.PAMGO_VMD
  RDF::URI.new("http://vmd.vbi.vt.edu/cgi-bin/browse/go_detail.cgi?gene_id=")
end

.PANTHER ⇒ Object

Returns the link-out URI for objects of “Protein ANalysis THrough Evolutionary Relationships”.



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# File 'lib/biointerchange/goxref.rb', line 541

def self.PANTHER
  RDF::URI.new("http://pantree.org/node/annotationNode.jsp?id=")
end

.PATRIC ⇒ Object

Returns the link-out URI for objects of “PathoSystems Resource Integration Center”.



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# File 'lib/biointerchange/goxref.rb', line 546

def self.PATRIC
  RDF::URI.new("http://patric.vbi.vt.edu/gene/overview.php?fid=")
end

.PDB ⇒ Object

Returns the link-out URI for objects of “Protein Data Bank”.



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# File 'lib/biointerchange/goxref.rb', line 551

def self.PDB
  RDF::URI.new("http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=")
end

.Pfam ⇒ Object

Returns the link-out URI for objects of “Pfam database of protein families”.



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# File 'lib/biointerchange/goxref.rb', line 556

def self.Pfam
  RDF::URI.new("http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?")
end

.PharmGKB ⇒ Object

Returns the link-out URI for objects of “Pharmacogenetics and Pharmacogenomics Knowledge Base”.



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# File 'lib/biointerchange/goxref.rb', line 561

def self.PharmGKB
  RDF::URI.new("http://www.pharmgkb.org/do/serve?objId=")
end

.PIR ⇒ Object

Returns the link-out URI for objects of “Protein Information Resource”.



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# File 'lib/biointerchange/goxref.rb', line 566

def self.PIR
  RDF::URI.new("http://pir.georgetown.edu/cgi-bin/pirwww/nbrfget?uid=")
end

.PIRSF ⇒ Object

Returns the link-out URI for objects of “PIR Superfamily Classification System”.



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# File 'lib/biointerchange/goxref.rb', line 571

def self.PIRSF
  RDF::URI.new("http://pir.georgetown.edu/cgi-bin/ipcSF?id=")
end

.PMCID ⇒ Object

Returns the link-out URI for objects of “Pubmed Central”.



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# File 'lib/biointerchange/goxref.rb', line 576

def self.PMCID
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/sites/entrez?db=pmc&cmd=search&term=")
end

.PMID ⇒ Object

Returns the link-out URI for objects of “PubMed”.



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# File 'lib/biointerchange/goxref.rb', line 581

def self.PMID
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/pubmed/")
end

.PO ⇒ Object

Returns the link-out URI for objects of “Plant Ontology Consortium Database”.



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# File 'lib/biointerchange/goxref.rb', line 586

def self.PO
  RDF::URI.new("http://www.plantontology.org/amigo/go.cgi?action=query&view=query&search_constraint=terms&query=PO:")
end

.PO_REF ⇒ Object

Returns the link-out URI for objects of “Plant Ontology custom references”.



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# File 'lib/biointerchange/goxref.rb', line 591

def self.PO_REF
  RDF::URI.new("http://wiki.plantontology.org:8080/index.php/PO_REF:")
end

.PomBase ⇒ Object

Returns the link-out URI for objects of “PomBase”.



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# File 'lib/biointerchange/goxref.rb', line 596

def self.PomBase
  RDF::URI.new("http://www.pombase.org/spombe/result/")
end

.PR ⇒ Object

Returns the link-out URI for objects of “Protein Ontology”.



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# File 'lib/biointerchange/goxref.rb', line 601

def self.PR
  RDF::URI.new("http://www.proconsortium.org/cgi-bin/pro/entry_pro?id=PR:")
end

.PRINTS ⇒ Object

Returns the link-out URI for objects of “PRINTS compendium of protein fingerprints”.



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# File 'lib/biointerchange/goxref.rb', line 606

def self.PRINTS
  RDF::URI.new("http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&regexpr=off&prints_accn=")
end

.ProDom ⇒ Object

Returns the link-out URI for objects of “ProDom protein domain families”.



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# File 'lib/biointerchange/goxref.rb', line 611

def self.ProDom
  RDF::URI.new("http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=")
end

.Prosite ⇒ Object

Returns the link-out URI for objects of “Prosite database of protein families and domains”.



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# File 'lib/biointerchange/goxref.rb', line 616

def self.Prosite
  RDF::URI.new("http://www.expasy.ch/cgi-bin/prosite-search-ac?")
end

.PseudoCAP ⇒ Object

Returns the link-out URI for objects of “Pseudomonas Genome Project”.



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# File 'lib/biointerchange/goxref.rb', line 621

def self.PseudoCAP
  RDF::URI.new("http://v2.pseudomonas.com/getAnnotation.do?locusID=")
end

.PSI_MOD ⇒ Object

Returns the link-out URI for objects of “Proteomics Standards Initiative protein modification ontology”.



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# File 'lib/biointerchange/goxref.rb', line 626

def self.PSI_MOD
  RDF::URI.new("http://www.ebi.ac.uk/ontology-lookup/?termId=MOD:")
end

.PubChem_BioAssay ⇒ Object

Returns the link-out URI for objects of “NCBI PubChem database of bioassay records”.



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# File 'lib/biointerchange/goxref.rb', line 631

def self.PubChem_BioAssay
  RDF::URI.new("http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=")
end

.PubChem_Compound ⇒ Object

Returns the link-out URI for objects of “NCBI PubChem database of chemical structures”.



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# File 'lib/biointerchange/goxref.rb', line 636

def self.PubChem_Compound
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pccompound&term=")
end

.PubChem_Substance ⇒ Object

Returns the link-out URI for objects of “NCBI PubChem database of chemical substances”.



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# File 'lib/biointerchange/goxref.rb', line 641

def self.PubChem_Substance
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=")
end

.Reactome ⇒ Object

Returns the link-out URI for objects of “Reactome - a curated knowledgebase of biological pathways”.



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# File 'lib/biointerchange/goxref.rb', line 646

def self.Reactome
  RDF::URI.new("http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=")
end

.RefSeq ⇒ Object

Returns the link-out URI for objects of “RefSeq”.



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# File 'lib/biointerchange/goxref.rb', line 651

def self.RefSeq
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=")
end

.RefSeq_NA ⇒ Object

Returns the link-out URI for objects of “RefSeq (Nucleic Acid)”.



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# File 'lib/biointerchange/goxref.rb', line 656

def self.RefSeq_NA
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=")
end

.RefSeq_Prot ⇒ Object

Returns the link-out URI for objects of “RefSeq (Protein)”.



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# File 'lib/biointerchange/goxref.rb', line 661

def self.RefSeq_Prot
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=")
end

.Rfam ⇒ Object

Returns the link-out URI for objects of “Rfam database of RNA families”.



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# File 'lib/biointerchange/goxref.rb', line 666

def self.Rfam
  RDF::URI.new("http://rfam.sanger.ac.uk/family/")
end

.RGD ⇒ Object

Returns the link-out URI for objects of “Rat Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 671

def self.RGD
  RDF::URI.new("http://rgd.mcw.edu/generalSearch/RgdSearch.jsp?quickSearch=1&searchKeyword=")
end

.RHEA ⇒ Object

Returns the link-out URI for objects of “Rhea, the Annotated Reactions Database”.



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# File 'lib/biointerchange/goxref.rb', line 676

def self.RHEA
  RDF::URI.new("http://www.ebi.ac.uk/rhea/reaction.xhtml?id=")
end

.RNAmods ⇒ Object

Returns the link-out URI for objects of “RNA Modification Database”.



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# File 'lib/biointerchange/goxref.rb', line 681

def self.RNAmods
  RDF::URI.new("http://s59.cas.albany.edu/RNAmods/cgi-bin/rnashow.cgi?")
end

.RO ⇒ Object

Returns the link-out URI for objects of “OBO Relation Ontology Ontology”.



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# File 'lib/biointerchange/goxref.rb', line 686

def self.RO
  RDF::URI.new("http://purl.obolibrary.org/obo/RO_")
end

.SABIO_RK ⇒ Object

Returns the link-out URI for objects of “SABIO Reaction Kinetics”.



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# File 'lib/biointerchange/goxref.rb', line 691

def self.SABIO_RK
  RDF::URI.new("http://sabio.villa-bosch.de/reacdetails.jsp?reactid=")
end

.SEED ⇒ Object

Returns the link-out URI for objects of “The SEED;”.



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# File 'lib/biointerchange/goxref.rb', line 696

def self.SEED
  RDF::URI.new("http://www.theseed.org/linkin.cgi?id=")
end

.SGD ⇒ Object

Returns the link-out URI for objects of “Saccharomyces Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 701

def self.SGD
  RDF::URI.new("http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=")
end

.SGD_LOCUS ⇒ Object

Returns the link-out URI for objects of “Saccharomyces Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 706

def self.SGD_LOCUS
  RDF::URI.new("http://db.yeastgenome.org/cgi-bin/locus.pl?locus=")
end

.SGD_REF ⇒ Object

Returns the link-out URI for objects of “Saccharomyces Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 711

def self.SGD_REF
  RDF::URI.new("http://db.yeastgenome.org/cgi-bin/reference/reference.pl?dbid=")
end

.SGN ⇒ Object

Returns the link-out URI for objects of “Sol Genomics Network”.



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# File 'lib/biointerchange/goxref.rb', line 716

def self.SGN
  RDF::URI.new("http://www.sgn.cornell.edu/phenome/locus_display.pl?locus_id=")
end

.SGN_ref ⇒ Object

Returns the link-out URI for objects of “Sol Genomics Network”.



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# File 'lib/biointerchange/goxref.rb', line 721

def self.SGN_ref
  RDF::URI.new("http://www.sgn.cornell.edu/chado/publication.pl?pub_id=")
end

.SMART ⇒ Object

Returns the link-out URI for objects of “Simple Modular Architecture Research Tool”.



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# File 'lib/biointerchange/goxref.rb', line 726

def self.SMART
  RDF::URI.new("http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=")
end

.SO ⇒ Object

Returns the link-out URI for objects of “Sequence Ontology”.



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# File 'lib/biointerchange/goxref.rb', line 731

def self.SO
  RDF::URI.new("http://song.sourceforge.net/SOterm_tables.html#SO:")
end

.SUPERFAMILY ⇒ Object

Returns the link-out URI for objects of “SUPERFAMILY protein annotation database”.



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# File 'lib/biointerchange/goxref.rb', line 736

def self.SUPERFAMILY
  RDF::URI.new("http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/scop.cgi?ipid=SSF")
end

.Swiss_Prot ⇒ Object

Returns the link-out URI for objects of “UniProtKB/Swiss-Prot”.



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# File 'lib/biointerchange/goxref.rb', line 741

def self.Swiss_Prot
  RDF::URI.new("http://www.uniprot.org/uniprot/")
end

.TAIR ⇒ Object

Returns the link-out URI for objects of “The Arabidopsis Information Resource”.



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# File 'lib/biointerchange/goxref.rb', line 746

def self.TAIR
  RDF::URI.new("http://arabidopsis.org/servlets/TairObject?accession=")
end

.taxon ⇒ Object

Returns the link-out URI for objects of “NCBI Taxonomy”.



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# File 'lib/biointerchange/goxref.rb', line 751

def self.taxon
  RDF::URI.new("http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=")
end

.TC ⇒ Object

Returns the link-out URI for objects of “Transport Protein Database”.



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# File 'lib/biointerchange/goxref.rb', line 756

def self.TC
  RDF::URI.new("http://www.tcdb.org/tcdb/index.php?tc=")
end

.TGD_LOCUS ⇒ Object

Returns the link-out URI for objects of “Tetrahymena Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 761

def self.TGD_LOCUS
  RDF::URI.new("http://db.ciliate.org/cgi-bin/locus.pl?locus=")
end

.TGD_REF ⇒ Object

Returns the link-out URI for objects of “Tetrahymena Genome Database”.



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# File 'lib/biointerchange/goxref.rb', line 766

def self.TGD_REF
  RDF::URI.new("http://db.ciliate.org/cgi-bin/reference/reference.pl?dbid=")
end

.TrEMBL ⇒ Object

Returns the link-out URI for objects of “UniProtKB-TrEMBL protein sequence database”.



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# File 'lib/biointerchange/goxref.rb', line 771

def self.TrEMBL
  RDF::URI.new("http://www.uniprot.org/uniprot/")
end

.UBERON ⇒ Object

Returns the link-out URI for objects of “Uber-anatomy ontology”.



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# File 'lib/biointerchange/goxref.rb', line 776

def self.UBERON
  RDF::URI.new("http://purl.obolibrary.org/obo/UBERON_")
end

.UM_BBD_enzymeID ⇒ Object

Returns the link-out URI for objects of “University of Minnesota Biocatalysis/Biodegradation Database”.



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# File 'lib/biointerchange/goxref.rb', line 781

def self.UM_BBD_enzymeID
  RDF::URI.new("http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=ep&enzymeID=")
end

.UM_BBD_reactionID ⇒ Object

Returns the link-out URI for objects of “University of Minnesota Biocatalysis/Biodegradation Database”.



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# File 'lib/biointerchange/goxref.rb', line 786

def self.UM_BBD_reactionID
  RDF::URI.new("http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=r&reacID=")
end

.UM_BBD_ruleID ⇒ Object

Returns the link-out URI for objects of “University of Minnesota Biocatalysis/Biodegradation Database”.



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# File 'lib/biointerchange/goxref.rb', line 791

def self.UM_BBD_ruleID
  RDF::URI.new("http://umbbd.msi.umn.edu/servlets/rule.jsp?rule=")
end

.UniMod ⇒ Object

Returns the link-out URI for objects of “UniMod”.



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# File 'lib/biointerchange/goxref.rb', line 796

def self.UniMod
  RDF::URI.new("http://www.unimod.org/modifications_view.php?editid1=")
end

.UniParc ⇒ Object

Returns the link-out URI for objects of “UniProt Archive”.



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# File 'lib/biointerchange/goxref.rb', line 801

def self.UniParc
  RDF::URI.new("http://www.uniprot.org/uniparc/")
end

.UniPathway ⇒ Object

Returns the link-out URI for objects of “UniPathway”.



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# File 'lib/biointerchange/goxref.rb', line 806

def self.UniPathway
  RDF::URI.new("http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=")
end

.UniProtKB ⇒ Object

Returns the link-out URI for objects of “Universal Protein Knowledgebase”.



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# File 'lib/biointerchange/goxref.rb', line 811

def self.UniProtKB
  RDF::URI.new("http://www.uniprot.org/uniprot/")
end

.UniProtKB_KW ⇒ Object

Returns the link-out URI for objects of “UniProt Knowledgebase keywords”.



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# File 'lib/biointerchange/goxref.rb', line 816

def self.UniProtKB_KW
  RDF::URI.new("http://www.uniprot.org/keywords/")
end

.UniProtKB_SubCell ⇒ Object

Returns the link-out URI for objects of “UniProt Knowledgebase Subcellular Location vocabulary”.



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# File 'lib/biointerchange/goxref.rb', line 821

def self.UniProtKB_SubCell
  RDF::URI.new("http://www.uniprot.org/locations/")
end

.VBRC ⇒ Object

Returns the link-out URI for objects of “Viral Bioinformatics Resource Center”.



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# File 'lib/biointerchange/goxref.rb', line 826

def self.VBRC
  RDF::URI.new("http://vbrc.org/query.asp?web_id=VBRC:")
end

.VEGA ⇒ Object

Returns the link-out URI for objects of “Vertebrate Genome Annotation database”.



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# File 'lib/biointerchange/goxref.rb', line 831

def self.VEGA
  RDF::URI.new("http://vega.sanger.ac.uk/perl/searchview?species=all&idx=All&q=")
end

.VMD ⇒ Object

Returns the link-out URI for objects of “Virginia Bioinformatics Institute Microbial Database”.



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# File 'lib/biointerchange/goxref.rb', line 836

def self.VMD
  RDF::URI.new("http://vmd.vbi.vt.edu/cgi-bin/browse/browserDetail_new.cgi?gene_id=")
end

.WB ⇒ Object

Returns the link-out URI for objects of “WormBase database of nematode biology”.



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# File 'lib/biointerchange/goxref.rb', line 841

def self.WB
  RDF::URI.new("http://www.wormbase.org/db/gene/gene?name=")
end

.WB_REF ⇒ Object

Returns the link-out URI for objects of “WormBase database of nematode biology”.



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# File 'lib/biointerchange/goxref.rb', line 846

def self.WB_REF
  RDF::URI.new("http://www.wormbase.org/db/misc/paper?name=")
end

.Wikipedia ⇒ Object

Returns the link-out URI for objects of “Wikipedia”.



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# File 'lib/biointerchange/goxref.rb', line 851

def self.Wikipedia
  RDF::URI.new("http://en.wikipedia.org/wiki/")
end

.WP ⇒ Object

Returns the link-out URI for objects of “Wormpep database of proteins of C. elegans”.



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# File 'lib/biointerchange/goxref.rb', line 856

def self.WP
  RDF::URI.new("http://www.wormbase.org/db/get?class=Protein;name=WP:")
end

.ZFIN ⇒ Object

Returns the link-out URI for objects of “Zebrafish Information Network”.



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# File 'lib/biointerchange/goxref.rb', line 861

def self.ZFIN
  RDF::URI.new("http://zfin.org/cgi-bin/ZFIN_jump?record=")
end