Class: BioInterchange::LifeScienceRegistry
- Inherits:
-
Object
- Object
- BioInterchange::LifeScienceRegistry
- Defined in:
- lib/biointerchange/life_science_registry.rb
Class Method Summary collapse
- .a_2dbaseecoli ⇒ Object
- .a_3did ⇒ Object
- .a_4dxpress ⇒ Object
- .aaindex ⇒ Object
- .abs ⇒ Object
- .aceview_worm ⇒ Object
- .aclame ⇒ Object
- .adda ⇒ Object
- .adw ⇒ Object
- .agbase ⇒ Object
- .agd ⇒ Object
- .agsd ⇒ Object
- .alfred ⇒ Object
- .allergome ⇒ Object
- .alterorf ⇒ Object
- .alzgene ⇒ Object
- .amoebadb ⇒ Object
- .anobase ⇒ Object
- .antijen ⇒ Object
- .antweb ⇒ Object
- .aogacioah ⇒ Object
- .apd ⇒ Object
- .aphidbase ⇒ Object
- .arachnoserver ⇒ Object
- .aracxyls ⇒ Object
- .archdb ⇒ Object
- .ardb ⇒ Object
- .arkdb ⇒ Object
- .arrayexpress ⇒ Object
- .artadedb ⇒ Object
- .arxiv ⇒ Object
- .asalps ⇒ Object
- .asap ⇒ Object
- .asrp ⇒ Object
- .astd ⇒ Object
- .atc ⇒ Object
- .atpid ⇒ Object
- .attedii ⇒ Object
- .autdb ⇒ Object
- .bacmap ⇒ Object
- .bacteriome ⇒ Object
- .bactibase ⇒ Object
- .balibase ⇒ Object
- .bbid ⇒ Object
- .bdgp ⇒ Object
- .beetlebase ⇒ Object
- .benchmark ⇒ Object
- .bged ⇒ Object
- .bgee ⇒ Object
- .bgee_genes ⇒ Object
- .bgee_organ ⇒ Object
- .bid ⇒ Object
- .bind ⇒ Object
- .binding_moad ⇒ Object
- .bindingdb ⇒ Object
- .biocatalogue ⇒ Object
- .biocyc ⇒ Object
- .biogrid ⇒ Object
- .biomagresbank ⇒ Object
- .biomodels ⇒ Object
- .bionemo ⇒ Object
- .bionumbers ⇒ Object
- .biopax_l2 ⇒ Object
- .biopax_l3 ⇒ Object
- .biopixie ⇒ Object
- .bioportal ⇒ Object
- .biosystems ⇒ Object
- .biozon ⇒ Object
- .bmph ⇒ Object
- .bodymap ⇒ Object
- .bold ⇒ Object
- .bps ⇒ Object
- .brenda ⇒ Object
- .bsd ⇒ Object
- .bsorf ⇒ Object
- .buchnerabase ⇒ Object
- .bykdb ⇒ Object
- .cage_ctss ⇒ Object
- .cage_library ⇒ Object
- .cage_tc ⇒ Object
- .cage_tu ⇒ Object
- .cancergenes ⇒ Object
- .cangem ⇒ Object
- .carpedb_gene ⇒ Object
- .carpedb_reference ⇒ Object
- .cas ⇒ Object
- .catdb ⇒ Object
- .cath ⇒ Object
- .cattleqtldb ⇒ Object
- .cazy ⇒ Object
- .ccd ⇒ Object
- .ccds ⇒ Object
- .ccm ⇒ Object
- .cdd ⇒ Object
- .cellimage ⇒ Object
- .cgd ⇒ Object
- .cged ⇒ Object
- .cgnc ⇒ Object
- .cgsc ⇒ Object
- .chebi ⇒ Object
- .chembank ⇒ Object
- .chembl ⇒ Object
- .chembl_compound ⇒ Object
- .chembl_target ⇒ Object
- .chemdb ⇒ Object
- .chemidplus ⇒ Object
- .chemspider ⇒ Object
- .chickenqtldb ⇒ Object
- .chickvd ⇒ Object
- .chromdb ⇒ Object
- .cid ⇒ Object
- .cisred ⇒ Object
- .citexplore ⇒ Object
- .cleanest ⇒ Object
- .cleanex ⇒ Object
- .clibe ⇒ Object
- .clinicaltrials ⇒ Object
- .cmd ⇒ Object
- .cmgsdb_chain ⇒ Object
- .cmgsdb_exp ⇒ Object
- .cmgsdb_gene ⇒ Object
- .cmgsdb_protein ⇒ Object
- .cmr ⇒ Object
- .cnidbase ⇒ Object
- .cno ⇒ Object
- .cog ⇒ Object
- .cogat ⇒ Object
- .cogeme ⇒ Object
- .combine_specifications ⇒ Object
- .come ⇒ Object
- .comparative_genometrics ⇒ Object
- .compluyeast2dpage ⇒ Object
- .compulyeast ⇒ Object
- .conoserver ⇒ Object
- .consurfdb ⇒ Object
- .cope ⇒ Object
- .corg ⇒ Object
- .corum ⇒ Object
- .cosmic ⇒ Object
- .coxpresdb ⇒ Object
- .cpndb ⇒ Object
- .cpo ⇒ Object
- .cpr ⇒ Object
- .cryptodb ⇒ Object
- .csa ⇒ Object
- .csrd ⇒ Object
- .cst ⇒ Object
- .ctad ⇒ Object
- .ctcae ⇒ Object
- .ctd ⇒ Object
- .ctga ⇒ Object
- .cutdb ⇒ Object
- .cutg ⇒ Object
- .cyanobase ⇒ Object
- .cybase ⇒ Object
- .cyclebase ⇒ Object
- .cygd ⇒ Object
- .dali ⇒ Object
- .dart ⇒ Object
- .datf ⇒ Object
- .dbd ⇒ Object
- .dbest ⇒ Object
- .dbpabp ⇒ Object
- .dbpedia ⇒ Object
- .dbprobe ⇒ Object
- .dbptm ⇒ Object
- .dbres ⇒ Object
- .dbsnp ⇒ Object
- .dbtgr ⇒ Object
- .dc ⇒ Object
- .dccp ⇒ Object
- .ddbj ⇒ Object
- .ddoc ⇒ Object
- .defensins_knowledgebase ⇒ Object
- .dhaplodb ⇒ Object
- .dictybase_gene ⇒ Object
- .dictybase_ref ⇒ Object
- .dima ⇒ Object
- .dip ⇒ Object
- .disprot ⇒ Object
- .do ⇒ Object
- .doi ⇒ Object
- .domine ⇒ Object
- .domins ⇒ Object
- .door ⇒ Object
- .doqcs_model ⇒ Object
- .doqcs_pathway ⇒ Object
- .dosaccobs2dpage ⇒ Object
- .dpd ⇒ Object
- .dpinteract ⇒ Object
- .dpr ⇒ Object
- .dpvweb ⇒ Object
- .dragondb_allele ⇒ Object
- .dragondb_dna ⇒ Object
- .dragondb_locus ⇒ Object
- .dragondb_protein ⇒ Object
- .drospege ⇒ Object
- .drtf ⇒ Object
- .drugbank ⇒ Object
- .ec ⇒ Object
- .echobase ⇒ Object
- .eco ⇒ Object
- .ecocyc_compound ⇒ Object
- .ecocyc_enzyme ⇒ Object
- .ecocyc_gene ⇒ Object
- .ecocyc_pathway ⇒ Object
- .ecocyc_reaction ⇒ Object
- .ecocyc_ref ⇒ Object
- .ecogene ⇒ Object
- .ecoliwiki ⇒ Object
- .edam ⇒ Object
- .edas_human ⇒ Object
- .edas_mouse ⇒ Object
- .efsite ⇒ Object
- .eggnog ⇒ Object
- .ego ⇒ Object
- .elm ⇒ Object
- .embl ⇒ Object
- .emglib ⇒ Object
- .emim ⇒ Object
- .ena ⇒ Object
- .endonet ⇒ Object
- .ensembl ⇒ Object
- .ensembl_bacteria ⇒ Object
- .ensembl_fungi ⇒ Object
- .ensembl_metazoa ⇒ Object
- .ensembl_plant ⇒ Object
- .ensembl_protist ⇒ Object
- .enzyme ⇒ Object
- .epcondb ⇒ Object
- .epd ⇒ Object
- .epgd ⇒ Object
- .erd ⇒ Object
- .ergo ⇒ Object
- .ergr ⇒ Object
- .eropmoscow ⇒ Object
- .esldb ⇒ Object
- .esther ⇒ Object
- .eugenes ⇒ Object
- .euhcvdb ⇒ Object
- .evoc ⇒ Object
- .evola ⇒ Object
- .explorenz ⇒ Object
- .eyesite ⇒ Object
- .ezcatdb ⇒ Object
- .fcp ⇒ Object
- .fgdb ⇒ Object
- .firedb ⇒ Object
- .flight ⇒ Object
- .flybase ⇒ Object
- .flymine ⇒ Object
- .flytf ⇒ Object
- .frnadb ⇒ Object
- .fugoid ⇒ Object
- .funpep ⇒ Object
- .gabi ⇒ Object
- .gallus_gbrowse ⇒ Object
- .gdfr_est ⇒ Object
- .gdfr_marker ⇒ Object
- .geisha ⇒ Object
- .genage ⇒ Object
- .genatlas ⇒ Object
- .genbank ⇒ Object
- .gendis ⇒ Object
- .gendr ⇒ Object
- .genecards ⇒ Object
- .genedb ⇒ Object
- .genefarm ⇒ Object
- .geneloc ⇒ Object
- .genenet ⇒ Object
- .genenote ⇒ Object
- .genetrap ⇒ Object
- .genetree ⇒ Object
- .genetrees ⇒ Object
- .genolevures ⇒ Object
- .genomereviews ⇒ Object
- .genomernai ⇒ Object
- .gensat ⇒ Object
- .geo ⇒ Object
- .germonline_gene ⇒ Object
- .germonline_marker ⇒ Object
- .ghr ⇒ Object
- .gi ⇒ Object
- .giardiadb ⇒ Object
- .gib ⇒ Object
- .gissd ⇒ Object
- .glycomapsdb ⇒ Object
- .glycomedb ⇒ Object
- .glyconavi ⇒ Object
- .gnd ⇒ Object
- .go ⇒ Object
- .goa ⇒ Object
- .gold ⇒ Object
- .gopad ⇒ Object
- .gp ⇒ Object
- .gpcrdb ⇒ Object
- .gpxmacrophage ⇒ Object
- .gramene_gene ⇒ Object
- .gramene_po ⇒ Object
- .gramene_protein ⇒ Object
- .gramene_qtl ⇒ Object
- .gramene_ref ⇒ Object
- .gramene_taxonomy ⇒ Object
- .greengenes ⇒ Object
- .greenphyldb ⇒ Object
- .grin ⇒ Object
- .grin_taxonomy ⇒ Object
- .grsdb ⇒ Object
- .gtop ⇒ Object
- .gtrdb ⇒ Object
- .gxa ⇒ Object
- .gxd ⇒ Object
- .hagr ⇒ Object
- .hamap ⇒ Object
- .hapmap ⇒ Object
- .hbvar ⇒ Object
- .hc ⇒ Object
- .hcnet ⇒ Object
- .hcpin ⇒ Object
- .hcv ⇒ Object
- .hdbas ⇒ Object
- .hdbase ⇒ Object
- .hdr ⇒ Object
- .hedgehog ⇒ Object
- .hegdb ⇒ Object
- .hembase ⇒ Object
- .hgnc ⇒ Object
- .hgnc_id ⇒ Object
- .hgpd ⇒ Object
- .hgsdd ⇒ Object
- .hgvbase ⇒ Object
- .hinv_locus ⇒ Object
- .hinv_protein ⇒ Object
- .hinv_transcript ⇒ Object
- .hits ⇒ Object
- .hmdb ⇒ Object
- .hmp ⇒ Object
- .hmpd ⇒ Object
- .hogenom ⇒ Object
- .hoinvgen ⇒ Object
- .homd ⇒ Object
- .homd_seq ⇒ Object
- .homd_taxon ⇒ Object
- .homeodomain_resource ⇒ Object
- .homstrad ⇒ Object
- .hoppsigen ⇒ Object
- .horde ⇒ Object
- .hotsprint ⇒ Object
- .hovergen ⇒ Object
- .howdy ⇒ Object
- .hpa ⇒ Object
- .hpmr ⇒ Object
- .htpselex ⇒ Object
- .hubmed ⇒ Object
- .huge ⇒ Object
- .humancyc_compounds ⇒ Object
- .humancyc_genes ⇒ Object
- .humancyc_pathways ⇒ Object
- .humancyc_reactions ⇒ Object
- .hupi ⇒ Object
- .icbs ⇒ Object
- .icd ⇒ Object
- .icds ⇒ Object
- .idbd ⇒ Object
- .iev ⇒ Object
- .igtcd ⇒ Object
- .ihop ⇒ Object
- .il2rgbase ⇒ Object
- .imex ⇒ Object
- .img_gene ⇒ Object
- .img_taxon ⇒ Object
- .imgt_3dstructuredb ⇒ Object
- .imgt_primerdb ⇒ Object
- .imotdb ⇒ Object
- .imr ⇒ Object
- .innatedb ⇒ Object
- .insrd ⇒ Object
- .intact ⇒ Object
- .integr8 ⇒ Object
- .intenz ⇒ Object
- .interactive_fly ⇒ Object
- .interfil ⇒ Object
- .interpare ⇒ Object
- .interpro ⇒ Object
- .ipath ⇒ Object
- .ipdestdab ⇒ Object
- .ipdmhc ⇒ Object
- .ipfam ⇒ Object
- .ipfam_proteome ⇒ Object
- .ipi ⇒ Object
- .iproclass ⇒ Object
- .ird_segment ⇒ Object
- .irefweb ⇒ Object
- .iresite ⇒ Object
- .isbn ⇒ Object
- .isfinder ⇒ Object
- .islander ⇒ Object
- .its2 ⇒ Object
- .iuphar_family ⇒ Object
- .iuphar_receptor ⇒ Object
- .ivdb ⇒ Object
- .jail ⇒ Object
- .jcm ⇒ Object
- .jcsd ⇒ Object
- .jcvi_genprop ⇒ Object
- .jws ⇒ Object
- .kdbi ⇒ Object
- .kdd ⇒ Object
- .kegg_brite ⇒ Object
- .kegg_compound ⇒ Object
- .kegg_disease ⇒ Object
- .kegg_drug ⇒ Object
- .kegg_gene ⇒ Object
- .kegg_genome ⇒ Object
- .kegg_glycan ⇒ Object
- .kegg_metagenome ⇒ Object
- .kegg_orthology ⇒ Object
- .kegg_pathway ⇒ Object
- .kegg_reaction ⇒ Object
- .kineticdb ⇒ Object
- .klotho ⇒ Object
- .l1base ⇒ Object
- .leproma ⇒ Object
- .lgicdb ⇒ Object
- .ligandexpo ⇒ Object
- .ligasite ⇒ Object
- .lipidbank ⇒ Object
- .lipidmaps ⇒ Object
- .lncrna ⇒ Object
- .locate ⇒ Object
- .loqate ⇒ Object
- .lpfc ⇒ Object
- .lsmd ⇒ Object
- .macie ⇒ Object
- .magest ⇒ Object
- .maizegdb ⇒ Object
- .malaria ⇒ Object
- .malisam ⇒ Object
- .mampol ⇒ Object
- .mapviewer ⇒ Object
- .matrixdb ⇒ Object
- .mdpd ⇒ Object
- .medline ⇒ Object
- .megamotifbase ⇒ Object
- .mepd ⇒ Object
- .merna ⇒ Object
- .merops ⇒ Object
- .metacyc ⇒ Object
- .metagrowth ⇒ Object
- .metatiger ⇒ Object
- .methycancer_cancer ⇒ Object
- .methycancer_clone ⇒ Object
- .methycancer_gene ⇒ Object
- .methycancer_methylation ⇒ Object
- .metnetdb ⇒ Object
- .mfungd ⇒ Object
- .mgc ⇒ Object
- .mgg ⇒ Object
- .mgi ⇒ Object
- .mgiid ⇒ Object
- .mhcbn ⇒ Object
- .micado ⇒ Object
- .microkit ⇒ Object
- .microsporidia ⇒ Object
- .millipore_pathways ⇒ Object
- .mimi ⇒ Object
- .mimodb ⇒ Object
- .mint ⇒ Object
- .mipmod ⇒ Object
- .mirbase ⇒ Object
- .mirbase_mature ⇒ Object
- .miriam_collection ⇒ Object
- .miriam_resource ⇒ Object
- .mirnamap ⇒ Object
- .mirnest ⇒ Object
- .mirortho ⇒ Object
- .mist ⇒ Object
- .mitodat ⇒ Object
- .mitoproteome ⇒ Object
- .mmcd ⇒ Object
- .mmdb ⇒ Object
- .mmmp ⇒ Object
- .mmsinc ⇒ Object
- .modeldb ⇒ Object
- .modomics ⇒ Object
- .mokca ⇒ Object
- .molmovdb ⇒ Object
- .mosdb ⇒ Object
- .mousecyc ⇒ Object
- .mp ⇒ Object
- .mpd ⇒ Object
- .mpi ⇒ Object
- .mtbd ⇒ Object
- .mtbreglist ⇒ Object
- .mulpssm ⇒ Object
- .mutdb ⇒ Object
- .myco_lepra ⇒ Object
- .myco_marinum ⇒ Object
- .myco_smeg ⇒ Object
- .myco_tuber ⇒ Object
- .mycobank ⇒ Object
- .napp ⇒ Object
- .narcis ⇒ Object
- .nasc ⇒ Object
- .nascarrays ⇒ Object
- .natsdb ⇒ Object
- .nbrc ⇒ Object
- .ncbi_protein ⇒ Object
- .ncbigene ⇒ Object
- .ncir ⇒ Object
- .ncit ⇒ Object
- .ncl_resource ⇒ Object
- .ncrnas_database ⇒ Object
- .ndb ⇒ Object
- .neibank ⇒ Object
- .nembase ⇒ Object
- .netbiochem ⇒ Object
- .netpath ⇒ Object
- .netpro ⇒ Object
- .neumore ⇒ Object
- .neurolex ⇒ Object
- .neuromorpho ⇒ Object
- .neurondb ⇒ Object
- .nextbio ⇒ Object
- .nextdb ⇒ Object
- .nextprot ⇒ Object
- .niaest ⇒ Object
- .nif ⇒ Object
- .nif_agency ⇒ Object
- .nif_backend ⇒ Object
- .nif_cell ⇒ Object
- .nif_dysfunction ⇒ Object
- .nif_grossanatomy ⇒ Object
- .nif_investigation ⇒ Object
- .nif_molecule ⇒ Object
- .nif_subcellular ⇒ Object
- .nmpdr ⇒ Object
- .noncode ⇒ Object
- .norine ⇒ Object
- .npd ⇒ Object
- .nprd ⇒ Object
- .ntdb ⇒ Object
- .nucleardb ⇒ Object
- .nursa ⇒ Object
- .obi ⇒ Object
- .odb ⇒ Object
- .ogd ⇒ Object
- .ogre ⇒ Object
- .okcam ⇒ Object
- .oma ⇒ Object
- .omia ⇒ Object
- .omim ⇒ Object
- .operondb ⇒ Object
- .ordb ⇒ Object
- .oreganno ⇒ Object
- .orenza ⇒ Object
- .orfdb ⇒ Object
- .organelle_db ⇒ Object
- .oridb ⇒ Object
- .orphanet ⇒ Object
- .orthodb ⇒ Object
- .orthomcl ⇒ Object
- .oryzabase_mutant ⇒ Object
- .oryzabase_strain ⇒ Object
- .otl ⇒ Object
- .p3db ⇒ Object
- .pairsdb ⇒ Object
- .paleodb ⇒ Object
- .pali ⇒ Object
- .pandit ⇒ Object
- .panther ⇒ Object
- .panther_family ⇒ Object
- .panther_gene ⇒ Object
- .panther_ontology ⇒ Object
- .panther_pathway ⇒ Object
- .partigenedb ⇒ Object
- .pass2 ⇒ Object
- .pathfinder ⇒ Object
- .pathguide ⇒ Object
- .pathoplant ⇒ Object
- .pathwaycommons ⇒ Object
- .pathwayontology ⇒ Object
- .pato ⇒ Object
- .patric ⇒ Object
- .pazar ⇒ Object
- .pdb ⇒ Object
- .pdb_tm ⇒ Object
- .pdba ⇒ Object
- .pdbe ⇒ Object
- .pdbj ⇒ Object
- .pdbsum ⇒ Object
- .pdtd ⇒ Object
- .pedant ⇒ Object
- .pede ⇒ Object
- .pepbank ⇒ Object
- .pepr ⇒ Object
- .peptideatlas ⇒ Object
- .peroxibase ⇒ Object
- .pfam ⇒ Object
- .pgdb ⇒ Object
- .pgn ⇒ Object
- .pharmgkb ⇒ Object
- .pharmgkb_disease ⇒ Object
- .pharmgkb_drug ⇒ Object
- .pharmgkb_gene ⇒ Object
- .pharmgkb_pathways ⇒ Object
- .phci2dpage ⇒ Object
- .phosphosite_protein ⇒ Object
- .phosphosite_residue ⇒ Object
- .pibase ⇒ Object
- .pid ⇒ Object
- .pig ⇒ Object
- .piggis ⇒ Object
- .pigqtldb ⇒ Object
- .pips ⇒ Object
- .pirsf ⇒ Object
- .pisite ⇒ Object
- .plantcyc ⇒ Object
- .plantsp_plantst ⇒ Object
- .planttfdb ⇒ Object
- .planttribes ⇒ Object
- .plasmid ⇒ Object
- .plasmodb ⇒ Object
- .plpmdb ⇒ Object
- .plprot ⇒ Object
- .pmap_cutdb ⇒ Object
- .pmap_substratedb ⇒ Object
- .pmc ⇒ Object
- .pmd ⇒ Object
- .pmdb ⇒ Object
- .pmp ⇒ Object
- .po ⇒ Object
- .pod ⇒ Object
- .pogs_plantrbp ⇒ Object
- .polya_db ⇒ Object
- .polydoms ⇒ Object
- .polymorphix ⇒ Object
- .poxvirus_gene ⇒ Object
- .poxvirus_genome ⇒ Object
- .pr ⇒ Object
- .precise ⇒ Object
- .premod ⇒ Object
- .priam ⇒ Object
- .pride ⇒ Object
- .prime ⇒ Object
- .prints ⇒ Object
- .procognate ⇒ Object
- .prodom ⇒ Object
- .prodoric_bindingsite ⇒ Object
- .prodoric_expression ⇒ Object
- .prodoric_gene ⇒ Object
- .prodoric_protein ⇒ Object
- .promex ⇒ Object
- .promise ⇒ Object
- .pronit ⇒ Object
- .prorule ⇒ Object
- .prosite ⇒ Object
- .protclustdb ⇒ Object
- .protcom ⇒ Object
- .protherm ⇒ Object
- .protonet_cluster ⇒ Object
- .protonet_proteincard ⇒ Object
- .psd ⇒ Object
- .pseudobase ⇒ Object
- .pseudocap ⇒ Object
- .pseudogene ⇒ Object
- .pseudomonas ⇒ Object
- .pstiing ⇒ Object
- .ptmswitchboard ⇒ Object
- .pubchem_bioassay ⇒ Object
- .pubchem_compound ⇒ Object
- .pubchem_substance ⇒ Object
- .pubmed ⇒ Object
- .pubmeth ⇒ Object
- .pw ⇒ Object
- .qppd ⇒ Object
- .rad ⇒ Object
- .rapdb ⇒ Object
- .rapid ⇒ Object
- .rarge ⇒ Object
- .ratmap ⇒ Object
- .rcd ⇒ Object
- .reactome ⇒ Object
- .rebase ⇒ Object
- .recode ⇒ Object
- .redfly ⇒ Object
- .redidb ⇒ Object
- .regtransbase ⇒ Object
- .regulondb ⇒ Object
- .replicationdomain ⇒ Object
- .repo ⇒ Object
- .reproduction2dpage ⇒ Object
- .resid ⇒ Object
- .rfam ⇒ Object
- .rgap ⇒ Object
- .rgd ⇒ Object
- .rgd_gene ⇒ Object
- .rgd_qtl ⇒ Object
- .rgd_ref ⇒ Object
- .rgd_strain ⇒ Object
- .rh_mesh ⇒ Object
- .rhea ⇒ Object
- .rice_pipeline ⇒ Object
- .ricecyc ⇒ Object
- .rissc ⇒ Object
- .rkd ⇒ Object
- .rmd ⇒ Object
- .rna_sstrand ⇒ Object
- .rnajunction ⇒ Object
- .rnamods ⇒ Object
- .rnao ⇒ Object
- .rnrdb ⇒ Object
- .roleo ⇒ Object
- .rospath_pc ⇒ Object
- .rospath_protein ⇒ Object
- .rospath_signalling ⇒ Object
- .rospath_transition ⇒ Object
- .rouge ⇒ Object
- .rpg ⇒ Object
- .rs ⇒ Object
- .rtcgd ⇒ Object
- .rtprimerdb ⇒ Object
- .rvd ⇒ Object
- .s_mart_db ⇒ Object
- .sabiork_ec ⇒ Object
- .sabiork_kinetic ⇒ Object
- .sabiork_reaction ⇒ Object
- .salad ⇒ Object
- .sbase ⇒ Object
- .sbo ⇒ Object
- .scadb ⇒ Object
- .schistodb ⇒ Object
- .scmd ⇒ Object
- .scpd ⇒ Object
- .scretf ⇒ Object
- .sdap ⇒ Object
- .sdr ⇒ Object
- .seedgenes ⇒ Object
- .selenodb ⇒ Object
- .sgd ⇒ Object
- .sgd_pathways ⇒ Object
- .sgn ⇒ Object
- .sheepqtldb ⇒ Object
- .shibase ⇒ Object
- .shr ⇒ Object
- .siege ⇒ Object
- .siena2dpage ⇒ Object
- .signaling_gateway ⇒ Object
- .silkdb ⇒ Object
- .silva ⇒ Object
- .sisyphus ⇒ Object
- .sitex ⇒ Object
- .smart ⇒ Object
- .smpdb ⇒ Object
- .smr ⇒ Object
- .snap ⇒ Object
- .snornalbmedb ⇒ Object
- .snp2nmd ⇒ Object
- .snp500cancer ⇒ Object
- .snpeffect ⇒ Object
- .so ⇒ Object
- .soy ⇒ Object
- .spbase ⇒ Object
- .spd ⇒ Object
- .spdo ⇒ Object
- .spliceinfo ⇒ Object
- .splicenest ⇒ Object
- .spodobase ⇒ Object
- .sprint ⇒ Object
- .spto ⇒ Object
- .srd ⇒ Object
- .srpdb ⇒ Object
- .sstoss ⇒ Object
- .straininfonet ⇒ Object
- .strepto_db ⇒ Object
- .suba ⇒ Object
- .subtiwiki ⇒ Object
- .sulfolobus ⇒ Object
- .superdrug ⇒ Object
- .superfamily ⇒ Object
- .superhapten ⇒ Object
- .supernatural ⇒ Object
- .superscent ⇒ Object
- .supersite ⇒ Object
- .supertoxic ⇒ Object
- .supfam ⇒ Object
- .swiss2dpage ⇒ Object
- .swissmodel ⇒ Object
- .syfpeithi ⇒ Object
- .symptom ⇒ Object
- .sysbodyfluid ⇒ Object
- .systers ⇒ Object
- .systomonas_compound ⇒ Object
- .systomonas_gene ⇒ Object
- .systomonas_interaction ⇒ Object
- .systomonas_pathways ⇒ Object
- .systomonas_protein ⇒ Object
- .t1dbase ⇒ Object
- .t3db ⇒ Object
- .taed ⇒ Object
- .tair_gene ⇒ Object
- .tair_locus ⇒ Object
- .tair_protein ⇒ Object
- .tao ⇒ Object
- .tarbase ⇒ Object
- .taxonomy ⇒ Object
- .taxrank ⇒ Object
- .tbdb ⇒ Object
- .tbestdb ⇒ Object
- .tc7ap ⇒ Object
- .tccd ⇒ Object
- .tcdb ⇒ Object
- .tcruzidb ⇒ Object
- .tecrdb ⇒ Object
- .tess ⇒ Object
- .tgd ⇒ Object
- .tgdb ⇒ Object
- .tgi ⇒ Object
- .tied ⇒ Object
- .tigrfams ⇒ Object
- .tol ⇒ Object
- .tomatest_db ⇒ Object
- .topdb ⇒ Object
- .topfind ⇒ Object
- .toxodb ⇒ Object
- .toxoplasma ⇒ Object
- .tpdb ⇒ Object
- .tpmd ⇒ Object
- .tptad ⇒ Object
- .transfactomedb ⇒ Object
- .transportdb ⇒ Object
- .transterm ⇒ Object
- .tred ⇒ Object
- .treebase ⇒ Object
- .treefam ⇒ Object
- .trichdb ⇒ Object
- .tritrypdb ⇒ Object
- .trmp ⇒ Object
- .trnadbce ⇒ Object
- .ttd_drug ⇒ Object
- .ttd_target ⇒ Object
- .tto ⇒ Object
- .tuberculist ⇒ Object
- .uagb ⇒ Object
- .ugmicrosatdb ⇒ Object
- .unigene ⇒ Object
- .uniparc ⇒ Object
- .unipathway ⇒ Object
- .uniprot ⇒ Object
- .uniprot_taxonomy ⇒ Object
- .uniref ⇒ Object
- .unite ⇒ Object
- .unprot_keywords ⇒ Object
- .uo ⇒ Object
- .utrdb_utrsite ⇒ Object
- .utrome ⇒ Object
- .vbase2 ⇒ Object
- .vectorbase ⇒ Object
- .vega ⇒ Object
- .vfdb ⇒ Object
- .viperdb ⇒ Object
- .virmirdb ⇒ Object
- .viroligo ⇒ Object
- .virsirna ⇒ Object
- .vita ⇒ Object
- .vkcdb ⇒ Object
- .vmd ⇒ Object
- .vz ⇒ Object
- .wbbt ⇒ Object
- .wbls ⇒ Object
- .wbphenotype ⇒ Object
- .webelements ⇒ Object
- .wfleabase ⇒ Object
- .wikipathways ⇒ Object
- .wikipedia ⇒ Object
- .worfdb ⇒ Object
- .world2dpage ⇒ Object
- .wormbase_gene ⇒ Object
- .wormbase_rnai ⇒ Object
- .wormbook ⇒ Object
- .wormpep ⇒ Object
- .xao ⇒ Object
- .xenbase ⇒ Object
- .ycmn_complex ⇒ Object
- .ycmn_compound ⇒ Object
- .ycmn_gene ⇒ Object
- .ycmn_protein ⇒ Object
- .ycmn_reaction ⇒ Object
- .yeastfunc ⇒ Object
- .yeastract ⇒ Object
- .ygob ⇒ Object
- .yh_database ⇒ Object
- .yrc ⇒ Object
- .ysd ⇒ Object
- .zfa ⇒ Object
- .zfin ⇒ Object
- .zifdb ⇒ Object
Class Method Details
.a_2dbaseecoli ⇒ Object
709 710 711 |
# File 'lib/biointerchange/life_science_registry.rb', line 709 def self.a_2dbaseecoli "http://2dbase.techfak.uni-bielefeld.de/cgi-bin/2d/2d.cgi?ac=$id" end |
.a_3did ⇒ Object
1197 1198 1199 |
# File 'lib/biointerchange/life_science_registry.rb', line 1197 def self.a_3did "http://3did.irbbarcelona.org/cgi-bin/query_domain_cgi.pl?domain=$id" end |
.a_4dxpress ⇒ Object
1201 1202 1203 |
# File 'lib/biointerchange/life_science_registry.rb', line 1201 def self.a_4dxpress "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=$id" end |
.aaindex ⇒ Object
1205 1206 1207 |
# File 'lib/biointerchange/life_science_registry.rb', line 1205 def self.aaindex "http://www.genome.jp/dbget-bin/www_bget?aaindex:$id" end |
.abs ⇒ Object
973 974 975 |
# File 'lib/biointerchange/life_science_registry.rb', line 973 def self.abs "http://genome.crg.es/datasets/abs2005/entries/$id.html" end |
.aceview_worm ⇒ Object
993 994 995 |
# File 'lib/biointerchange/life_science_registry.rb', line 993 def self.aceview_worm "http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=[?species_database]&c=Gene&l=$id" end |
.aclame ⇒ Object
241 242 243 |
# File 'lib/biointerchange/life_science_registry.rb', line 241 def self.aclame "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=$id" end |
.adda ⇒ Object
1209 1210 1211 |
# File 'lib/biointerchange/life_science_registry.rb', line 1209 def self.adda "http://ekhidna.biocenter.helsinki.fi/sqgraph/pairsdb/report_sequence?nid=$id" end |
.adw ⇒ Object
1213 1214 1215 |
# File 'lib/biointerchange/life_science_registry.rb', line 1213 def self.adw "http://animaldiversity.ummz.umich.edu/site/accounts/information/$id.html" end |
.agbase ⇒ Object
1217 1218 1219 |
# File 'lib/biointerchange/life_science_registry.rb', line 1217 def self.agbase "http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB&gb_acc=$id" end |
.agd ⇒ Object
713 714 715 |
# File 'lib/biointerchange/life_science_registry.rb', line 713 def self.agd "http://agd.vital-it.ch/Ashbya_gossypii/geneview?gene=$id" end |
.agsd ⇒ Object
1221 1222 1223 |
# File 'lib/biointerchange/life_science_registry.rb', line 1221 def self.agsd "http://www.genomesize.com/result_species.php?id=$id" end |
.alfred ⇒ Object
1225 1226 1227 |
# File 'lib/biointerchange/life_science_registry.rb', line 1225 def self.alfred "http://alfred.med.yale.edu/alfred/recordinfo.asp?condition=loci.locus_uid='$id" end |
.allergome ⇒ Object
1097 1098 1099 |
# File 'lib/biointerchange/life_science_registry.rb', line 1097 def self.allergome "http://www.allergome.org/script/refArray_view.php?idMol=$id" end |
.alterorf ⇒ Object
1229 1230 1231 |
# File 'lib/biointerchange/life_science_registry.rb', line 1229 def self.alterorf "http://www.alterorf.cl/SearchResults/SearchResult.aspx?variable1=$id" end |
.alzgene ⇒ Object
1233 1234 1235 |
# File 'lib/biointerchange/life_science_registry.rb', line 1233 def self.alzgene "http://www.alzgene.org/geneoverview.asp?geneid=$id" end |
.amoebadb ⇒ Object
541 542 543 |
# File 'lib/biointerchange/life_science_registry.rb', line 541 def self.amoebadb "http://amoebadb.org/amoeba/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id" end |
.anobase ⇒ Object
1237 1238 1239 |
# File 'lib/biointerchange/life_science_registry.rb', line 1237 def self.anobase "http://www.anobase.org/genetool/v42/gene.php?id=$id" end |
.antijen ⇒ Object
1241 1242 1243 |
# File 'lib/biointerchange/life_science_registry.rb', line 1241 def self.antijen "http://www.darrenflower.info/scripts/aj_scripts/aj_mhccalc2.pl?epitope=$id&AL=%25&ST=%25&CAT=MHC&detailinfo=no&detailmin=&detailmax=" end |
.antweb ⇒ Object
533 534 535 |
# File 'lib/biointerchange/life_science_registry.rb', line 533 def self.antweb "http://www.antweb.org/specimen.do?name=$id" end |
.aogacioah ⇒ Object
1245 1246 1247 |
# File 'lib/biointerchange/life_science_registry.rb', line 1245 def self.aogacioah "http://atlasgeneticsoncology.org/Genes/$id.html" end |
.apd ⇒ Object
977 978 979 |
# File 'lib/biointerchange/life_science_registry.rb', line 977 def self.apd "http://aps.unmc.edu/AP/database/query_output.php?ID=$id" end |
.aphidbase ⇒ Object
1249 1250 1251 |
# File 'lib/biointerchange/life_science_registry.rb', line 1249 def self.aphidbase "http://helico.genouest.org:8080/grs-1.8/grs?reportID=chado_[transcript/genome/protein]_report&objectID=$id" end |
.arachnoserver ⇒ Object
717 718 719 |
# File 'lib/biointerchange/life_science_registry.rb', line 717 def self.arachnoserver "http://www.arachnoserver.org/toxincard.html?id=$id" end |
.aracxyls ⇒ Object
1253 1254 1255 |
# File 'lib/biointerchange/life_science_registry.rb', line 1253 def self.aracxyls "http://www.eez.csic.es/arac-xyls/wfichas/$idrec.htm" end |
.archdb ⇒ Object
1257 1258 1259 |
# File 'lib/biointerchange/life_science_registry.rb', line 1257 def self.archdb "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$id" end |
.ardb ⇒ Object
1261 1262 1263 |
# File 'lib/biointerchange/life_science_registry.rb', line 1261 def self.ardb "http://ardb.cbcb.umd.edu/cgi/ssquery.cgi?db=T&ab=0&and1=A&ge=0&and2=A&sp=0&and3=A&gn=$id" end |
.arkdb ⇒ Object
1265 1266 1267 |
# File 'lib/biointerchange/life_science_registry.rb', line 1265 def self.arkdb "http://www.thearkdb.org/arkdb/do/getMappableDetails?accession=$id" end |
.arrayexpress ⇒ Object
137 138 139 |
# File 'lib/biointerchange/life_science_registry.rb', line 137 def self.arrayexpress "http://www.ebi.ac.uk/arrayexpress/experiments/$id" end |
.artadedb ⇒ Object
1269 1270 1271 |
# File 'lib/biointerchange/life_science_registry.rb', line 1269 def self.artadedb "http://omicspace.riken.jp/gps/index.html?url=/gps/LineMode/ArtadeSearch_Flower&hCheck=v200307&hHead=[?genomic_region]&highlight=$id" end |
.arxiv ⇒ Object
133 134 135 |
# File 'lib/biointerchange/life_science_registry.rb', line 133 def self.arxiv "http://arxiv.org/abs/$id" end |
.asalps ⇒ Object
1273 1274 1275 |
# File 'lib/biointerchange/life_science_registry.rb', line 1273 def self.asalps "http://as-alps.nagahama-i-bio.ac.jp/search.php?sp=hs&switch=cluster&id_type=transcript&id=$id" end |
.asap ⇒ Object
997 998 999 |
# File 'lib/biointerchange/life_science_registry.rb', line 997 def self.asap "https://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=$id" end |
.asrp ⇒ Object
1277 1278 1279 |
# File 'lib/biointerchange/life_science_registry.rb', line 1277 def self.asrp "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$id" end |
.astd ⇒ Object
1281 1282 1283 |
# File 'lib/biointerchange/life_science_registry.rb', line 1281 def self.astd "http://www.ebi.ac.uk/astd/geneview.html?acc=$id" end |
.atc ⇒ Object
333 334 335 |
# File 'lib/biointerchange/life_science_registry.rb', line 333 def self.atc "http://www.whocc.no/atc_ddd_index/?code=$id" end |
.atpid ⇒ Object
1285 1286 1287 |
# File 'lib/biointerchange/life_science_registry.rb', line 1285 def self.atpid "http://atpid.biosino.org/simple_detail.php?pro=$id" end |
.attedii ⇒ Object
1289 1290 1291 |
# File 'lib/biointerchange/life_science_registry.rb', line 1289 def self.attedii "http://atted.jp/data/cis/$id.html" end |
.autdb ⇒ Object
1293 1294 1295 |
# File 'lib/biointerchange/life_science_registry.rb', line 1293 def self.autdb "http://autism.mindspec.org/autdb/TableDetails.do?tableName=AUT_CANDIDATE_GENES&keyVal=$id" end |
.bacmap ⇒ Object
1297 1298 1299 |
# File 'lib/biointerchange/life_science_registry.rb', line 1297 def self.bacmap "http://wishart.biology.ualberta.ca/BacMap/cgview_linked_maps/$id/index.html" end |
.bacteriome ⇒ Object
1301 1302 1303 |
# File 'lib/biointerchange/life_science_registry.rb', line 1301 def self.bacteriome "http://www.compsysbio.org/bacteriome/tsdetail.php?cutoff=50&genestr=$id&genenum=0" end |
.bactibase ⇒ Object
1305 1306 1307 |
# File 'lib/biointerchange/life_science_registry.rb', line 1305 def self.bactibase "http://bactibase.pfba-lab-tun.org/$id" end |
.balibase ⇒ Object
1309 1310 1311 |
# File 'lib/biointerchange/life_science_registry.rb', line 1309 def self.balibase "http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/ref[$ref]/test/$id_ref[$ref].html" end |
.bbid ⇒ Object
1313 1314 1315 |
# File 'lib/biointerchange/life_science_registry.rb', line 1313 def self.bbid "http://bbid.grc.nia.nih.gov/geneimages/$id.jpeg" end |
.bdgp ⇒ Object
573 574 575 |
# File 'lib/biointerchange/life_science_registry.rb', line 573 def self.bdgp "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$id" end |
.beetlebase ⇒ Object
577 578 579 |
# File 'lib/biointerchange/life_science_registry.rb', line 577 def self.beetlebase "http://www.beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$id" end |
.benchmark ⇒ Object
1317 1318 1319 |
# File 'lib/biointerchange/life_science_registry.rb', line 1317 def self.benchmark "http://net.icgeb.org/benchmark/index.php?experiment=$id" end |
.bged ⇒ Object
1321 1322 1323 |
# File 'lib/biointerchange/life_science_registry.rb', line 1321 def self.bged "http://genome.mc.pref.osaka.jp/cgi-bin/BGED/Gene_info.pl?num=$id" end |
.bgee ⇒ Object
1325 1326 1327 |
# File 'lib/biointerchange/life_science_registry.rb', line 1325 def self.bgee "http://bgee.unil.ch/bgee/bgee?page=gene&action=expression&gene_id=$id" end |
.bgee_genes ⇒ Object
1329 1330 1331 |
# File 'lib/biointerchange/life_science_registry.rb', line 1329 def self.bgee_genes "http://bgee.unil.ch/bgee/bgee?page=gene&action=expression&gene_id=$id" end |
.bgee_organ ⇒ Object
1333 1334 1335 |
# File 'lib/biointerchange/life_science_registry.rb', line 1333 def self.bgee_organ "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id=$id" end |
.bid ⇒ Object
1337 1338 1339 |
# File 'lib/biointerchange/life_science_registry.rb', line 1337 def self.bid "http://tsailab.org/wikiBID/index.php/$id" end |
.bind ⇒ Object
5 6 7 |
# File 'lib/biointerchange/life_science_registry.rb', line 5 def self.bind "http://www.bind.ca/Action?identifier=bindid&idsearch=$id" end |
.binding_moad ⇒ Object
1341 1342 1343 |
# File 'lib/biointerchange/life_science_registry.rb', line 1341 def self.binding_moad "http://www.bindingmoad.org/moad/getMoadlet.do?id=$id" end |
.bindingdb ⇒ Object
969 970 971 |
# File 'lib/biointerchange/life_science_registry.rb', line 969 def self.bindingdb "http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=$id" end |
.biocatalogue ⇒ Object
509 510 511 |
# File 'lib/biointerchange/life_science_registry.rb', line 509 def self.biocatalogue "http://www.biocatalogue.org/services/$id" end |
.biocyc ⇒ Object
721 722 723 |
# File 'lib/biointerchange/life_science_registry.rb', line 721 def self.biocyc "http://biocyc.org/ECOLI/NEW-IMAGE?object=$id" end |
.biogrid ⇒ Object
217 218 219 |
# File 'lib/biointerchange/life_science_registry.rb', line 217 def self.biogrid "http://thebiogrid.org/$id" end |
.biomagresbank ⇒ Object
1345 1346 1347 |
# File 'lib/biointerchange/life_science_registry.rb', line 1345 def self.biomagresbank "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$id" end |
.biomodels ⇒ Object
29 30 31 |
# File 'lib/biointerchange/life_science_registry.rb', line 29 def self.biomodels "http://www.ebi.ac.uk/biomodels-main/$id" end |
.bionemo ⇒ Object
1349 1350 1351 |
# File 'lib/biointerchange/life_science_registry.rb', line 1349 def self.bionemo "http://bionemo.bioinfo.cnio.es/Run.cgi?rm=mode4&result=$id" end |
.bionumbers ⇒ Object
377 378 379 |
# File 'lib/biointerchange/life_science_registry.rb', line 377 def self.bionumbers "http://www.bionumbers.hms.harvard.edu/bionumber.aspx?s=y&id=$id&ver=1" end |
.biopax_l2 ⇒ Object
1353 1354 1355 |
# File 'lib/biointerchange/life_science_registry.rb', line 1353 def self.biopax_l2 "http://www.biopax.org/release/biopax-level2.owl#$id" end |
.biopax_l3 ⇒ Object
1357 1358 1359 |
# File 'lib/biointerchange/life_science_registry.rb', line 1357 def self.biopax_l3 "http://www.biopax.org/release/biopax-level3.owl#$id" end |
.biopixie ⇒ Object
1361 1362 1363 |
# File 'lib/biointerchange/life_science_registry.rb', line 1361 def self.biopixie "http://avis.princeton.edu/pixie/viewgraph.php?graphID=$id" end |
.bioportal ⇒ Object
693 694 695 |
# File 'lib/biointerchange/life_science_registry.rb', line 693 def self.bioportal "http://bioportal.bioontology.org/ontologies/$id" end |
.biosystems ⇒ Object
369 370 371 |
# File 'lib/biointerchange/life_science_registry.rb', line 369 def self.biosystems "http://www.ncbi.nlm.nih.gov/biosystems/$id" end |
.biozon ⇒ Object
1365 1366 1367 |
# File 'lib/biointerchange/life_science_registry.rb', line 1365 def self.biozon "http://biozon.org/Biozon/Profile/$id" end |
.bmph ⇒ Object
1369 1370 1371 |
# File 'lib/biointerchange/life_science_registry.rb', line 1369 def self.bmph "http://www.expasy.org/cgi-bin/show_image?$id" end |
.bodymap ⇒ Object
1373 1374 1375 |
# File 'lib/biointerchange/life_science_registry.rb', line 1373 def self.bodymap "http://bodymap.ims.u-tokyo.ac.jp/[?human/mouse]/gs_card.php?gs=$id" end |
.bold ⇒ Object
581 582 583 |
# File 'lib/biointerchange/life_science_registry.rb', line 581 def self.bold "http://www.barcodinglife.com/views/taxbrowser.php?taxid=$id" end |
.bps ⇒ Object
1377 1378 1379 |
# File 'lib/biointerchange/life_science_registry.rb', line 1377 def self.bps "http://bps.rutgers.edu/atlas/bp_record/$id" end |
.brenda ⇒ Object
265 266 267 |
# File 'lib/biointerchange/life_science_registry.rb', line 265 def self.brenda "http://www.brenda-enzymes.org/php/result_flat.php4?ecno=$id" end |
.bsd ⇒ Object
1381 1382 1383 |
# File 'lib/biointerchange/life_science_registry.rb', line 1381 def self.bsd "http://bsd.cme.msu.edu/jsp/InfoController.jsp?object=Strain&id=S_$id" end |
.bsorf ⇒ Object
1385 1386 1387 |
# File 'lib/biointerchange/life_science_registry.rb', line 1385 def self.bsorf "http://bacillus.genome.jp/cgi-bin/BSORF_data_view.pl?ACCESSION=$id" end |
.buchnerabase ⇒ Object
1389 1390 1391 |
# File 'lib/biointerchange/life_science_registry.rb', line 1389 def self.buchnerabase "http://www.york.ac.uk/res/thomas/Buchnerabase/resources/gene_page_aps.cfm?BBnum=$id" end |
.bykdb ⇒ Object
937 938 939 |
# File 'lib/biointerchange/life_science_registry.rb', line 937 def self.bykdb "http://bykdb.ibcp.fr/data/html/$id.html" end |
.cage_ctss ⇒ Object
1393 1394 1395 |
# File 'lib/biointerchange/life_science_registry.rb', line 1393 def self.cage_ctss "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryCtss.php?ctss_id=$id" end |
.cage_library ⇒ Object
1397 1398 1399 |
# File 'lib/biointerchange/life_science_registry.rb', line 1397 def self.cage_library "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryLibrary.php?libid=$id" end |
.cage_tc ⇒ Object
1401 1402 1403 |
# File 'lib/biointerchange/life_science_registry.rb', line 1401 def self.cage_tc "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryTss.php?tss_id=$id" end |
.cage_tu ⇒ Object
1405 1406 1407 |
# File 'lib/biointerchange/life_science_registry.rb', line 1405 def self.cage_tu "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryTu.php?tu_id=$id" end |
.cancergenes ⇒ Object
1409 1410 1411 |
# File 'lib/biointerchange/life_science_registry.rb', line 1409 def self.cancergenes "http://cbio.mskcc.org/Public/products/human_mapped/Mapback_html/$id.html" end |
.cangem ⇒ Object
1413 1414 1415 |
# File 'lib/biointerchange/life_science_registry.rb', line 1413 def self.cangem "http://www.cangem.org/index.php?gene=$id" end |
.carpedb_gene ⇒ Object
1417 1418 1419 |
# File 'lib/biointerchange/life_science_registry.rb', line 1417 def self.carpedb_gene "http://www.carpedb.ua.edu/summary.cfm?id=$id" end |
.carpedb_reference ⇒ Object
1421 1422 1423 |
# File 'lib/biointerchange/life_science_registry.rb', line 1421 def self.carpedb_reference "http://www.carpedb.ua.edu/public.cfm?id=$id" end |
.cas ⇒ Object
877 878 879 |
# File 'lib/biointerchange/life_science_registry.rb', line 877 def self.cas "http://commonchemistry.org/ChemicalDetail.aspx?ref=$id" end |
.catdb ⇒ Object
1425 1426 1427 |
# File 'lib/biointerchange/life_science_registry.rb', line 1425 def self.catdb "http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/consult_project.pl?project_id=$id" end |
.cath ⇒ Object
781 782 783 |
# File 'lib/biointerchange/life_science_registry.rb', line 781 def self.cath "http://www.cathdb.info/cathnode/$id" end |
.cattleqtldb ⇒ Object
1429 1430 1431 |
# File 'lib/biointerchange/life_science_registry.rb', line 1429 def self.cattleqtldb "http://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_ID=$id" end |
.cazy ⇒ Object
725 726 727 |
# File 'lib/biointerchange/life_science_registry.rb', line 725 def self.cazy "http://www.cazy.org/$id.html" end |
.ccd ⇒ Object
405 406 407 |
# File 'lib/biointerchange/life_science_registry.rb', line 405 def self.ccd "http://www.ebi.ac.uk/msd-srv/msdchem/cgi-bin/cgi.pl?FUNCTION=record&ENTITY=CHEM_COMP&PRIMARYKEY=$id&APPLICATION=1" end |
.ccds ⇒ Object
1145 1146 1147 |
# File 'lib/biointerchange/life_science_registry.rb', line 1145 def self.ccds "http://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$id" end |
.ccm ⇒ Object
1433 1434 1435 |
# File 'lib/biointerchange/life_science_registry.rb', line 1433 def self.ccm "http://cancer.cellmap.org/cellmap/record.do?id=$id" end |
.cdd ⇒ Object
429 430 431 |
# File 'lib/biointerchange/life_science_registry.rb', line 429 def self.cdd "http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$id" end |
.cellimage ⇒ Object
953 954 955 |
# File 'lib/biointerchange/life_science_registry.rb', line 953 def self.cellimage "http://cellimagelibrary.org/images/$id" end |
.cgd ⇒ Object
529 530 531 |
# File 'lib/biointerchange/life_science_registry.rb', line 529 def self.cgd "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$id" end |
.cged ⇒ Object
1437 1438 1439 |
# File 'lib/biointerchange/life_science_registry.rb', line 1437 def self.cged "http://lifesciencedb.jp/cgi-bin/cged/detail.cgi?ci=3&cg=$id" end |
.cgnc ⇒ Object
1441 1442 1443 |
# File 'lib/biointerchange/life_science_registry.rb', line 1441 def self.cgnc "http://www.agnc.msstate.edu/GeneReport.aspx?a=$id" end |
.cgsc ⇒ Object
1025 1026 1027 |
# File 'lib/biointerchange/life_science_registry.rb', line 1025 def self.cgsc "http://cgsc.biology.yale.edu/Site.php?ID=$id" end |
.chebi ⇒ Object
9 10 11 |
# File 'lib/biointerchange/life_science_registry.rb', line 9 def self.chebi "http://www.ebi.ac.uk/chebi/searchId.do?chebiId=$id" end |
.chembank ⇒ Object
521 522 523 |
# File 'lib/biointerchange/life_science_registry.rb', line 521 def self.chembank "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=$id" end |
.chembl ⇒ Object
1445 1446 1447 |
# File 'lib/biointerchange/life_science_registry.rb', line 1445 def self.chembl "https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/$id" end |
.chembl_compound ⇒ Object
317 318 319 |
# File 'lib/biointerchange/life_science_registry.rb', line 317 def self.chembl_compound "https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/$id" end |
.chembl_target ⇒ Object
321 322 323 |
# File 'lib/biointerchange/life_science_registry.rb', line 321 def self.chembl_target "https://www.ebi.ac.uk/chembldb/index.php/target/inspect/$id" end |
.chemdb ⇒ Object
981 982 983 |
# File 'lib/biointerchange/life_science_registry.rb', line 981 def self.chemdb "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$id" end |
.chemidplus ⇒ Object
365 366 367 |
# File 'lib/biointerchange/life_science_registry.rb', line 365 def self.chemidplus "http://chem.sis.nlm.nih.gov/chemidplus/direct.jsp?regno=$id" end |
.chemspider ⇒ Object
501 502 503 |
# File 'lib/biointerchange/life_science_registry.rb', line 501 def self.chemspider "http://www.chemspider.com/Chemical-Structure.$id.html" end |
.chickenqtldb ⇒ Object
1449 1450 1451 |
# File 'lib/biointerchange/life_science_registry.rb', line 1449 def self.chickenqtldb "http://www.animalgenome.org/cgi-bin/QTLdb/GG/qdetails?QTL_ID=$id" end |
.chickvd ⇒ Object
1453 1454 1455 |
# File 'lib/biointerchange/life_science_registry.rb', line 1453 def self.chickvd "http://chicken.genomics.org.cn/chicken/jsp/gene_report.jsp?gene_id=$id" end |
.chromdb ⇒ Object
1457 1458 1459 |
# File 'lib/biointerchange/life_science_registry.rb', line 1457 def self.chromdb "http://www.chromdb.org/gene_record.html?g=$id" end |
.cid ⇒ Object
1461 1462 1463 |
# File 'lib/biointerchange/life_science_registry.rb', line 1461 def self.cid "http://oxytricha.princeton.edu/cgi-bin/get_MDS_IES_Info.cgi?num=$id" end |
.cisred ⇒ Object
1465 1466 1467 |
# File 'lib/biointerchange/life_science_registry.rb', line 1465 def self.cisred "http://www.cisred.org/[?species]/gene_view?ensembl_id=$id" end |
.citexplore ⇒ Object
1165 1166 1167 |
# File 'lib/biointerchange/life_science_registry.rb', line 1165 def self.citexplore "http://www.ebi.ac.uk/citexplore/citationDetails.do?dataSource=MED&externalId=$id" end |
.cleanest ⇒ Object
1469 1470 1471 |
# File 'lib/biointerchange/life_science_registry.rb', line 1469 def self.cleanest "http://verdi.kobic.re.kr/cleanEST/library_view.jsp?libid=$id" end |
.cleanex ⇒ Object
1473 1474 1475 |
# File 'lib/biointerchange/life_science_registry.rb', line 1473 def self.cleanex "http://www.cleanex.isb-sib.ch/cgi-bin/get_doc?db=cleanex&format=nice&entry=$id" end |
.clibe ⇒ Object
1477 1478 1479 |
# File 'lib/biointerchange/life_science_registry.rb', line 1477 def self.clibe "http://bidd.nus.edu.sg/group/CLiBE/Detail.asp?ID=$id" end |
.clinicaltrials ⇒ Object
497 498 499 |
# File 'lib/biointerchange/life_science_registry.rb', line 497 def self.clinicaltrials "http://clinicaltrials.gov/ct2/show/$id" end |
.cmd ⇒ Object
1481 1482 1483 |
# File 'lib/biointerchange/life_science_registry.rb', line 1481 def self.cmd "https://eds.gene.le.ac.uk/home.php?select_db=$id" end |
.cmgsdb_chain ⇒ Object
1485 1486 1487 |
# File 'lib/biointerchange/life_science_registry.rb', line 1485 def self.cmgsdb_chain "https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/viewChain.php?chainid=$id" end |
.cmgsdb_exp ⇒ Object
1489 1490 1491 |
# File 'lib/biointerchange/life_science_registry.rb', line 1489 def self.cmgsdb_exp "https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/rnaiexpt.php?expt=$id" end |
.cmgsdb_gene ⇒ Object
1493 1494 1495 |
# File 'lib/biointerchange/life_science_registry.rb', line 1493 def self.cmgsdb_gene "https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/viewGene.php?wbgene=$id" end |
.cmgsdb_protein ⇒ Object
1497 1498 1499 |
# File 'lib/biointerchange/life_science_registry.rb', line 1497 def self.cmgsdb_protein "https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/viewProtein.php?wpid=$id" end |
.cmr ⇒ Object
1073 1074 1075 |
# File 'lib/biointerchange/life_science_registry.rb', line 1073 def self.cmr "http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenePage.cgi?locus=$id" end |
.cnidbase ⇒ Object
1501 1502 1503 |
# File 'lib/biointerchange/life_science_registry.rb', line 1501 def self.cnidbase "http://cnidbase.com/index.cgi?cn_accession=$id" end |
.cno ⇒ Object
1505 1506 1507 |
# File 'lib/biointerchange/life_science_registry.rb', line 1505 def self.cno "http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#$id" end |
.cog ⇒ Object
1029 1030 1031 |
# File 'lib/biointerchange/life_science_registry.rb', line 1029 def self.cog "http://www.ncbi.nlm.nih.gov/COG/grace/cogenome.cgi?g=$id" end |
.cogat ⇒ Object
1509 1510 1511 |
# File 'lib/biointerchange/life_science_registry.rb', line 1509 def self.cogat "http://www.cognitiveatlas.org/ontology/cogat.owl#$id" end |
.cogeme ⇒ Object
1513 1514 1515 |
# File 'lib/biointerchange/life_science_registry.rb', line 1513 def self.cogeme "http://cogeme.ex.ac.uk/cgi-bin/uni.pl?uni=$id" end |
.combine_specifications ⇒ Object
957 958 959 |
# File 'lib/biointerchange/life_science_registry.rb', line 957 def self.combine_specifications "http://co.mbine.org/specifications/$id" end |
.come ⇒ Object
1517 1518 1519 |
# File 'lib/biointerchange/life_science_registry.rb', line 1517 def self.come "http://www.flymine.org/come/entry?gn=$id" end |
.comparative_genometrics ⇒ Object
1521 1522 1523 |
# File 'lib/biointerchange/life_science_registry.rb', line 1521 def self.comparative_genometrics "http://www2.unil.ch/comparativegenometrics/$id.htm" end |
.compluyeast2dpage ⇒ Object
1525 1526 1527 |
# File 'lib/biointerchange/life_science_registry.rb', line 1525 def self.compluyeast2dpage "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$id" end |
.compulyeast ⇒ Object
737 738 739 |
# File 'lib/biointerchange/life_science_registry.rb', line 737 def self.compulyeast "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$id" end |
.conoserver ⇒ Object
941 942 943 |
# File 'lib/biointerchange/life_science_registry.rb', line 941 def self.conoserver "http://www.conoserver.org/?page=card&table=protein&id=$id" end |
.consurfdb ⇒ Object
1529 1530 1531 |
# File 'lib/biointerchange/life_science_registry.rb', line 1529 def self.consurfdb "http://consurfdb.tau.ac.il/consurf_db/$id/[?chain_id]/" end |
.cope ⇒ Object
1533 1534 1535 |
# File 'lib/biointerchange/life_science_registry.rb', line 1533 def self.cope "http://www.copewithcytokines.de/cope.cgi?key=$id" end |
.corg ⇒ Object
1537 1538 1539 |
# File 'lib/biointerchange/life_science_registry.rb', line 1537 def self.corg "http://corg.eb.tuebingen.mpg.de/cgi-bin/get_gene_info_v38.pl?id=$id&species=[?species_name]&version=v38" end |
.corum ⇒ Object
1541 1542 1543 |
# File 'lib/biointerchange/life_science_registry.rb', line 1541 def self.corum "http://mips.helmholtz-muenchen.de/genre/proj/corum/complexdetails.html?id=$id" end |
.cosmic ⇒ Object
1545 1546 1547 |
# File 'lib/biointerchange/life_science_registry.rb', line 1545 def self.cosmic "http://www.sanger.ac.uk/perl/genetics/CGP/cosmic?action=byhist&s=4&hn=carcinoma&sn=ovary&ln=$id" end |
.coxpresdb ⇒ Object
1549 1550 1551 |
# File 'lib/biointerchange/life_science_registry.rb', line 1549 def self.coxpresdb "http://coxpresdb.jp/tis_map/$id/" end |
.cpndb ⇒ Object
1553 1554 1555 |
# File 'lib/biointerchange/life_science_registry.rb', line 1553 def self.cpndb "http://cpndb.cbr.nrc.ca/getRecord.php?id=$id" end |
.cpo ⇒ Object
1557 1558 1559 |
# File 'lib/biointerchange/life_science_registry.rb', line 1557 def self.cpo "http://phenomebrowser.net/cellphenotype.owl#$id" end |
.cpr ⇒ Object
1561 1562 1563 |
# File 'lib/biointerchange/life_science_registry.rb', line 1561 def self.cpr "http://purl.org/cpr/$id" end |
.cryptodb ⇒ Object
545 546 547 |
# File 'lib/biointerchange/life_science_registry.rb', line 545 def self.cryptodb "http://cryptodb.org/cryptodb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id" end |
.csa ⇒ Object
525 526 527 |
# File 'lib/biointerchange/life_science_registry.rb', line 525 def self.csa "http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/CSA/CSA_Site_Wrapper.pl?pdb=$id" end |
.csrd ⇒ Object
1565 1566 1567 |
# File 'lib/biointerchange/life_science_registry.rb', line 1565 def self.csrd "http://sundarlab.ucdavis.edu/cgi-bin/smrna_browse/?name=$id" end |
.cst ⇒ Object
1569 1570 1571 |
# File 'lib/biointerchange/life_science_registry.rb', line 1569 def self.cst "http://www.cellsignal.com/products/$id.html" end |
.ctad ⇒ Object
1573 1574 1575 |
# File 'lib/biointerchange/life_science_registry.rb', line 1573 def self.ctad "http://www.cta.lncc.br/modelo.php?idgene=$id&idmeta=11" end |
.ctcae ⇒ Object
1577 1578 1579 |
# File 'lib/biointerchange/life_science_registry.rb', line 1577 def self.ctcae "http://ncicb.nci.nih.gov/xml/owl/EVS/ctcae.owl#$id" end |
.ctd ⇒ Object
373 374 375 |
# File 'lib/biointerchange/life_science_registry.rb', line 373 def self.ctd "http://ctd.mdibl.org/detail.go?type=chem&acc=$id" end |
.ctga ⇒ Object
1581 1582 1583 |
# File 'lib/biointerchange/life_science_registry.rb', line 1581 def self.ctga "http://www.cags.org.ae/FMPro?-db=ctga.fp5&-format=/ctga/ctga_detail.html&-lay=main&Record_Category=Gene%20locus&-max=30&-recid=$id&-find=" end |
.cutdb ⇒ Object
1585 1586 1587 |
# File 'lib/biointerchange/life_science_registry.rb', line 1585 def self.cutdb "http://cutdb.burnham.org/relation/show/$id" end |
.cutg ⇒ Object
1589 1590 1591 |
# File 'lib/biointerchange/life_science_registry.rb', line 1589 def self.cutg "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=$id" end |
.cyanobase ⇒ Object
1593 1594 1595 |
# File 'lib/biointerchange/life_science_registry.rb', line 1593 def self.cyanobase "http://genome.kazusa.or.jp/cyanobase/Synechocystis/genes/$id" end |
.cybase ⇒ Object
1597 1598 1599 |
# File 'lib/biointerchange/life_science_registry.rb', line 1597 def self.cybase "http://research1t.imb.uq.edu.au/cybase/index.php?page=card&table=protein&id=$id" end |
.cyclebase ⇒ Object
1601 1602 1603 |
# File 'lib/biointerchange/life_science_registry.rb', line 1601 def self.cyclebase "http://www.cyclebase.org/displaygene.action?geneName=$id&taxId=[$taxid]" end |
.cygd ⇒ Object
961 962 963 |
# File 'lib/biointerchange/life_science_registry.rb', line 961 def self.cygd "http://mips.helmholtz-muenchen.de/genre/proj/yeast/singleGeneReport.html?entry=$id" end |
.dali ⇒ Object
1605 1606 1607 |
# File 'lib/biointerchange/life_science_registry.rb', line 1605 def self.dali "http://ekhidna.biocenter.helsinki.fi/dali_server/results/$id/index.html" end |
.dart ⇒ Object
1609 1610 1611 |
# File 'lib/biointerchange/life_science_registry.rb', line 1609 def self.dart "http://xin.cz3.nus.edu.sg/group/DRT/Detail.asp?ID=$id" end |
.datf ⇒ Object
1613 1614 1615 |
# File 'lib/biointerchange/life_science_registry.rb', line 1613 def self.datf "http://datf.cbi.pku.edu.cn/entry-display.php?id=$id" end |
.dbd ⇒ Object
1617 1618 1619 |
# File 'lib/biointerchange/life_science_registry.rb', line 1617 def self.dbd "http://dbd.mrc-lmb.cam.ac.uk/DBD/index.cgi?Search/Domain+domain:$id" end |
.dbest ⇒ Object
585 586 587 |
# File 'lib/biointerchange/life_science_registry.rb', line 585 def self.dbest "http://www.ncbi.nlm.nih.gov/nucest/$id" end |
.dbpabp ⇒ Object
1621 1622 1623 |
# File 'lib/biointerchange/life_science_registry.rb', line 1621 def self.dbpabp "http://ppa.bcf.ku.edu/DB_PABP/protein_details.jsp?prot_id=$id" end |
.dbpedia ⇒ Object
1625 1626 1627 |
# File 'lib/biointerchange/life_science_registry.rb', line 1625 def self.dbpedia "http://dbpedia.org/page/$id" end |
.dbprobe ⇒ Object
589 590 591 |
# File 'lib/biointerchange/life_science_registry.rb', line 589 def self.dbprobe "http://www.ncbi.nlm.nih.gov/genome/probe/reports/probereport.cgi?uid=$id" end |
.dbptm ⇒ Object
1629 1630 1631 |
# File 'lib/biointerchange/life_science_registry.rb', line 1629 def self.dbptm "http://dbptm.mbc.nctu.edu.tw/search_result.php?search_type=seq&swiss_id=$id" end |
.dbres ⇒ Object
1633 1634 1635 |
# File 'lib/biointerchange/life_science_registry.rb', line 1633 def self.dbres "http://bioinfo.au.tsinghua.edu.cn/dbRES/show_record.php?resid=$id" end |
.dbsnp ⇒ Object
593 594 595 |
# File 'lib/biointerchange/life_science_registry.rb', line 593 def self.dbsnp "http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$id" end |
.dbtgr ⇒ Object
1637 1638 1639 |
# File 'lib/biointerchange/life_science_registry.rb', line 1637 def self.dbtgr "http://dbtgr.hgc.jp/v2/id/$id" end |
.dc ⇒ Object
1641 1642 1643 |
# File 'lib/biointerchange/life_science_registry.rb', line 1641 def self.dc "http://purl.org/dc/terms/$id" end |
.dccp ⇒ Object
1645 1646 1647 |
# File 'lib/biointerchange/life_science_registry.rb', line 1645 def self.dccp "http://sdbi.sdut.edu.cn/DCCP/en/Detail1D.php?id=$id" end |
.ddbj ⇒ Object
1185 1186 1187 |
# File 'lib/biointerchange/life_science_registry.rb', line 1185 def self.ddbj "http://xml.ddbj.nig.ac.jp/rest/Invoke?service=GetEntry&method=getDDBJEntry&accession=$id" end |
.ddoc ⇒ Object
1649 1650 1651 |
# File 'lib/biointerchange/life_science_registry.rb', line 1649 def self.ddoc "http://apps.sanbi.ac.za/ddoc/details_general.php?geneID=$id" end |
.defensins_knowledgebase ⇒ Object
1653 1654 1655 |
# File 'lib/biointerchange/life_science_registry.rb', line 1653 def self.defensins_knowledgebase "http://defensins.bii.a-star.edu.sg/pops/pop_proteinDetails.php?id=$id" end |
.dhaplodb ⇒ Object
1657 1658 1659 |
# File 'lib/biointerchange/life_science_registry.rb', line 1657 def self.dhaplodb "http://orca.gen.kyushu-u.ac.jp/cgi-bin/gbrowse/humanBuild35/?name=$id" end |
.dictybase_gene ⇒ Object
1001 1002 1003 |
# File 'lib/biointerchange/life_science_registry.rb', line 1001 def self.dictybase_gene "http://dictybase.org/db/cgi-bin/gene_page.pl?gene_name=$id" end |
.dictybase_ref ⇒ Object
1661 1662 1663 |
# File 'lib/biointerchange/life_science_registry.rb', line 1661 def self.dictybase_ref "http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo=$id" end |
.dima ⇒ Object
1665 1666 1667 |
# File 'lib/biointerchange/life_science_registry.rb', line 1665 def self.dima "http://mips.helmholtz-muenchen.de/genre/proj/dima2/query/query.jsp?domain=$id" end |
.dip ⇒ Object
165 166 167 |
# File 'lib/biointerchange/life_science_registry.rb', line 165 def self.dip "http://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$id" end |
.disprot ⇒ Object
741 742 743 |
# File 'lib/biointerchange/life_science_registry.rb', line 741 def self.disprot "http://www.disprot.org/protein.php?id=$id" end |
.do ⇒ Object
865 866 867 |
# File 'lib/biointerchange/life_science_registry.rb', line 865 def self.do "http://disease-ontology.org/term/$id" end |
.doi ⇒ Object
81 82 83 |
# File 'lib/biointerchange/life_science_registry.rb', line 81 def self.doi "http://dx.doi.org/$id" end |
.domine ⇒ Object
1669 1670 1671 |
# File 'lib/biointerchange/life_science_registry.rb', line 1669 def self.domine "http://domine.utdallas.edu/cgi-bin/Domine?page=pfam&pfamid=$id" end |
.domins ⇒ Object
1673 1674 1675 |
# File 'lib/biointerchange/life_science_registry.rb', line 1673 def self.domins "http://www.domins.org/cgi/pdbcode.pl?id=$id" end |
.door ⇒ Object
1677 1678 1679 |
# File 'lib/biointerchange/life_science_registry.rb', line 1677 def self.door "http://csbl1.bmb.uga.edu/OperonDB/genedetail.php?id=$id" end |
.doqcs_model ⇒ Object
485 486 487 |
# File 'lib/biointerchange/life_science_registry.rb', line 485 def self.doqcs_model "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$id" end |
.doqcs_pathway ⇒ Object
489 490 491 |
# File 'lib/biointerchange/life_science_registry.rb', line 489 def self.doqcs_pathway "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$id" end |
.dosaccobs2dpage ⇒ Object
1681 1682 1683 |
# File 'lib/biointerchange/life_science_registry.rb', line 1681 def self.dosaccobs2dpage "http://www.dosac.unipa.it/cgi-bin/2d/2d.cgi?ac=$id" end |
.dpd ⇒ Object
1685 1686 1687 |
# File 'lib/biointerchange/life_science_registry.rb', line 1685 def self.dpd "http://dpdb.uab.es/cgi-bin/DPDB_s2.pl?Accession=$id" end |
.dpinteract ⇒ Object
1689 1690 1691 |
# File 'lib/biointerchange/life_science_registry.rb', line 1689 def self.dpinteract "http://arep.med.harvard.edu/ecoli_matrices/sco/$id.sco" end |
.dpr ⇒ Object
1693 1694 1695 |
# File 'lib/biointerchange/life_science_registry.rb', line 1693 def self.dpr "http://dnasu.asu.edu/DNASU/GetCloneDetail.do?cloneid=$id" end |
.dpvweb ⇒ Object
985 986 987 |
# File 'lib/biointerchange/life_science_registry.rb', line 985 def self.dpvweb "http://www.dpvweb.net/dpv/showdpv.php?dpvno=$id" end |
.dragondb_allele ⇒ Object
1045 1046 1047 |
# File 'lib/biointerchange/life_science_registry.rb', line 1045 def self.dragondb_allele "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=Allele" end |
.dragondb_dna ⇒ Object
1033 1034 1035 |
# File 'lib/biointerchange/life_science_registry.rb', line 1033 def self.dragondb_dna "http://antirrhinum.net/cgi-bin/ace/generic/seq/DragonDB?name=$id;class=Sequence" end |
.dragondb_locus ⇒ Object
1041 1042 1043 |
# File 'lib/biointerchange/life_science_registry.rb', line 1041 def self.dragondb_locus "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=Locus" end |
.dragondb_protein ⇒ Object
1037 1038 1039 |
# File 'lib/biointerchange/life_science_registry.rb', line 1037 def self.dragondb_protein "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=Peptide" end |
.drospege ⇒ Object
1697 1698 1699 |
# File 'lib/biointerchange/life_science_registry.rb', line 1697 def self.drospege "http://arthropods.eugenes.org/genepage/[?species_name]/$id]" end |
.drtf ⇒ Object
1701 1702 1703 |
# File 'lib/biointerchange/life_science_registry.rb', line 1701 def self.drtf "http://drtf.cbi.pku.edu.cn/gene_info.php?gn=$id" end |
.drugbank ⇒ Object
381 382 383 |
# File 'lib/biointerchange/life_science_registry.rb', line 381 def self.drugbank "http://www.drugbank.ca/drugs/$id" end |
.ec ⇒ Object
17 18 19 |
# File 'lib/biointerchange/life_science_registry.rb', line 17 def self.ec "http://www.chem.qmul.ac.uk/iubmb/$id" end |
.echobase ⇒ Object
745 746 747 |
# File 'lib/biointerchange/life_science_registry.rb', line 745 def self.echobase "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$id" end |
.eco ⇒ Object
209 210 211 |
# File 'lib/biointerchange/life_science_registry.rb', line 209 def self.eco "http://www.ebi.ac.uk/ontology-lookup/?termId=$id" end |
.ecocyc_compound ⇒ Object
1705 1706 1707 |
# File 'lib/biointerchange/life_science_registry.rb', line 1705 def self.ecocyc_compound "http://biocyc.org/ECOLI/NEW-IMAGE?type=COMPOUND&object=$id" end |
.ecocyc_enzyme ⇒ Object
1709 1710 1711 |
# File 'lib/biointerchange/life_science_registry.rb', line 1709 def self.ecocyc_enzyme "http://biocyc.org/ECOLI/NEW-IMAGE?type=ENZYME&object=$id" end |
.ecocyc_gene ⇒ Object
1713 1714 1715 |
# File 'lib/biointerchange/life_science_registry.rb', line 1713 def self.ecocyc_gene "http://biocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=$id" end |
.ecocyc_pathway ⇒ Object
1717 1718 1719 |
# File 'lib/biointerchange/life_science_registry.rb', line 1717 def self.ecocyc_pathway "http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=$id" end |
.ecocyc_reaction ⇒ Object
1721 1722 1723 |
# File 'lib/biointerchange/life_science_registry.rb', line 1721 def self.ecocyc_reaction "http://biocyc.org/ECOLI/NEW-IMAGE?type=REACTION&object=$id" end |
.ecocyc_ref ⇒ Object
1725 1726 1727 |
# File 'lib/biointerchange/life_science_registry.rb', line 1725 def self.ecocyc_ref "http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=$id" end |
.ecogene ⇒ Object
597 598 599 |
# File 'lib/biointerchange/life_science_registry.rb', line 597 def self.ecogene "http://ecogene.org/geneInfo.php?eg_id=$id" end |
.ecoliwiki ⇒ Object
1729 1730 1731 |
# File 'lib/biointerchange/life_science_registry.rb', line 1729 def self.ecoliwiki "http://ecoliwiki.net/colipedia/index.php/$id" end |
.edam ⇒ Object
701 702 703 |
# File 'lib/biointerchange/life_science_registry.rb', line 701 def self.edam "http://www.ebi.ac.uk/ontology-lookup/?termId=$id" end |
.edas_human ⇒ Object
1733 1734 1735 |
# File 'lib/biointerchange/life_science_registry.rb', line 1733 def self.edas_human "http://edas2.bioinf.fbb.msu.ru/human/summary.cgi?gene_id=$id" end |
.edas_mouse ⇒ Object
1737 1738 1739 |
# File 'lib/biointerchange/life_science_registry.rb', line 1737 def self.edas_mouse "http://edas2.bioinf.fbb.msu.ru/mouse/data.cgi?chromosome=$id" end |
.efsite ⇒ Object
1741 1742 1743 |
# File 'lib/biointerchange/life_science_registry.rb', line 1741 def self.efsite "http://ef-site.protein.osaka-u.ac.jp/eF-site/servlet/Summary?entry_id=$id" end |
.eggnog ⇒ Object
749 750 751 |
# File 'lib/biointerchange/life_science_registry.rb', line 749 def self.eggnog "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$id" end |
.ego ⇒ Object
1745 1746 1747 |
# File 'lib/biointerchange/life_science_registry.rb', line 1745 def self.ego "http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/ego/ego_report.pl?ego=$id" end |
.elm ⇒ Object
925 926 927 |
# File 'lib/biointerchange/life_science_registry.rb', line 925 def self.elm "http://elm.eu.org/elms/elmPages/$id.html" end |
.embl ⇒ Object
1173 1174 1175 |
# File 'lib/biointerchange/life_science_registry.rb', line 1173 def self.embl "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+EntryPage+-e+[EMBL:$id]+-view+EmblEntry" end |
.emglib ⇒ Object
1749 1750 1751 |
# File 'lib/biointerchange/life_science_registry.rb', line 1749 def self.emglib "http://pbil.univ-lyon1.fr/cgi-bin/acnuc-search-id?query=$id&db=GenBank" end |
.emim ⇒ Object
1753 1754 1755 |
# File 'lib/biointerchange/life_science_registry.rb', line 1753 def self.emim "http://discover.nci.nih.gov/mim/view.jsp?selection=map&MIM=$id" end |
.ena ⇒ Object
1141 1142 1143 |
# File 'lib/biointerchange/life_science_registry.rb', line 1141 def self.ena "http://www.ebi.ac.uk/ena/data/view/$id" end |
.endonet ⇒ Object
1757 1758 1759 |
# File 'lib/biointerchange/life_science_registry.rb', line 1757 def self.endonet "http://endonet.bioinf.med.uni-goettingen.de/hormonedetail?id=$id" end |
.ensembl ⇒ Object
13 14 15 |
# File 'lib/biointerchange/life_science_registry.rb', line 13 def self.ensembl "http://www.ensembl.org/id/$id" end |
.ensembl_bacteria ⇒ Object
753 754 755 |
# File 'lib/biointerchange/life_science_registry.rb', line 753 def self.ensembl_bacteria "http://bacteria.ensembl.org/[?species_name]/Gene/Summary?g=$id" end |
.ensembl_fungi ⇒ Object
769 770 771 |
# File 'lib/biointerchange/life_science_registry.rb', line 769 def self.ensembl_fungi "http://fungi.ensembl.org/[?species_name]/Gene/Summary?g=$id" end |
.ensembl_metazoa ⇒ Object
761 762 763 |
# File 'lib/biointerchange/life_science_registry.rb', line 761 def self. "http://metazoa.ensembl.org/[?species_name]/Gene/Summary?g=$id" end |
.ensembl_plant ⇒ Object
765 766 767 |
# File 'lib/biointerchange/life_science_registry.rb', line 765 def self.ensembl_plant "http://plants.ensembl.org/[?species_name]/Gene/Summary?g=$id" end |
.ensembl_protist ⇒ Object
757 758 759 |
# File 'lib/biointerchange/life_science_registry.rb', line 757 def self.ensembl_protist "http://protists.ensembl.org/[?species_name]/Gene/Summary?g=$id" end |
.enzyme ⇒ Object
1761 1762 1763 |
# File 'lib/biointerchange/life_science_registry.rb', line 1761 def self.enzyme "http://ca.expasy.org/enzyme/$id" end |
.epcondb ⇒ Object
1765 1766 1767 |
# File 'lib/biointerchange/life_science_registry.rb', line 1765 def self.epcondb "http://www.cbil.upenn.edu/epcondb42/showRecord.do?name=TranscriptRecordClasses.TranscriptRecordClass&project_id=GenomicsBC&primary_key=$id" end |
.epd ⇒ Object
1769 1770 1771 |
# File 'lib/biointerchange/life_science_registry.rb', line 1769 def self.epd "http://www.epd.isb-sib.ch/cgi-bin/get_doc?db=epd&format=nice&entry=$id" end |
.epgd ⇒ Object
1773 1774 1775 |
# File 'lib/biointerchange/life_science_registry.rb', line 1773 def self.epgd "http://epgd.biosino.org/EPGD/gene/geneinfor.jsp?geneID=$id" end |
.erd ⇒ Object
1777 1778 1779 |
# File 'lib/biointerchange/life_science_registry.rb', line 1777 def self.erd "http://bioinformatics.psb.ugent.be/webtools/rRNA/[lsu/[ssu]/data/$id" end |
.ergo ⇒ Object
1781 1782 1783 |
# File 'lib/biointerchange/life_science_registry.rb', line 1781 def self.ergo "http://www.ergo-light.com/ERGO/CGI/prot.cgi?prot=$id" end |
.ergr ⇒ Object
1785 1786 1787 |
# File 'lib/biointerchange/life_science_registry.rb', line 1785 def self.ergr "http://bioinfo.vipbg.vcu.edu/ERGR/geneinfo.php?id=$id" end |
.eropmoscow ⇒ Object
1789 1790 1791 |
# File 'lib/biointerchange/life_science_registry.rb', line 1789 def self.eropmoscow "http://erop.inbi.ras.ru/result2.php?PepName=$id" end |
.esldb ⇒ Object
1793 1794 1795 |
# File 'lib/biointerchange/life_science_registry.rb', line 1793 def self.esldb "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=$id" end |
.esther ⇒ Object
1797 1798 1799 |
# File 'lib/biointerchange/life_science_registry.rb', line 1797 def self.esther "http://bioweb.ensam.inra.fr/ESTHER/family?name=$id&class=Family" end |
.eugenes ⇒ Object
1801 1802 1803 |
# File 'lib/biointerchange/life_science_registry.rb', line 1801 def self.eugenes "http://eugenes.org:7072/.bin/fbidq.html?$id" end |
.euhcvdb ⇒ Object
773 774 775 |
# File 'lib/biointerchange/life_science_registry.rb', line 773 def self.euhcvdb "http://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$id" end |
.evoc ⇒ Object
1805 1806 1807 |
# File 'lib/biointerchange/life_science_registry.rb', line 1805 def self.evoc "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=$id" end |
.evola ⇒ Object
1809 1810 1811 |
# File 'lib/biointerchange/life_science_registry.rb', line 1809 def self.evola "http://www.h-invitational.jp/evola_main/annotation.cgi?hit=$id" end |
.explorenz ⇒ Object
1813 1814 1815 |
# File 'lib/biointerchange/life_science_registry.rb', line 1813 def self.explorenz "http://www.enzyme-database.org/query.php?ec=$id" end |
.eyesite ⇒ Object
1817 1818 1819 |
# File 'lib/biointerchange/life_science_registry.rb', line 1817 def self.eyesite "http://eyesite.cryst.bbk.ac.uk/cgi-bin/get_family_page.cgi?FAMILY=$id" end |
.ezcatdb ⇒ Object
1821 1822 1823 |
# File 'lib/biointerchange/life_science_registry.rb', line 1821 def self.ezcatdb "http://mbs.cbrc.jp/EzCatDB/search/get.do?dbcode=$id" end |
.fcp ⇒ Object
1825 1826 1827 |
# File 'lib/biointerchange/life_science_registry.rb', line 1825 def self.fcp "http://cgl.imim.es/fcp/fcp.php?struct=1&compactId=EC.$id" end |
.fgdb ⇒ Object
1829 1830 1831 |
# File 'lib/biointerchange/life_science_registry.rb', line 1829 def self.fgdb "http://mips.helmholtz-muenchen.de/genre/proj/FGDB/singleGeneReport.html?entry=$id" end |
.firedb ⇒ Object
1833 1834 1835 |
# File 'lib/biointerchange/life_science_registry.rb', line 1833 def self.firedb "http://firedb.bioinfo.cnio.es/Php/FireDB.php?pdbcode=$id" end |
.flight ⇒ Object
1837 1838 1839 |
# File 'lib/biointerchange/life_science_registry.rb', line 1837 def self.flight "http://flight.licr.org/browse/view_rnai_hits.jsp?project_id=[$project_id]&screen_id=$id" end |
.flybase ⇒ Object
113 114 115 |
# File 'lib/biointerchange/life_science_registry.rb', line 113 def self.flybase "http://flybase.org/reports/$id.html" end |
.flymine ⇒ Object
1841 1842 1843 |
# File 'lib/biointerchange/life_science_registry.rb', line 1841 def self.flymine "http://www.flymine.org/release-25.0/objectDetails.do?id=$id" end |
.flytf ⇒ Object
1845 1846 1847 |
# File 'lib/biointerchange/life_science_registry.rb', line 1845 def self.flytf "http://www.flytf.org/flytfmine/objectDetails.do?id=$id" end |
.frnadb ⇒ Object
1849 1850 1851 |
# File 'lib/biointerchange/life_science_registry.rb', line 1849 def self.frnadb "http://www.ncrna.org/frnadb/detail.html?i_name=$id" end |
.fugoid ⇒ Object
1853 1854 1855 |
# File 'lib/biointerchange/life_science_registry.rb', line 1853 def self.fugoid "http://fugoid.webhost.utexas.edu/introndata/full_display.cfm?intronID=$id" end |
.funpep ⇒ Object
1857 1858 1859 |
# File 'lib/biointerchange/life_science_registry.rb', line 1857 def self.funpep "http://swift.cmbi.kun.nl/swift/FUNPEP/gergo/$id/index.html" end |
.gabi ⇒ Object
601 602 603 |
# File 'lib/biointerchange/life_science_registry.rb', line 601 def self.gabi "http://gabi.rzpd.de/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$id&Mode=ShowBioObject" end |
.gallus_gbrowse ⇒ Object
1861 1862 1863 |
# File 'lib/biointerchange/life_science_registry.rb', line 1861 def self.gallus_gbrowse "http://birdbase.net/cgi-bin/gbrowse/gallus08/?name=$id" end |
.gdfr_est ⇒ Object
1865 1866 1867 |
# File 'lib/biointerchange/life_science_registry.rb', line 1865 def self.gdfr_est "http://www.rosaceae.org/bio/content/?title=&url=http://www.rosaceae.org/cgi-bin/gdr/gdr_ESTGB.cgi?clone_name=$id" end |
.gdfr_marker ⇒ Object
1869 1870 1871 |
# File 'lib/biointerchange/life_science_registry.rb', line 1869 def self.gdfr_marker "http://www.rosaceae.org/bio/content/?title=&url=http://www.rosaceae.org/cgi-bin/gdr/gdr_marker.cgi?MName_Result=$id" end |
.geisha ⇒ Object
1873 1874 1875 |
# File 'lib/biointerchange/life_science_registry.rb', line 1873 def self.geisha "http://geisha.arizona.edu/geisha/search.jsp?gene=$id" end |
.genage ⇒ Object
1877 1878 1879 |
# File 'lib/biointerchange/life_science_registry.rb', line 1877 def self.genage "http://genomics.senescence.info/genes/details.php?id=$id" end |
.genatlas ⇒ Object
777 778 779 |
# File 'lib/biointerchange/life_science_registry.rb', line 777 def self.genatlas "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$id" end |
.genbank ⇒ Object
1177 1178 1179 |
# File 'lib/biointerchange/life_science_registry.rb', line 1177 def self.genbank "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$id" end |
.gendis ⇒ Object
1881 1882 1883 |
# File 'lib/biointerchange/life_science_registry.rb', line 1881 def self.gendis "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=$id" end |
.gendr ⇒ Object
1885 1886 1887 |
# File 'lib/biointerchange/life_science_registry.rb', line 1885 def self.gendr "http://genomics.senescence.info/diet/details.php?id=$id" end |
.genecards ⇒ Object
1093 1094 1095 |
# File 'lib/biointerchange/life_science_registry.rb', line 1093 def self.genecards "http://www.genecards.org/cgi-bin/carddisp.pl?gene=$id" end |
.genedb ⇒ Object
397 398 399 |
# File 'lib/biointerchange/life_science_registry.rb', line 397 def self.genedb "http://www.genedb.org/gene/$id" end |
.genefarm ⇒ Object
785 786 787 |
# File 'lib/biointerchange/life_science_registry.rb', line 785 def self.genefarm "http://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$id" end |
.geneloc ⇒ Object
1889 1890 1891 |
# File 'lib/biointerchange/life_science_registry.rb', line 1889 def self.geneloc "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=$id" end |
.genenet ⇒ Object
1893 1894 1895 |
# File 'lib/biointerchange/life_science_registry.rb', line 1893 def self.genenet "http://wwwmgs.bionet.nsc.ru/mgs/gnw/genenet/viewer/$id.html" end |
.genenote ⇒ Object
1897 1898 1899 |
# File 'lib/biointerchange/life_science_registry.rb', line 1897 def self.genenote "http://bioinfo2.weizmann.ac.il/cgi-bin/genenote/GN_results.pl?keyword_type=2_gc_id&keyword=$id&data_type=norm2&results=yes" end |
.genetrap ⇒ Object
1901 1902 1903 |
# File 'lib/biointerchange/life_science_registry.rb', line 1901 def self.genetrap "http://pokey.ibme.utoronto.ca/clone_report.php?id=$id" end |
.genetree ⇒ Object
797 798 799 |
# File 'lib/biointerchange/life_science_registry.rb', line 797 def self.genetree "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$id" end |
.genetrees ⇒ Object
1905 1906 1907 |
# File 'lib/biointerchange/life_science_registry.rb', line 1905 def self.genetrees "http://genetrees.vbi.vt.edu/GetAlignment?al=$id" end |
.genolevures ⇒ Object
1909 1910 1911 |
# File 'lib/biointerchange/life_science_registry.rb', line 1909 def self.genolevures "http://www.genolevures.org/elt/$id" end |
.genomereviews ⇒ Object
1913 1914 1915 |
# File 'lib/biointerchange/life_science_registry.rb', line 1913 def self.genomereviews "http://www.ebi.ac.uk/integr8/OrganismSelection.do?action=makeCurrent&proteomeId=$id" end |
.genomernai ⇒ Object
1917 1918 1919 |
# File 'lib/biointerchange/life_science_registry.rb', line 1917 def self.genomernai "http://rnai.dkfz.de/GenomeRNAi/genedetails/$id" end |
.gensat ⇒ Object
1921 1922 1923 |
# File 'lib/biointerchange/life_science_registry.rb', line 1921 def self.gensat "http://www.ncbi.nlm.nih.gov/sites/entrez?db=gensat&cmd=retrieve&list_uids=$id" end |
.geo ⇒ Object
205 206 207 |
# File 'lib/biointerchange/life_science_registry.rb', line 205 def self.geo "http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=$id" end |
.germonline_gene ⇒ Object
1925 1926 1927 |
# File 'lib/biointerchange/life_science_registry.rb', line 1925 def self.germonline_gene "http://www.germonline.org/Homo_sapiens/geneview?db=core;gene=$id" end |
.germonline_marker ⇒ Object
1929 1930 1931 |
# File 'lib/biointerchange/life_science_registry.rb', line 1929 def self.germonline_marker "http://www.germonline.org/Homo_sapiens/markerview?marker=$id" end |
.ghr ⇒ Object
1933 1934 1935 |
# File 'lib/biointerchange/life_science_registry.rb', line 1933 def self.ghr "http://ghr.nlm.nih.gov/gene/$id" end |
.gi ⇒ Object
1937 1938 1939 |
# File 'lib/biointerchange/life_science_registry.rb', line 1937 def self.gi "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$id" end |
.giardiadb ⇒ Object
553 554 555 |
# File 'lib/biointerchange/life_science_registry.rb', line 553 def self.giardiadb "http://giardiadb.org/giardiadb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&primary_key=$id" end |
.gib ⇒ Object
1941 1942 1943 |
# File 'lib/biointerchange/life_science_registry.rb', line 1941 def self.gib "http://gib.genes.nig.ac.jp/single/index.php?spid=$id" end |
.gissd ⇒ Object
1945 1946 1947 |
# File 'lib/biointerchange/life_science_registry.rb', line 1945 def self.gissd "http://www.rna.whu.edu.cn/perl/gissd/get_seq_exon.cgi?intron_id=$id" end |
.glycomapsdb ⇒ Object
1949 1950 1951 |
# File 'lib/biointerchange/life_science_registry.rb', line 1949 def self.glycomapsdb "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=$id" end |
.glycomedb ⇒ Object
409 410 411 |
# File 'lib/biointerchange/life_science_registry.rb', line 409 def self.glycomedb "http://www.glycome-db.org/database/showStructure.action?glycomeId=$id" end |
.glyconavi ⇒ Object
1953 1954 1955 |
# File 'lib/biointerchange/life_science_registry.rb', line 1953 def self.glyconavi "http://ws.glyconavi.org/DbDetail/moldetail.aspx?moleculeID=$id" end |
.gnd ⇒ Object
1957 1958 1959 |
# File 'lib/biointerchange/life_science_registry.rb', line 1957 def self.gnd "http://nava.liacs.nl/cgi-bin/nava.py?id=$id" end |
.go ⇒ Object
89 90 91 |
# File 'lib/biointerchange/life_science_registry.rb', line 89 def self.go "http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:$id" end |
.goa ⇒ Object
729 730 731 |
# File 'lib/biointerchange/life_science_registry.rb', line 729 def self.goa "http://www.ebi.ac.uk/QuickGO/GTerm?id=$id" end |
.gold ⇒ Object
1961 1962 1963 |
# File 'lib/biointerchange/life_science_registry.rb', line 1961 def self.gold "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$id" end |
.gopad ⇒ Object
1965 1966 1967 |
# File 'lib/biointerchange/life_science_registry.rb', line 1965 def self.gopad "http://bcl.med.harvard.edu/proteomics/proj/gopart/gopart_all_tbl_view_detail_list.php?masterkey=$id" end |
.gp ⇒ Object
1969 1970 1971 |
# File 'lib/biointerchange/life_science_registry.rb', line 1969 def self.gp "http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=$id" end |
.gpcrdb ⇒ Object
789 790 791 |
# File 'lib/biointerchange/life_science_registry.rb', line 789 def self.gpcrdb "http://www.gpcr.org/7tm/proteins/$id" end |
.gpxmacrophage ⇒ Object
1973 1974 1975 |
# File 'lib/biointerchange/life_science_registry.rb', line 1973 def self.gpxmacrophage "http://gpxmea.gti.ed.ac.uk/GPX/cgi-bin/Scripts/showexperiment.cgi?HID=$id" end |
.gramene_gene ⇒ Object
673 674 675 |
# File 'lib/biointerchange/life_science_registry.rb', line 673 def self.gramene_gene "http://www.gramene.org/db/genes/search_gene?acc=$id" end |
.gramene_po ⇒ Object
1977 1978 1979 |
# File 'lib/biointerchange/life_science_registry.rb', line 1977 def self.gramene_po "http://www.gramene.org/db/ontology/search?id=$id" end |
.gramene_protein ⇒ Object
669 670 671 |
# File 'lib/biointerchange/life_science_registry.rb', line 669 def self.gramene_protein "http://www.gramene.org/db/ontology/search?id=$id" end |
.gramene_qtl ⇒ Object
681 682 683 |
# File 'lib/biointerchange/life_science_registry.rb', line 681 def self.gramene_qtl "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$id" end |
.gramene_ref ⇒ Object
1981 1982 1983 |
# File 'lib/biointerchange/life_science_registry.rb', line 1981 def self.gramene_ref "http://www.gramene.org/db/literature/pub_search?ref_id=$id" end |
.gramene_taxonomy ⇒ Object
677 678 679 |
# File 'lib/biointerchange/life_science_registry.rb', line 677 def self.gramene_taxonomy "http://www.gramene.org/db/ontology/search?id=$id" end |
.greengenes ⇒ Object
605 606 607 |
# File 'lib/biointerchange/life_science_registry.rb', line 605 def self.greengenes "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$id" end |
.greenphyldb ⇒ Object
1985 1986 1987 |
# File 'lib/biointerchange/life_science_registry.rb', line 1985 def self.greenphyldb "http://greenphyl.cirad.fr/v2/cgi-bin/family.cgi?id=$id" end |
.grin ⇒ Object
1989 1990 1991 |
# File 'lib/biointerchange/life_science_registry.rb', line 1989 def self.grin "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=$id" end |
.grin_taxonomy ⇒ Object
609 610 611 |
# File 'lib/biointerchange/life_science_registry.rb', line 609 def self.grin_taxonomy "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$id" end |
.grsdb ⇒ Object
1993 1994 1995 |
# File 'lib/biointerchange/life_science_registry.rb', line 1993 def self.grsdb "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$id" end |
.gtop ⇒ Object
1997 1998 1999 |
# File 'lib/biointerchange/life_science_registry.rb', line 1997 def self.gtop "http://spock.genes.nig.ac.jp/~genome/cgi-bin/mas.pl.cgi?org=[?species]&gene=$id" end |
.gtrdb ⇒ Object
2001 2002 2003 |
# File 'lib/biointerchange/life_science_registry.rb', line 2001 def self.gtrdb "http://gtrnadb.ucsc.edu/$id" end |
.gxa ⇒ Object
1149 1150 1151 |
# File 'lib/biointerchange/life_science_registry.rb', line 1149 def self.gxa "http://www.ebi.ac.uk/gxa/gene/$id" end |
.gxd ⇒ Object
2005 2006 2007 |
# File 'lib/biointerchange/life_science_registry.rb', line 2005 def self.gxd "http://gbrowse.informatics.jax.org/cgi-bin/gbrowse/mouse_current/?name=$id" end |
.hagr ⇒ Object
2009 2010 2011 |
# File 'lib/biointerchange/life_science_registry.rb', line 2009 def self.hagr "http://genomics.senescence.info/genes/entry.php?hgnc=$id" end |
.hamap ⇒ Object
1017 1018 1019 |
# File 'lib/biointerchange/life_science_registry.rb', line 1017 def self.hamap "http://us.expasy.org/unirule/$id" end |
.hapmap ⇒ Object
2013 2014 2015 |
# File 'lib/biointerchange/life_science_registry.rb', line 2013 def self.hapmap "http://snp.cshl.org/cgi-perl/gbrowse/hapmap27_B36/?name=$id" end |
.hbvar ⇒ Object
2017 2018 2019 |
# File 'lib/biointerchange/life_science_registry.rb', line 2017 def self.hbvar "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=$id" end |
.hc ⇒ Object
2021 2022 2023 |
# File 'lib/biointerchange/life_science_registry.rb', line 2021 def self.hc "http://www.mesquiteproject.org/ontology/Habronattus/$id.html" end |
.hcnet ⇒ Object
2025 2026 2027 |
# File 'lib/biointerchange/life_science_registry.rb', line 2025 def self.hcnet "http://sbrg2.gist.ac.kr/hcnet/ver1.1/php/showDetailGeneInfo.php?unigeneID=$id" end |
.hcpin ⇒ Object
2029 2030 2031 |
# File 'lib/biointerchange/life_science_registry.rb', line 2029 def self.hcpin "http://nesg.org:9090/HCPIN/NShowProteinInfor.jsp?protein_id=$id" end |
.hcv ⇒ Object
2033 2034 2035 |
# File 'lib/biointerchange/life_science_registry.rb', line 2033 def self.hcv "http://hcv.lanl.gov/components/sequence/HCV/asearch/query_one.comp?se_id=$id" end |
.hdbas ⇒ Object
2037 2038 2039 |
# File 'lib/biointerchange/life_science_registry.rb', line 2037 def self.hdbas "http://jbirc.jbic.or.jp/h-dbas/locusOverview.do?db=all&hix=$id" end |
.hdbase ⇒ Object
2041 2042 2043 |
# File 'lib/biointerchange/life_science_registry.rb', line 2041 def self.hdbase "http://hdbase.org/cgi-bin/jdrf_gene.cgi?ll_id=$id" end |
.hdr ⇒ Object
2045 2046 2047 |
# File 'lib/biointerchange/life_science_registry.rb', line 2045 def self.hdr "http://research.nhgri.nih.gov/homeodomain/?mode=view&view=proteins&id=$id" end |
.hedgehog ⇒ Object
2049 2050 2051 |
# File 'lib/biointerchange/life_science_registry.rb', line 2049 def self.hedgehog "http://hedgehog.sfsu.edu/genes/$id.html" end |
.hegdb ⇒ Object
2053 2054 2055 |
# File 'lib/biointerchange/life_science_registry.rb', line 2053 def self.hegdb "http://genomes.urv.cat/HEG-DB/buscador/mostrar_statical.php?name=$id&aa=true&codon=true&rscu=true" end |
.hembase ⇒ Object
2057 2058 2059 |
# File 'lib/biointerchange/life_science_registry.rb', line 2057 def self.hembase "http://fmp-8.cit.nih.gov/hembase/detail.php?chrb=$id" end |
.hgnc ⇒ Object
2061 2062 2063 |
# File 'lib/biointerchange/life_science_registry.rb', line 2061 def self.hgnc "http://www.genenames.org/data/hgnc_data.php?hgnc_id=$id" end |
.hgnc_id ⇒ Object
301 302 303 |
# File 'lib/biointerchange/life_science_registry.rb', line 301 def self.hgnc_id "http://www.genenames.org/data/hgnc_data.php?hgnc_id=$id" end |
.hgpd ⇒ Object
2065 2066 2067 |
# File 'lib/biointerchange/life_science_registry.rb', line 2065 def self.hgpd "http://riodb.ibase.aist.go.jp/hgpd/cgi-bin/pg_locus_list.cgi?txt_srch_cdna_name=$id" end |
.hgsdd ⇒ Object
2069 2070 2071 |
# File 'lib/biointerchange/life_science_registry.rb', line 2069 def self.hgsdd "http://projects.tcag.ca/cgi-bin/seg_dup/dupbrowse/human_b35/?name=$id" end |
.hgvbase ⇒ Object
2073 2074 2075 |
# File 'lib/biointerchange/life_science_registry.rb', line 2073 def self.hgvbase "http://www.hgvbaseg2p.org/study/$id" end |
.hinv_locus ⇒ Object
613 614 615 |
# File 'lib/biointerchange/life_science_registry.rb', line 613 def self.hinv_locus "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$id" end |
.hinv_protein ⇒ Object
621 622 623 |
# File 'lib/biointerchange/life_science_registry.rb', line 621 def self.hinv_protein "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$id" end |
.hinv_transcript ⇒ Object
617 618 619 |
# File 'lib/biointerchange/life_science_registry.rb', line 617 def self.hinv_transcript "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$id" end |
.hits ⇒ Object
2077 2078 2079 |
# File 'lib/biointerchange/life_science_registry.rb', line 2077 def self.hits "http://hits.isb-sib.ch/cgi-bin/view_mot_entry?name=$id" end |
.hmdb ⇒ Object
193 194 195 |
# File 'lib/biointerchange/life_science_registry.rb', line 193 def self.hmdb "http://www.hmdb.ca/metabolites/$id" end |
.hmp ⇒ Object
2081 2082 2083 |
# File 'lib/biointerchange/life_science_registry.rb', line 2081 def self.hmp "http://www.hmpdacc-resources.org/cgi-bin/hmp_catalog/main.cgi?section=HmpSummary&page=displayHmpProject&hmp_id=$id" end |
.hmpd ⇒ Object
2085 2086 2087 |
# File 'lib/biointerchange/life_science_registry.rb', line 2085 def self.hmpd "http://bioinfo.nist.gov/hmpd/servlet/Search3?vswiss_id=$id" end |
.hogenom ⇒ Object
793 794 795 |
# File 'lib/biointerchange/life_science_registry.rb', line 793 def self.hogenom "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$id" end |
.hoinvgen ⇒ Object
2089 2090 2091 |
# File 'lib/biointerchange/life_science_registry.rb', line 2089 def self.hoinvgen "http://pbil.univ-lyon1.fr/cgi-bin/acnuc-search-id?query=$id&db=Hoinvprot&ident=1989108068" end |
.homd ⇒ Object
2093 2094 2095 |
# File 'lib/biointerchange/life_science_registry.rb', line 2093 def self.homd "http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$id&view=dynamic" end |
.homd_seq ⇒ Object
625 626 627 |
# File 'lib/biointerchange/life_science_registry.rb', line 625 def self.homd_seq "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$id" end |
.homd_taxon ⇒ Object
629 630 631 |
# File 'lib/biointerchange/life_science_registry.rb', line 629 def self.homd_taxon "http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$id&view=dynamic" end |
.homeodomain_resource ⇒ Object
2097 2098 2099 |
# File 'lib/biointerchange/life_science_registry.rb', line 2097 def self.homeodomain_resource "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=$id" end |
.homstrad ⇒ Object
2101 2102 2103 |
# File 'lib/biointerchange/life_science_registry.rb', line 2101 def self.homstrad "http://tardis.nibio.go.jp/cgi-bin/homstrad/getdata.cgi?id=$id" end |
.hoppsigen ⇒ Object
2105 2106 2107 |
# File 'lib/biointerchange/life_science_registry.rb', line 2105 def self.hoppsigen "http://pbil.univ-lyon1.fr/cgi-bin/acnuc-search-id?query=$id&db=Hoppsigen&ident=1989108068" end |
.horde ⇒ Object
2109 2110 2111 |
# File 'lib/biointerchange/life_science_registry.rb', line 2109 def self.horde "http://genome.weizmann.ac.il/cgi-bin/horde/showGene.pl?symbol=$id" end |
.hotsprint ⇒ Object
2113 2114 2115 |
# File 'lib/biointerchange/life_science_registry.rb', line 2113 def self.hotsprint "http://prism.ccbb.ku.edu.tr/hotsprint/result.php?queryId=$id" end |
.hovergen ⇒ Object
277 278 279 |
# File 'lib/biointerchange/life_science_registry.rb', line 277 def self.hovergen "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$id&db=HOVERGEN" end |
.howdy ⇒ Object
2117 2118 2119 |
# File 'lib/biointerchange/life_science_registry.rb', line 2117 def self.howdy "http://howdy.jst.go.jp/HOWDYCL/HOWDY.pl?Cls=GenBank&Key=UKEY&Val=$id" end |
.hpa ⇒ Object
1101 1102 1103 |
# File 'lib/biointerchange/life_science_registry.rb', line 1101 def self.hpa "http://www.proteinatlas.org/gene_info.php?ensembl_gene_id=$id" end |
.hpmr ⇒ Object
2121 2122 2123 |
# File 'lib/biointerchange/life_science_registry.rb', line 2121 def self.hpmr "http://www.receptome.org/HPMR/Families/Frameset_family.asp?FamId=$id" end |
.htpselex ⇒ Object
2125 2126 2127 |
# File 'lib/biointerchange/life_science_registry.rb', line 2125 def self.htpselex "http://www.isrec.isb-sib.ch/cgi-bin/htpselex/doc.cgi?id=$id" end |
.hubmed ⇒ Object
1181 1182 1183 |
# File 'lib/biointerchange/life_science_registry.rb', line 1181 def self.hubmed "http://www.hubmed.org/display.cgi?uids=$id" end |
.huge ⇒ Object
965 966 967 |
# File 'lib/biointerchange/life_science_registry.rb', line 965 def self.huge "http://www.kazusa.or.jp/huge/cgi/view_direct.cgi?id=$id" end |
.humancyc_compounds ⇒ Object
2129 2130 2131 |
# File 'lib/biointerchange/life_science_registry.rb', line 2129 def self.humancyc_compounds "http://biocyc.org/[?species]/NEW-IMAGE?type=COMPOUND&object=$id" end |
.humancyc_genes ⇒ Object
2133 2134 2135 |
# File 'lib/biointerchange/life_science_registry.rb', line 2133 def self.humancyc_genes "http://biocyc.org/[?species]/search-query?type=GENE&gname=$id" end |
.humancyc_pathways ⇒ Object
2137 2138 2139 |
# File 'lib/biointerchange/life_science_registry.rb', line 2137 def self.humancyc_pathways "http://biocyc.org/[?species]/NEW-IMAGE?type=PATHWAY&object=$id" end |
.humancyc_reactions ⇒ Object
2141 2142 2143 |
# File 'lib/biointerchange/life_science_registry.rb', line 2141 def self.humancyc_reactions "http://biocyc.org/[?species]/new-image?type=REACTION&object=$id" end |
.hupi ⇒ Object
2145 2146 2147 |
# File 'lib/biointerchange/life_science_registry.rb', line 2145 def self.hupi "http://hupi.ircm.qc.ca/hupi/gene/$id" end |
.icbs ⇒ Object
2149 2150 2151 |
# File 'lib/biointerchange/life_science_registry.rb', line 2149 def self.icbs "http://contact14.ics.uci.edu/htmlfiles/$id.mmol.html" end |
.icd ⇒ Object
37 38 39 |
# File 'lib/biointerchange/life_science_registry.rb', line 37 def self.icd "http://apps.who.int/classifications/icd10/browse/2010/en#/$id" end |
.icds ⇒ Object
2153 2154 2155 |
# File 'lib/biointerchange/life_science_registry.rb', line 2153 def self.icds "http://www-bio3d-igbmc.u-strasbg.fr/ICDS/cgi-bin/gscope_html_server.tcsh?ICDS&PagesWeb&GvioManu&UnICDS&$id" end |
.idbd ⇒ Object
2157 2158 2159 |
# File 'lib/biointerchange/life_science_registry.rb', line 2157 def self.idbd "http://biomarker.korea.ac.kr/disease/disease_view_en.jsp?group=1&id=$id" end |
.iev ⇒ Object
2161 2162 2163 |
# File 'lib/biointerchange/life_science_registry.rb', line 2161 def self.iev "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=$id" end |
.igtcd ⇒ Object
2165 2166 2167 |
# File 'lib/biointerchange/life_science_registry.rb', line 2165 def self.igtcd "http://www.genetrap.org/cgi-bin/annotation.py?gene_key=$id" end |
.ihop ⇒ Object
2169 2170 2171 |
# File 'lib/biointerchange/life_science_registry.rb', line 2169 def self.ihop "http://www.ihop-net.org/UniPub/iHOP/gs/$id.html" end |
.il2rgbase ⇒ Object
2173 2174 2175 |
# File 'lib/biointerchange/life_science_registry.rb', line 2173 def self.il2rgbase "http://research.nhgri.nih.gov/apps/scid/scid_reference.html#$id" end |
.imex ⇒ Object
437 438 439 |
# File 'lib/biointerchange/life_science_registry.rb', line 437 def self.imex "http://www.ebi.ac.uk/intact/imex/main.xhtml?query=$id" end |
.img_gene ⇒ Object
649 650 651 |
# File 'lib/biointerchange/life_science_registry.rb', line 649 def self.img_gene "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$id" end |
.img_taxon ⇒ Object
645 646 647 |
# File 'lib/biointerchange/life_science_registry.rb', line 645 def self.img_taxon "http://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&taxon_oid=$id" end |
.imgt_3dstructuredb ⇒ Object
2177 2178 2179 |
# File 'lib/biointerchange/life_science_registry.rb', line 2177 def self.imgt_3dstructuredb "http://imgt.cines.fr/3Dstructure-DB/cgi/details.cgi?pdbcode=$id" end |
.imgt_primerdb ⇒ Object
2181 2182 2183 |
# File 'lib/biointerchange/life_science_registry.rb', line 2181 def self.imgt_primerdb "http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$id&origin=view&source=PrList" end |
.imotdb ⇒ Object
2185 2186 2187 |
# File 'lib/biointerchange/life_science_registry.rb', line 2185 def self.imotdb "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=$id" end |
.imr ⇒ Object
2189 2190 2191 |
# File 'lib/biointerchange/life_science_registry.rb', line 2189 def self.imr "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=$id" end |
.innatedb ⇒ Object
2193 2194 2195 |
# File 'lib/biointerchange/life_science_registry.rb', line 2193 def self.innatedb "http://www.innatedb.ca/getGeneCard.do?id=$id" end |
.insrd ⇒ Object
2197 2198 2199 |
# File 'lib/biointerchange/life_science_registry.rb', line 2197 def self.insrd "http://anobase.vectorbase.org/ir/assay.php?id=$id" end |
.intact ⇒ Object
41 42 43 |
# File 'lib/biointerchange/life_science_registry.rb', line 41 def self.intact "http://www.ebi.ac.uk/intact/pages/details/details.xhtml?interactionAc=$id" end |
.integr8 ⇒ Object
2201 2202 2203 |
# File 'lib/biointerchange/life_science_registry.rb', line 2201 def self.integr8 "http://www.ebi.ac.uk/integr8/OrganismSelection.do?action=makeCurrent&proteomeId=$id" end |
.intenz ⇒ Object
1157 1158 1159 |
# File 'lib/biointerchange/life_science_registry.rb', line 1157 def self.intenz "http://www.ebi.ac.uk/intenz/query?cmd=SearchID&id=$id" end |
.interactive_fly ⇒ Object
2205 2206 2207 |
# File 'lib/biointerchange/life_science_registry.rb', line 2205 def self.interactive_fly "http://www.sdbonline.org/fly/$id.htm" end |
.interfil ⇒ Object
2209 2210 2211 |
# File 'lib/biointerchange/life_science_registry.rb', line 2209 def self.interfil "http://www.interfil.org/details.php?id=$id" end |
.interpare ⇒ Object
2213 2214 2215 |
# File 'lib/biointerchange/life_science_registry.rb', line 2213 def self.interpare "http://interpare.kobic.re.kr/cgi-bin/search_interface_from_interpare_new.cgi?pdb=$id" end |
.interpro ⇒ Object
45 46 47 |
# File 'lib/biointerchange/life_science_registry.rb', line 45 def self.interpro "http://www.ebi.ac.uk/interpro/IEntry?ac=$id" end |
.ipath ⇒ Object
2217 2218 2219 |
# File 'lib/biointerchange/life_science_registry.rb', line 2217 def self.ipath "http://escience.invitrogen.com/ipath/iPath.jsp?cn=unknown&mapid=$id" end |
.ipdestdab ⇒ Object
2221 2222 2223 |
# File 'lib/biointerchange/life_science_registry.rb', line 2221 def self.ipdestdab "http://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?$id" end |
.ipdmhc ⇒ Object
2225 2226 2227 |
# File 'lib/biointerchange/life_science_registry.rb', line 2225 def self.ipdmhc "http://www.ebi.ac.uk/cgi-bin/ipd/mhc/get_allele.cgi?$id" end |
.ipfam ⇒ Object
2229 2230 2231 |
# File 'lib/biointerchange/life_science_registry.rb', line 2229 def self.ipfam "http://pfam.sanger.ac.uk/[family/clan]?acc=$id" end |
.ipfam_proteome ⇒ Object
2233 2234 2235 |
# File 'lib/biointerchange/life_science_registry.rb', line 2233 def self.ipfam_proteome "http://pfam.sanger.ac.uk/proteome?taxId=$id" end |
.ipi ⇒ Object
161 162 163 |
# File 'lib/biointerchange/life_science_registry.rb', line 161 def self.ipi "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$id&format=default" end |
.iproclass ⇒ Object
2237 2238 2239 |
# File 'lib/biointerchange/life_science_registry.rb', line 2237 def self.iproclass "http://pir.georgetown.edu/cgi-bin/ipcEntry?id=$id" end |
.ird_segment ⇒ Object
633 634 635 |
# File 'lib/biointerchange/life_science_registry.rb', line 633 def self.ird_segment "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$id" end |
.irefweb ⇒ Object
441 442 443 |
# File 'lib/biointerchange/life_science_registry.rb', line 441 def self.irefweb "http://wodaklab.org/iRefWeb/interaction/show/$id" end |
.iresite ⇒ Object
2241 2242 2243 |
# File 'lib/biointerchange/life_science_registry.rb', line 2241 def self.iresite "http://www.iresite.org/IRESite_web.php?page=view&entry_id=$id" end |
.isbn ⇒ Object
245 246 247 |
# File 'lib/biointerchange/life_science_registry.rb', line 245 def self.isbn "http://isbndb.com/search-all.html?kw=$id" end |
.isfinder ⇒ Object
637 638 639 |
# File 'lib/biointerchange/life_science_registry.rb', line 637 def self.isfinder "http://www-is.biotoul.fr/index.html?is_special_name=$id" end |
.islander ⇒ Object
2245 2246 2247 |
# File 'lib/biointerchange/life_science_registry.rb', line 2245 def self.islander "http://kementari.bioinformatics.vt.edu/cgi-bin/island.cgi?island=$id" end |
.its2 ⇒ Object
2249 2250 2251 |
# File 'lib/biointerchange/life_science_registry.rb', line 2249 def self.its2 "http://its2.bioapps.biozentrum.uni-wuerzburg.de/cgi-bin/its2.pl?Taxon_id=$id&method=All" end |
.iuphar_family ⇒ Object
1081 1082 1083 |
# File 'lib/biointerchange/life_science_registry.rb', line 1081 def self.iuphar_family "http://www.iuphar-db.org/DATABASE/FamilyIntroductionForward?familyId=$id" end |
.iuphar_receptor ⇒ Object
989 990 991 |
# File 'lib/biointerchange/life_science_registry.rb', line 989 def self.iuphar_receptor "http://www.iuphar-db.org/GPCR/ReceptorDisplayForward?receptorID=$id" end |
.ivdb ⇒ Object
2253 2254 2255 |
# File 'lib/biointerchange/life_science_registry.rb', line 2253 def self.ivdb "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$id" end |
.jail ⇒ Object
2257 2258 2259 |
# File 'lib/biointerchange/life_science_registry.rb', line 2257 def self.jail "http://bioinf-apache.charite.de/jail/index.php?site=show_interfaces&pdb_id=$id" end |
.jcm ⇒ Object
641 642 643 |
# File 'lib/biointerchange/life_science_registry.rb', line 641 def self.jcm "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$id" end |
.jcsd ⇒ Object
893 894 895 |
# File 'lib/biointerchange/life_science_registry.rb', line 893 def self.jcsd "http://nikkajiweb.jst.go.jp/nikkaji_web/pages/top_e.jsp?CONTENT=syosai&SN=$id" end |
.jcvi_genprop ⇒ Object
2261 2262 2263 |
# File 'lib/biointerchange/life_science_registry.rb', line 2261 def self.jcvi_genprop "http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenomePropDefinition.cgi?prop_acc=$id" end |
.jws ⇒ Object
469 470 471 |
# File 'lib/biointerchange/life_science_registry.rb', line 469 def self.jws "http://jjj.mib.ac.uk/cgi-bin/processModelSelection.py?keytype=modelname&keyword=$id" end |
.kdbi ⇒ Object
2265 2266 2267 |
# File 'lib/biointerchange/life_science_registry.rb', line 2265 def self.kdbi "http://bidd.nus.edu.sg/group/KDBI/Detail-new.asp?ID=$id" end |
.kdd ⇒ Object
2269 2270 2271 |
# File 'lib/biointerchange/life_science_registry.rb', line 2269 def self.kdd "http://golgi.ana.ed.ac.uk/$id.html" end |
.kegg_brite ⇒ Object
2273 2274 2275 |
# File 'lib/biointerchange/life_science_registry.rb', line 2273 def self.kegg_brite "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br$id" end |
.kegg_compound ⇒ Object
53 54 55 |
# File 'lib/biointerchange/life_science_registry.rb', line 53 def self.kegg_compound "http://www.genome.jp/dbget-bin/www_bget?cpd:$id" end |
.kegg_disease ⇒ Object
2277 2278 2279 |
# File 'lib/biointerchange/life_science_registry.rb', line 2277 def self.kegg_disease "http://www.genome.jp/dbget-bin/www_bget?ds:$id" end |
.kegg_drug ⇒ Object
101 102 103 |
# File 'lib/biointerchange/life_science_registry.rb', line 101 def self.kegg_drug "http://www.genome.jp/dbget-bin/www_bget?dr:$id" end |
.kegg_gene ⇒ Object
261 262 263 |
# File 'lib/biointerchange/life_science_registry.rb', line 261 def self.kegg_gene "http://www.genome.jp/dbget-bin/www_bget?[?species]:$id" end |
.kegg_genome ⇒ Object
881 882 883 |
# File 'lib/biointerchange/life_science_registry.rb', line 881 def self.kegg_genome "http://www.genome.jp/dbget-bin/www_bget?gn:$id" end |
.kegg_glycan ⇒ Object
105 106 107 |
# File 'lib/biointerchange/life_science_registry.rb', line 105 def self.kegg_glycan "http://www.genome.jp/dbget-bin/www_bget?gl:$id" end |
.kegg_metagenome ⇒ Object
885 886 887 |
# File 'lib/biointerchange/life_science_registry.rb', line 885 def self. "http://www.genome.jp/kegg-bin/show_organism?org=$id" end |
.kegg_orthology ⇒ Object
417 418 419 |
# File 'lib/biointerchange/life_science_registry.rb', line 417 def self.kegg_orthology "http://www.genome.jp/dbget-bin/www_bget?ko:$id" end |
.kegg_pathway ⇒ Object
49 50 51 |
# File 'lib/biointerchange/life_science_registry.rb', line 49 def self.kegg_pathway "http://www.genome.jp/dbget-bin/www_bget?map$id" end |
.kegg_reaction ⇒ Object
57 58 59 |
# File 'lib/biointerchange/life_science_registry.rb', line 57 def self.kegg_reaction "http://www.genome.jp/dbget-bin/www_bget?rn:$id" end |
.kineticdb ⇒ Object
2281 2282 2283 |
# File 'lib/biointerchange/life_science_registry.rb', line 2281 def self.kineticdb "http://kineticdb.protres.ru/db/ind.pl?ind=$id" end |
.klotho ⇒ Object
2285 2286 2287 |
# File 'lib/biointerchange/life_science_registry.rb', line 2285 def self.klotho "http://www.biocheminfo.org/klotho/html/$id.html" end |
.l1base ⇒ Object
2289 2290 2291 |
# File 'lib/biointerchange/life_science_registry.rb', line 2289 def self.l1base "http://line1.bioapps.biozentrum.uni-wuerzburg.de/details.php?DBN=[?family_name]&UID=$id" end |
.leproma ⇒ Object
2293 2294 2295 |
# File 'lib/biointerchange/life_science_registry.rb', line 2293 def self.leproma "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$id&submit=Search" end |
.lgicdb ⇒ Object
329 330 331 |
# File 'lib/biointerchange/life_science_registry.rb', line 329 def self.lgicdb "http://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$id.php" end |
.ligandexpo ⇒ Object
237 238 239 |
# File 'lib/biointerchange/life_science_registry.rb', line 237 def self.ligandexpo "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$id&operation=ccid" end |
.ligasite ⇒ Object
2297 2298 2299 |
# File 'lib/biointerchange/life_science_registry.rb', line 2297 def self.ligasite "http://www.bigre.ulb.ac.be/Users/benoit/LigASite/index.php?apo=$id" end |
.lipidbank ⇒ Object
413 414 415 |
# File 'lib/biointerchange/life_science_registry.rb', line 413 def self.lipidbank "http://lipidbank.jp/cgi-bin/detail.cgi?id=$id" end |
.lipidmaps ⇒ Object
197 198 199 |
# File 'lib/biointerchange/life_science_registry.rb', line 197 def self.lipidmaps "http://www.lipidmaps.org/data/get_lm_lipids_dbgif.php?LM_ID=$id" end |
.lncrna ⇒ Object
2301 2302 2303 |
# File 'lib/biointerchange/life_science_registry.rb', line 2301 def self.lncrna "http://lncrnadb.com/Detail.aspx?TKeyID=$id" end |
.locate ⇒ Object
2305 2306 2307 |
# File 'lib/biointerchange/life_science_registry.rb', line 2305 def self.locate "http://locate.imb.uq.edu.au/cgi-bin/report.cgi?entry=$id" end |
.loqate ⇒ Object
2309 2310 2311 |
# File 'lib/biointerchange/life_science_registry.rb', line 2309 def self.loqate "http://www.weizmann.ac.il/molgen/loqate/gene/view/$id" end |
.lpfc ⇒ Object
2313 2314 2315 |
# File 'lib/biointerchange/life_science_registry.rb', line 2313 def self.lpfc "http://helix-web.stanford.edu/cgi-bin/textsearch.cgi?key=$id" end |
.lsmd ⇒ Object
2317 2318 2319 |
# File 'lib/biointerchange/life_science_registry.rb', line 2317 def self.lsmd "http://research.nhgri.nih.gov/lowe/db_retrieval.cgi?site_name=lowe&exon_intron_num=$id" end |
.macie ⇒ Object
289 290 291 |
# File 'lib/biointerchange/life_science_registry.rb', line 289 def self.macie "http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/getPage.pl?id=$id" end |
.magest ⇒ Object
2321 2322 2323 |
# File 'lib/biointerchange/life_science_registry.rb', line 2321 def self.magest "http://magest.hgc.jp/db/show_contig_by_entry_id/$id" end |
.maizegdb ⇒ Object
653 654 655 |
# File 'lib/biointerchange/life_science_registry.rb', line 653 def self.maizegdb "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$id" end |
.malaria ⇒ Object
2325 2326 2327 |
# File 'lib/biointerchange/life_science_registry.rb', line 2325 def self.malaria "http://sites.huji.ac.il/malaria/maps/$id.html" end |
.malisam ⇒ Object
2329 2330 2331 |
# File 'lib/biointerchange/life_science_registry.rb', line 2329 def self.malisam "http://prodata.swmed.edu/malisam/[$id1][$id2]/[$id1][$id2].html" end |
.mampol ⇒ Object
2333 2334 2335 |
# File 'lib/biointerchange/life_science_registry.rb', line 2333 def self.mampol "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=$id" end |
.mapviewer ⇒ Object
2337 2338 2339 |
# File 'lib/biointerchange/life_science_registry.rb', line 2337 def self.mapviewer "http://www.ncbi.nlm.nih.gov/projects/mapview/map_search.cgi?taxid=$id" end |
.matrixdb ⇒ Object
253 254 255 |
# File 'lib/biointerchange/life_science_registry.rb', line 253 def self.matrixdb "http://matrixdb.ibcp.fr/cgi-bin/model/report/default?name=$id&class=Association" end |
.mdpd ⇒ Object
2341 2342 2343 |
# File 'lib/biointerchange/life_science_registry.rb', line 2341 def self.mdpd "http://datam.i2r.a-star.edu.sg/mdpd/detail.php?symbol=$id" end |
.medline ⇒ Object
61 62 63 |
# File 'lib/biointerchange/life_science_registry.rb', line 61 def self.medline "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-view+MedlineFull+[medline-PMID:$id] " end |
.megamotifbase ⇒ Object
2345 2346 2347 |
# File 'lib/biointerchange/life_science_registry.rb', line 2345 def self.megamotifbase "http://caps.ncbs.res.in/cgi-bin/mini/databases/MegaMotifbase/megamotif1.cgi?code=$id&opt=h" end |
.mepd ⇒ Object
2349 2350 2351 |
# File 'lib/biointerchange/life_science_registry.rb', line 2349 def self.mepd "http://ani.embl.de:8080/mepd/MdbShowClone01?cloneID=$id" end |
.merna ⇒ Object
2353 2354 2355 |
# File 'lib/biointerchange/life_science_registry.rb', line 2353 def self.merna "http://merna.lbl.gov/search.php?type=simple&metal_ion=$id" end |
.merops ⇒ Object
221 222 223 |
# File 'lib/biointerchange/life_science_registry.rb', line 221 def self.merops "http://merops.sanger.ac.uk/cgi-bin/pepsum?id=$id" end |
.metacyc ⇒ Object
2357 2358 2359 |
# File 'lib/biointerchange/life_science_registry.rb', line 2357 def self. "http://biocyc.org/META/NEW-IMAGE?type=ENZYME&object=$id" end |
.metagrowth ⇒ Object
2361 2362 2363 |
# File 'lib/biointerchange/life_science_registry.rb', line 2361 def self. "http://igs-server.cnrs-mrs.fr/axenic-cgi/www_get_evdb?evdb+$id" end |
.metatiger ⇒ Object
2365 2366 2367 |
# File 'lib/biointerchange/life_science_registry.rb', line 2365 def self. "http://www.bioinformatics.leeds.ac.uk/metatiger/cgi_bin/pathway.cgi?organism=[$id1]&network=[$id2]" end |
.methycancer_cancer ⇒ Object
2369 2370 2371 |
# File 'lib/biointerchange/life_science_registry.rb', line 2369 def self.methycancer_cancer "http://methycancer.psych.ac.cn/cancerDetail.do?cancerid=$id" end |
.methycancer_clone ⇒ Object
2373 2374 2375 |
# File 'lib/biointerchange/life_science_registry.rb', line 2373 def self.methycancer_clone "http://methycancer.psych.ac.cn/cloneDetail.do?clonename=$id" end |
.methycancer_gene ⇒ Object
2377 2378 2379 |
# File 'lib/biointerchange/life_science_registry.rb', line 2377 def self.methycancer_gene "http://methycancer.psych.ac.cn/geneDetail.do?geneid=$id" end |
.methycancer_methylation ⇒ Object
2381 2382 2383 |
# File 'lib/biointerchange/life_science_registry.rb', line 2381 def self.methycancer_methylation "http://methycancer.psych.ac.cn/methylationDetail.do?id=$id" end |
.metnetdb ⇒ Object
2385 2386 2387 |
# File 'lib/biointerchange/life_science_registry.rb', line 2385 def self.metnetdb "http://metnetonline.org/browse_pathway2.php?pthID=$id" end |
.mfungd ⇒ Object
2389 2390 2391 |
# File 'lib/biointerchange/life_science_registry.rb', line 2389 def self.mfungd "http://mips.helmholtz-muenchen.de/genre/proj/mfungd/singleGeneReport.html?entry=$id" end |
.mgc ⇒ Object
2393 2394 2395 |
# File 'lib/biointerchange/life_science_registry.rb', line 2393 def self.mgc "http://mgc.nci.nih.gov/Tissues/LibInfo?LID=$id" end |
.mgg ⇒ Object
2397 2398 2399 |
# File 'lib/biointerchange/life_science_registry.rb', line 2397 def self.mgg "http://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$id" end |
.mgi ⇒ Object
141 142 143 |
# File 'lib/biointerchange/life_science_registry.rb', line 141 def self.mgi "http://www.informatics.jax.org/searches/accession_report.cgi?id=mgi:$id" end |
.mgiid ⇒ Object
1085 1086 1087 |
# File 'lib/biointerchange/life_science_registry.rb', line 1085 def self.mgiid "http://www.fp.ucalgary.ca/group2introns/$id.htm" end |
.mhcbn ⇒ Object
2401 2402 2403 |
# File 'lib/biointerchange/life_science_registry.rb', line 2401 def self.mhcbn "http://www.imtech.res.in/cgibin/mhcbn/display.pl?field=sno&value=$id" end |
.micado ⇒ Object
2405 2406 2407 |
# File 'lib/biointerchange/life_science_registry.rb', line 2405 def self.micado "http://genome.jouy.inra.fr/cgi-bin/micado/access.cgi?accessnumber=$id" end |
.microkit ⇒ Object
2409 2410 2411 |
# File 'lib/biointerchange/life_science_registry.rb', line 2409 def self.microkit "http://microkit.biocuckoo.org/html/$id.html" end |
.microsporidia ⇒ Object
557 558 559 |
# File 'lib/biointerchange/life_science_registry.rb', line 557 def self.microsporidia "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id" end |
.millipore_pathways ⇒ Object
2413 2414 2415 |
# File 'lib/biointerchange/life_science_registry.rb', line 2413 def self.millipore_pathways "http://www.millipore.com/pathways/pathviewer.do?searchTerms=&diseaseAreaIds=&pathwayId=$id" end |
.mimi ⇒ Object
2417 2418 2419 |
# File 'lib/biointerchange/life_science_registry.rb', line 2417 def self.mimi "http://mimi.ncibi.org/MimiWeb/gene-details-page-front.jsp?geneid=$id" end |
.mimodb ⇒ Object
929 930 931 |
# File 'lib/biointerchange/life_science_registry.rb', line 929 def self.mimodb "http://immunet.cn/mimodb/browse.php?table=mimoset&ID=$id" end |
.mint ⇒ Object
157 158 159 |
# File 'lib/biointerchange/life_science_registry.rb', line 157 def self.mint "http://mint.bio.uniroma2.it/mint/search/interactor.do?queryType=protein&interactorAc=$id" end |
.mipmod ⇒ Object
949 950 951 |
# File 'lib/biointerchange/life_science_registry.rb', line 949 def self.mipmod "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$id" end |
.mirbase ⇒ Object
293 294 295 |
# File 'lib/biointerchange/life_science_registry.rb', line 293 def self.mirbase "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$id" end |
.mirbase_mature ⇒ Object
869 870 871 |
# File 'lib/biointerchange/life_science_registry.rb', line 869 def self.mirbase_mature "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$id" end |
.miriam_collection ⇒ Object
33 34 35 |
# File 'lib/biointerchange/life_science_registry.rb', line 33 def self.miriam_collection "http://www.ebi.ac.uk/miriam/main/$id" end |
.miriam_resource ⇒ Object
697 698 699 |
# File 'lib/biointerchange/life_science_registry.rb', line 697 def self.miriam_resource "http://www.ebi.ac.uk/miriam/main/resources/$id" end |
.mirnamap ⇒ Object
2421 2422 2423 |
# File 'lib/biointerchange/life_science_registry.rb', line 2421 def self.mirnamap "http://mirnamap.mbc.nctu.edu.tw/php/mirna_entry.php?acc=$id" end |
.mirnest ⇒ Object
909 910 911 |
# File 'lib/biointerchange/life_science_registry.rb', line 909 def self.mirnest "http://lemur.amu.edu.pl/share/php/mirnest/search.php?search_term=$id" end |
.mirortho ⇒ Object
2425 2426 2427 |
# File 'lib/biointerchange/life_science_registry.rb', line 2425 def self.mirortho "http://cegg.unige.ch/mirortho/entry_details/$id" end |
.mist ⇒ Object
2429 2430 2431 |
# File 'lib/biointerchange/life_science_registry.rb', line 2429 def self.mist "http://genomics.ornl.gov/mist/view_organism.php?organism_id=$id" end |
.mitodat ⇒ Object
2433 2434 2435 |
# File 'lib/biointerchange/life_science_registry.rb', line 2433 def self.mitodat "http://www-lecb.ncifcrf.gov/mitoDat/$id.html" end |
.mitoproteome ⇒ Object
2437 2438 2439 |
# File 'lib/biointerchange/life_science_registry.rb', line 2437 def self.mitoproteome "http://www.mitoproteome.org/data/proteome/index.cgi?db=mito&pid=L$id" end |
.mmcd ⇒ Object
2441 2442 2443 |
# File 'lib/biointerchange/life_science_registry.rb', line 2441 def self.mmcd "http://mmcd.nmrfam.wisc.edu/test/cqsearch.py?cqid=$id" end |
.mmdb ⇒ Object
433 434 435 |
# File 'lib/biointerchange/life_science_registry.rb', line 433 def self.mmdb "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$id" end |
.mmmp ⇒ Object
281 282 283 |
# File 'lib/biointerchange/life_science_registry.rb', line 281 def self.mmmp "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$id" end |
.mmsinc ⇒ Object
2445 2446 2447 |
# File 'lib/biointerchange/life_science_registry.rb', line 2445 def self.mmsinc "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=$id" end |
.modeldb ⇒ Object
473 474 475 |
# File 'lib/biointerchange/life_science_registry.rb', line 473 def self.modeldb "http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$id" end |
.modomics ⇒ Object
2449 2450 2451 |
# File 'lib/biointerchange/life_science_registry.rb', line 2449 def self.modomics "http://modomics.genesilico.pl/modification?modification_id=$id" end |
.mokca ⇒ Object
2453 2454 2455 |
# File 'lib/biointerchange/life_science_registry.rb', line 2453 def self.mokca "http://strubiol.icr.ac.uk/extra/mokca/mut_by_prot.php?protein_q=$id" end |
.molmovdb ⇒ Object
2457 2458 2459 |
# File 'lib/biointerchange/life_science_registry.rb', line 2457 def self.molmovdb "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=$id" end |
.mosdb ⇒ Object
2461 2462 2463 |
# File 'lib/biointerchange/life_science_registry.rb', line 2461 def self.mosdb "http://mips.helmholtz-muenchen.de/plant/rice/reportsjsp/contigReport.jsp?contig_id=$id" end |
.mousecyc ⇒ Object
2465 2466 2467 |
# File 'lib/biointerchange/life_science_registry.rb', line 2465 def self.mousecyc "http://mousecyc.jax.org/MOUSE/NEW-IMAGE?type=NIL&object=$id" end |
.mp ⇒ Object
2469 2470 2471 |
# File 'lib/biointerchange/life_science_registry.rb', line 2469 def self.mp "http://www.informatics.jax.org/searches/Phat.cgi?id=$id" end |
.mpd ⇒ Object
2473 2474 2475 |
# File 'lib/biointerchange/life_science_registry.rb', line 2473 def self.mpd "http://phenome.jax.org/db/q?rtn=markers/details&reqsym=$id" end |
.mpi ⇒ Object
445 446 447 |
# File 'lib/biointerchange/life_science_registry.rb', line 445 def self.mpi "http://www.jcvi.org/mpidb/interaction.php?pname=$id" end |
.mtbd ⇒ Object
2477 2478 2479 |
# File 'lib/biointerchange/life_science_registry.rb', line 2477 def self.mtbd "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=$id" end |
.mtbreglist ⇒ Object
2481 2482 2483 |
# File 'lib/biointerchange/life_science_registry.rb', line 2481 def self.mtbreglist "http://pages.usherbrooke.ca/gaudreau/MtbRegList/www/genome_ir_manip.php?id=$id" end |
.mulpssm ⇒ Object
2485 2486 2487 |
# File 'lib/biointerchange/life_science_registry.rb', line 2485 def self.mulpssm "http://crick.mbu.iisc.ernet.in/mulpssm/cgi/disp_fam.cgi?dbase=[?pali/pfam]&name=$id" end |
.mutdb ⇒ Object
2489 2490 2491 |
# File 'lib/biointerchange/life_science_registry.rb', line 2489 def self.mutdb "http://mutdb.org/cgi-bin/mutdb.pl?id=[?gene_symbol]&geneid=$id" end |
.myco_lepra ⇒ Object
805 806 807 |
# File 'lib/biointerchange/life_science_registry.rb', line 805 def self.myco_lepra "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$id" end |
.myco_marinum ⇒ Object
809 810 811 |
# File 'lib/biointerchange/life_science_registry.rb', line 809 def self.myco_marinum "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$id" end |
.myco_smeg ⇒ Object
813 814 815 |
# File 'lib/biointerchange/life_science_registry.rb', line 813 def self.myco_smeg "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$id" end |
.myco_tuber ⇒ Object
801 802 803 |
# File 'lib/biointerchange/life_science_registry.rb', line 801 def self.myco_tuber "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$id" end |
.mycobank ⇒ Object
657 658 659 |
# File 'lib/biointerchange/life_science_registry.rb', line 657 def self.mycobank "http://www.mycobank.org/MycoTaxo.aspx?Link=T&Rec=$id" end |
.napp ⇒ Object
913 914 915 |
# File 'lib/biointerchange/life_science_registry.rb', line 913 def self.napp "http://napp.u-psud.fr/Niveau2.php?specie=$id" end |
.narcis ⇒ Object
889 890 891 |
# File 'lib/biointerchange/life_science_registry.rb', line 889 def self.narcis "http://www.narcis.nl/publication/RecordID/$id" end |
.nasc ⇒ Object
1049 1050 1051 |
# File 'lib/biointerchange/life_science_registry.rb', line 1049 def self.nasc "http://arabidopsis.info/StockInfo?NASC_id=$id" end |
.nascarrays ⇒ Object
2493 2494 2495 |
# File 'lib/biointerchange/life_science_registry.rb', line 2493 def self.nascarrays "http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=$id" end |
.natsdb ⇒ Object
2497 2498 2499 |
# File 'lib/biointerchange/life_science_registry.rb', line 2497 def self.natsdb "http://natsdb.cbi.pku.edu.cn/nats_list.php?sa_type=SA_20&represent=1&keyword_term=&species=[?species_name]&id=$id" end |
.nbrc ⇒ Object
661 662 663 |
# File 'lib/biointerchange/life_science_registry.rb', line 661 def self.nbrc "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$id" end |
.ncbi_protein ⇒ Object
1109 1110 1111 |
# File 'lib/biointerchange/life_science_registry.rb', line 1109 def self.ncbi_protein "http://www.ncbi.nlm.nih.gov/protein/$id" end |
.ncbigene ⇒ Object
257 258 259 |
# File 'lib/biointerchange/life_science_registry.rb', line 257 def self.ncbigene "http://www.ncbi.nlm.nih.gov/gene/$id" end |
.ncir ⇒ Object
2501 2502 2503 |
# File 'lib/biointerchange/life_science_registry.rb', line 2501 def self.ncir "http://prion.bchs.uh.edu/bp_type/individual_record_page$id.html" end |
.ncit ⇒ Object
505 506 507 |
# File 'lib/biointerchange/life_science_registry.rb', line 505 def self.ncit "http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=$id" end |
.ncl_resource ⇒ Object
2505 2506 2507 |
# File 'lib/biointerchange/life_science_registry.rb', line 2505 def self.ncl_resource "http://www.ucl.ac.uk/ncl/$id.shtml" end |
.ncrnas_database ⇒ Object
2509 2510 2511 |
# File 'lib/biointerchange/life_science_registry.rb', line 2509 def self.ncrnas_database "http://ncrnadb.trna.ibch.poznan.pl/scripts/getdesc.cgi?id=$id" end |
.ndb ⇒ Object
2513 2514 2515 |
# File 'lib/biointerchange/life_science_registry.rb', line 2513 def self.ndb "http://ndbserver.rutgers.edu/atlas/nmr/structures/id/$id/$id.html" end |
.neibank ⇒ Object
2517 2518 2519 |
# File 'lib/biointerchange/life_science_registry.rb', line 2517 def self.neibank "http://neibank.nei.nih.gov/cgi-bin/showDataTable.cgi?lib=$id" end |
.nembase ⇒ Object
2521 2522 2523 |
# File 'lib/biointerchange/life_science_registry.rb', line 2521 def self.nembase "http://www.nematodes.org/nembase4/cluster.php?cluster=$id" end |
.netbiochem ⇒ Object
2525 2526 2527 |
# File 'lib/biointerchange/life_science_registry.rb', line 2525 def self.netbiochem "http://library.med.utah.edu/NetBiochem/$id.htm" end |
.netpath ⇒ Object
2529 2530 2531 |
# File 'lib/biointerchange/life_science_registry.rb', line 2529 def self.netpath "http://www.netpath.org/molecule?molecule_id=$id" end |
.netpro ⇒ Object
2533 2534 2535 |
# File 'lib/biointerchange/life_science_registry.rb', line 2533 def self.netpro "http://www.interactions.net.in/index_molreport.jsp?id=$id" end |
.neumore ⇒ Object
2537 2538 2539 |
# File 'lib/biointerchange/life_science_registry.rb', line 2537 def self.neumore "http://neumore.cis.usouthal.edu/ontologies/NeuMORE-v0.1.owl#$id" end |
.neurolex ⇒ Object
453 454 455 |
# File 'lib/biointerchange/life_science_registry.rb', line 453 def self.neurolex "http://www.neurolex.org/wiki/$id" end |
.neuromorpho ⇒ Object
361 362 363 |
# File 'lib/biointerchange/life_science_registry.rb', line 361 def self.neuromorpho "http://neuromorpho.org/neuroMorpho/neuron_info.jsp?neuron_name=$id" end |
.neurondb ⇒ Object
357 358 359 |
# File 'lib/biointerchange/life_science_registry.rb', line 357 def self.neurondb "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$id" end |
.nextbio ⇒ Object
2541 2542 2543 |
# File 'lib/biointerchange/life_science_registry.rb', line 2541 def self.nextbio "http://www.nextbio.com/b/search/ov/$id" end |
.nextdb ⇒ Object
1009 1010 1011 |
# File 'lib/biointerchange/life_science_registry.rb', line 1009 def self.nextdb "http://nematode.lab.nig.ac.jp/cgi-bin/dbest/SrchByCosmid.sh?csmd=$id" end |
.nextprot ⇒ Object
873 874 875 |
# File 'lib/biointerchange/life_science_registry.rb', line 873 def self.nextprot "http://www.nextprot.org/db/entry/$id" end |
.niaest ⇒ Object
1053 1054 1055 |
# File 'lib/biointerchange/life_science_registry.rb', line 1053 def self.niaest "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$id" end |
.nif ⇒ Object
2545 2546 2547 |
# File 'lib/biointerchange/life_science_registry.rb', line 2545 def self.nif "http://www.neurolex.org/wiki/Category:$id" end |
.nif_agency ⇒ Object
2549 2550 2551 |
# File 'lib/biointerchange/life_science_registry.rb', line 2549 def self.nif_agency "http://www.neurolex.org/wiki/Category:$id" end |
.nif_backend ⇒ Object
2553 2554 2555 |
# File 'lib/biointerchange/life_science_registry.rb', line 2553 def self.nif_backend "http://www.neurolex.org/wiki/Category:$id" end |
.nif_cell ⇒ Object
2557 2558 2559 |
# File 'lib/biointerchange/life_science_registry.rb', line 2557 def self.nif_cell "http://www.neurolex.org/wiki/Category:$id" end |
.nif_dysfunction ⇒ Object
2561 2562 2563 |
# File 'lib/biointerchange/life_science_registry.rb', line 2561 def self.nif_dysfunction "http://www.neurolex.org/wiki/Category:$id" end |
.nif_grossanatomy ⇒ Object
2565 2566 2567 |
# File 'lib/biointerchange/life_science_registry.rb', line 2565 def self.nif_grossanatomy "http://www.neurolex.org/wiki/Category:$id" end |
.nif_investigation ⇒ Object
2569 2570 2571 |
# File 'lib/biointerchange/life_science_registry.rb', line 2569 def self.nif_investigation "http://www.neurolex.org/wiki/Category:$id" end |
.nif_molecule ⇒ Object
2573 2574 2575 |
# File 'lib/biointerchange/life_science_registry.rb', line 2573 def self.nif_molecule "http://www.neurolex.org/wiki/Category:$id" end |
.nif_subcellular ⇒ Object
457 458 459 |
# File 'lib/biointerchange/life_science_registry.rb', line 457 def self.nif_subcellular "http://www.neurolex.org/wiki/Category:$id" end |
.nmpdr ⇒ Object
2577 2578 2579 |
# File 'lib/biointerchange/life_science_registry.rb', line 2577 def self.nmpdr "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=$id" end |
.noncode ⇒ Object
917 918 919 |
# File 'lib/biointerchange/life_science_registry.rb', line 917 def self.noncode "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$id" end |
.norine ⇒ Object
2581 2582 2583 |
# File 'lib/biointerchange/life_science_registry.rb', line 2581 def self.norine "http://bioinfo.lifl.fr/norine/result.jsp?ID=$id" end |
.npd ⇒ Object
2585 2586 2587 |
# File 'lib/biointerchange/life_science_registry.rb', line 2585 def self.npd "http://npd.hgu.mrc.ac.uk/user/$id" end |
.nprd ⇒ Object
2589 2590 2591 |
# File 'lib/biointerchange/life_science_registry.rb', line 2589 def self.nprd "http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+LibInfo+-id+1JCHQ1bgqkg+-lib+$id" end |
.ntdb ⇒ Object
2593 2594 2595 |
# File 'lib/biointerchange/life_science_registry.rb', line 2593 def self.ntdb "http://ntdb.chem.cuhk.edu.hk/data/$id.htm" end |
.nucleardb ⇒ Object
1121 1122 1123 |
# File 'lib/biointerchange/life_science_registry.rb', line 1121 def self.nucleardb "http://www.receptors.org/NR/seq/DR/$id.html" end |
.nursa ⇒ Object
2597 2598 2599 |
# File 'lib/biointerchange/life_science_registry.rb', line 2597 def self.nursa "http://www.nursa.org/molecule.cfm?molType=[?molecule_type]&molId=$id" end |
.obi ⇒ Object
461 462 463 |
# File 'lib/biointerchange/life_science_registry.rb', line 461 def self.obi "http://purl.obolibrary.org/obo/$id" end |
.odb ⇒ Object
2601 2602 2603 |
# File 'lib/biointerchange/life_science_registry.rb', line 2601 def self.odb "http://www.genome.sk.ritsumei.ac.jp/odb/odb2.rb?org=[?species]&genome_id=[?genome_id]&genes=$id" end |
.ogd ⇒ Object
2605 2606 2607 |
# File 'lib/biointerchange/life_science_registry.rb', line 2605 def self.ogd "http://www.oomycete.org/ogd/sequence.html?sequence_id=$id" end |
.ogre ⇒ Object
2609 2610 2611 |
# File 'lib/biointerchange/life_science_registry.rb', line 2609 def self.ogre "http://drake.mcmaster.ca/cgi-bin/ogre/featurelist.pl?genome=$id" end |
.okcam ⇒ Object
2613 2614 2615 |
# File 'lib/biointerchange/life_science_registry.rb', line 2613 def self.okcam "http://okcam.cbi.pku.edu.cn/entry-info.php?id=$id" end |
.oma ⇒ Object
2617 2618 2619 |
# File 'lib/biointerchange/life_science_registry.rb', line 2617 def self.oma "http://www.omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$id" end |
.omia ⇒ Object
517 518 519 |
# File 'lib/biointerchange/life_science_registry.rb', line 517 def self.omia "http://omia.angis.org.au/retrieve.shtml?pid=$id" end |
.omim ⇒ Object
69 70 71 |
# File 'lib/biointerchange/life_science_registry.rb', line 69 def self.omim "http://www.ncbi.nlm.nih.gov/omim/$id" end |
.operondb ⇒ Object
2621 2622 2623 |
# File 'lib/biointerchange/life_science_registry.rb', line 2621 def self.operondb "http://operondb.cbcb.umd.edu/cgi-bin/operondb/pairs.cgi?taxon_id=$id" end |
.ordb ⇒ Object
2625 2626 2627 |
# File 'lib/biointerchange/life_science_registry.rb', line 2625 def self.ordb "http://senselab.med.yale.edu/ordb/eavdata.asp?o=$id" end |
.oreganno ⇒ Object
2629 2630 2631 |
# File 'lib/biointerchange/life_science_registry.rb', line 2629 def self.oreganno "http://www.oreganno.org/oregano/recordview.action?recid=$id" end |
.orenza ⇒ Object
2633 2634 2635 |
# File 'lib/biointerchange/life_science_registry.rb', line 2633 def self.orenza "http://www.orenza.u-psud.fr/query_by_ec.php?EC_number=EC%20$id" end |
.orfdb ⇒ Object
2637 2638 2639 |
# File 'lib/biointerchange/life_science_registry.rb', line 2637 def self.orfdb "http://orf.invitrogen.com/cgi-bin/ORFCard?&ORF=$id&set=UltimateORFs&hboxPath=keyword" end |
.organelle_db ⇒ Object
2641 2642 2643 |
# File 'lib/biointerchange/life_science_registry.rb', line 2641 def self.organelle_db "http://organelledb.lsi.umich.edu/gene.php?id=$id" end |
.oridb ⇒ Object
1137 1138 1139 |
# File 'lib/biointerchange/life_science_registry.rb', line 1137 def self.oridb "http://www.oridb.org/details1.php?id=$id" end |
.orphanet ⇒ Object
817 818 819 |
# File 'lib/biointerchange/life_science_registry.rb', line 817 def self.orphanet "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=EN&Expert=$id" end |
.orthodb ⇒ Object
821 822 823 |
# File 'lib/biointerchange/life_science_registry.rb', line 821 def self.orthodb "http://cegg.unige.ch/orthodb3/results?searchtext=$id" end |
.orthomcl ⇒ Object
2645 2646 2647 |
# File 'lib/biointerchange/life_science_registry.rb', line 2645 def self.orthomcl "http://orthomcl.org/cgi-bin/OrthoMclWeb.cgi?rm=sequenceList&groupac=$id" end |
.oryzabase_mutant ⇒ Object
2649 2650 2651 |
# File 'lib/biointerchange/life_science_registry.rb', line 2649 def self.oryzabase_mutant "http://www.shigen.nig.ac.jp/rice/oryzabase/genes/symbolDetailAction.do?mutantGeneId=$id" end |
.oryzabase_strain ⇒ Object
2653 2654 2655 |
# File 'lib/biointerchange/life_science_registry.rb', line 2653 def self.oryzabase_strain "http://www.shigen.nig.ac.jp/rice/oryzabase/nbrpStrains/nigDetailAction.do?nigStrainId=$id" end |
.otl ⇒ Object
2657 2658 2659 |
# File 'lib/biointerchange/life_science_registry.rb', line 2657 def self.otl "http://urgi.versailles.inra.fr/OryzaTagLine/cgi-bin/general_mutant.pl?line=$id" end |
.p3db ⇒ Object
2661 2662 2663 |
# File 'lib/biointerchange/life_science_registry.rb', line 2661 def self.p3db "http://digbio.missouri.edu/p3db/data/protein.php?id=$id" end |
.pairsdb ⇒ Object
2665 2666 2667 |
# File 'lib/biointerchange/life_science_registry.rb', line 2665 def self.pairsdb "http://pairsdb.csc.fi/?query=seqinfo&accnum=$id" end |
.paleodb ⇒ Object
733 734 735 |
# File 'lib/biointerchange/life_science_registry.rb', line 733 def self.paleodb "http://paleodb.geology.wisc.edu/cgi-bin/bridge.pl?a=basicTaxonInfo&taxon_no=$id" end |
.pali ⇒ Object
2669 2670 2671 |
# File 'lib/biointerchange/life_science_registry.rb', line 2669 def self.pali "http://pauling.mbu.iisc.ernet.in/~pali/cgi/members.cgi?famno=$id" end |
.pandit ⇒ Object
2673 2674 2675 |
# File 'lib/biointerchange/life_science_registry.rb', line 2673 def self.pandit "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=$id" end |
.panther ⇒ Object
225 226 227 |
# File 'lib/biointerchange/life_science_registry.rb', line 225 def self.panther "http://www.pantherdb.org/panther/family.do?clsAccession=$id" end |
.panther_family ⇒ Object
229 230 231 |
# File 'lib/biointerchange/life_science_registry.rb', line 229 def self.panther_family "http://www.pantherdb.org/panther/family.do?clsAccession=$id" end |
.panther_gene ⇒ Object
2677 2678 2679 |
# File 'lib/biointerchange/life_science_registry.rb', line 2677 def self.panther_gene "http://www.pantherdb.org/genes/gene.do?acc=$id" end |
.panther_ontology ⇒ Object
2681 2682 2683 |
# File 'lib/biointerchange/life_science_registry.rb', line 2681 def self.panther_ontology "http://www.pantherdb.org/panther/category.do?categoryAcc=$id" end |
.panther_pathway ⇒ Object
1133 1134 1135 |
# File 'lib/biointerchange/life_science_registry.rb', line 1133 def self.panther_pathway "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$id" end |
.partigenedb ⇒ Object
2685 2686 2687 |
# File 'lib/biointerchange/life_science_registry.rb', line 2685 def self.partigenedb "http://www.compsysbio.org/partigene/cluster.php?cluster=$id" end |
.pass2 ⇒ Object
2689 2690 2691 |
# File 'lib/biointerchange/life_science_registry.rb', line 2689 def self.pass2 "http://caps.ncbs.res.in/cgi-bin/mini/databases/campass/pass/pass.cgi?code=$id" end |
.pathfinder ⇒ Object
2693 2694 2695 |
# File 'lib/biointerchange/life_science_registry.rb', line 2693 def self.pathfinder "http://www.sigmaaldrich.com/life-science/your-favorite-gene-search/pathway-overviews/$id.html" end |
.pathguide ⇒ Object
2697 2698 2699 |
# File 'lib/biointerchange/life_science_registry.rb', line 2697 def self.pathguide "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$id" end |
.pathoplant ⇒ Object
2701 2702 2703 |
# File 'lib/biointerchange/life_science_registry.rb', line 2701 def self.pathoplant "http://www.pathoplant.de/detail.php?accNo=$id" end |
.pathwaycommons ⇒ Object
273 274 275 |
# File 'lib/biointerchange/life_science_registry.rb', line 273 def self.pathwaycommons "http://www.pathwaycommons.org/pc/record2.do?id=$id" end |
.pathwayontology ⇒ Object
2705 2706 2707 |
# File 'lib/biointerchange/life_science_registry.rb', line 2705 def self.pathwayontology "http://rgd.mcw.edu/tools/ontology/ont_annot.cgi?term_key=$id&ontology=go" end |
.pato ⇒ Object
401 402 403 |
# File 'lib/biointerchange/life_science_registry.rb', line 401 def self.pato "http://www.ebi.ac.uk/ontology-lookup/?termId=$id" end |
.patric ⇒ Object
2709 2710 2711 |
# File 'lib/biointerchange/life_science_registry.rb', line 2709 def self.patric "http://patricbrc.vbi.vt.edu/portal/portal/patric/Taxon?cType=taxon&cId=$id" end |
.pazar ⇒ Object
1057 1058 1059 |
# File 'lib/biointerchange/life_science_registry.rb', line 1057 def self.pazar "http://www.pazar.info/cgi-bin/tf_search.cgi?searchtab=tfs&ID_list=PAZAR_TF&geneID=$id" end |
.pdb ⇒ Object
85 86 87 |
# File 'lib/biointerchange/life_science_registry.rb', line 85 def self.pdb "http://www.rcsb.org/pdb/explore/explore.do?structureId=$id" end |
.pdb_tm ⇒ Object
2713 2714 2715 |
# File 'lib/biointerchange/life_science_registry.rb', line 2713 def self.pdb_tm "http://pdbtm.enzim.hu/?m=show_entry&id=$id" end |
.pdba ⇒ Object
2717 2718 2719 |
# File 'lib/biointerchange/life_science_registry.rb', line 2717 def self.pdba "http://www.rcsb.org/pdb/explore/explore.do?structureId=$id" end |
.pdbe ⇒ Object
1169 1170 1171 |
# File 'lib/biointerchange/life_science_registry.rb', line 1169 def self.pdbe "http://www.pdbe.org/$id" end |
.pdbj ⇒ Object
1189 1190 1191 |
# File 'lib/biointerchange/life_science_registry.rb', line 1189 def self.pdbj "http://service.pdbj.org/mine/Detail?PDBID=$id&PAGEID=Summary" end |
.pdbsum ⇒ Object
1193 1194 1195 |
# File 'lib/biointerchange/life_science_registry.rb', line 1193 def self.pdbsum "http://www.ebi.ac.uk/pdbsum/$id" end |
.pdtd ⇒ Object
2721 2722 2723 |
# File 'lib/biointerchange/life_science_registry.rb', line 2721 def self.pdtd "http://www.dddc.ac.cn/pdtd/detail.php?pdbId=$id" end |
.pedant ⇒ Object
2725 2726 2727 |
# File 'lib/biointerchange/life_science_registry.rb', line 2725 def self.pedant "http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=$id" end |
.pede ⇒ Object
2729 2730 2731 |
# File 'lib/biointerchange/life_science_registry.rb', line 2729 def self.pede "http://pede.dna.affrc.go.jp/seq_search/assembly_info.php?release=$id&name=$id" end |
.pepbank ⇒ Object
2733 2734 2735 |
# File 'lib/biointerchange/life_science_registry.rb', line 2733 def self.pepbank "http://pepbank.mgh.harvard.edu/interactions/details/$id" end |
.pepr ⇒ Object
2737 2738 2739 |
# File 'lib/biointerchange/life_science_registry.rb', line 2737 def self.pepr "http://pepr.cnmcresearch.org/browse.do?action=list_[?exp/?prj_exp]&[?exp/?project]Id=$id" end |
.peptideatlas ⇒ Object
201 202 203 |
# File 'lib/biointerchange/life_science_registry.rb', line 201 def self.peptideatlas "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/GetProtein?atlas_build_id=242&protein_name=$id&action=QUERY" end |
.peroxibase ⇒ Object
825 826 827 |
# File 'lib/biointerchange/life_science_registry.rb', line 825 def self.peroxibase "http://peroxibase.toulouse.inra.fr/listing.php?action=view&id=$id" end |
.pfam ⇒ Object
109 110 111 |
# File 'lib/biointerchange/life_science_registry.rb', line 109 def self.pfam "http://pfam.sanger.ac.uk/family?entry=$id" end |
.pgdb ⇒ Object
2741 2742 2743 |
# File 'lib/biointerchange/life_science_registry.rb', line 2741 def self.pgdb "http://www.urogene.org/pgdb/gene/$id.html" end |
.pgn ⇒ Object
1013 1014 1015 |
# File 'lib/biointerchange/life_science_registry.rb', line 1013 def self.pgn "http://pgn.cornell.edu/search/unigene_search_result.pl?unigene_id=$id" end |
.pharmgkb ⇒ Object
2745 2746 2747 |
# File 'lib/biointerchange/life_science_registry.rb', line 2745 def self.pharmgkb "http://www.pharmgkb.org/do/serve?objId=$id" end |
.pharmgkb_disease ⇒ Object
341 342 343 |
# File 'lib/biointerchange/life_science_registry.rb', line 341 def self.pharmgkb_disease "http://www.pharmgkb.org/disease/$id" end |
.pharmgkb_drug ⇒ Object
345 346 347 |
# File 'lib/biointerchange/life_science_registry.rb', line 345 def self.pharmgkb_drug "http://www.pharmgkb.org/drug/$id" end |
.pharmgkb_gene ⇒ Object
905 906 907 |
# File 'lib/biointerchange/life_science_registry.rb', line 905 def self.pharmgkb_gene "http://www.pharmgkb.org/gene/$id" end |
.pharmgkb_pathways ⇒ Object
337 338 339 |
# File 'lib/biointerchange/life_science_registry.rb', line 337 def self.pharmgkb_pathways "http://www.pharmgkb.org/pathway/$id" end |
.phci2dpage ⇒ Object
2749 2750 2751 |
# File 'lib/biointerchange/life_science_registry.rb', line 2749 def self.phci2dpage "http://www.gram.au.dk/cgi-bin/get-2d-entry/def?$id" end |
.phosphosite_protein ⇒ Object
393 394 395 |
# File 'lib/biointerchange/life_science_registry.rb', line 393 def self.phosphosite_protein "http://www.phosphosite.org/proteinAction.do?id=$id" end |
.phosphosite_residue ⇒ Object
449 450 451 |
# File 'lib/biointerchange/life_science_registry.rb', line 449 def self.phosphosite_residue "http://www.phosphosite.org/siteAction.do?id=$id" end |
.pibase ⇒ Object
2753 2754 2755 |
# File 'lib/biointerchange/life_science_registry.rb', line 2753 def self.pibase "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$id" end |
.pid ⇒ Object
481 482 483 |
# File 'lib/biointerchange/life_science_registry.rb', line 481 def self.pid "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$id" end |
.pig ⇒ Object
2757 2758 2759 |
# File 'lib/biointerchange/life_science_registry.rb', line 2757 def self.pig "http://molvis.vbi.vt.edu/pig/view/pig_protein_view.php?protein=$id" end |
.piggis ⇒ Object
2761 2762 2763 |
# File 'lib/biointerchange/life_science_registry.rb', line 2761 def self.piggis "http://pig.genomics.org.cn/transview.jsp?transcript=$id" end |
.pigqtldb ⇒ Object
2765 2766 2767 |
# File 'lib/biointerchange/life_science_registry.rb', line 2765 def self.pigqtldb "http://www.animalgenome.org/cgi-bin/QTLdb/SS/qdetails?QTL_ID=$id" end |
.pips ⇒ Object
2769 2770 2771 |
# File 'lib/biointerchange/life_science_registry.rb', line 2769 def self.pips "http://www.compbio.dundee.ac.uk/www-pips/Identifier.jsp?ID=$id&Interactions=Prot&LR=1.0&modules=on" end |
.pirsf ⇒ Object
73 74 75 |
# File 'lib/biointerchange/life_science_registry.rb', line 73 def self.pirsf "http://pir.georgetown.edu/cgi-bin/ipcSF?id=$id" end |
.pisite ⇒ Object
2773 2774 2775 |
# File 'lib/biointerchange/life_science_registry.rb', line 2773 def self.pisite "http://pisite.hgc.jp/cgi-bin/view.cgi?pdbid=$id&chain=[?chain]" end |
.plantcyc ⇒ Object
2777 2778 2779 |
# File 'lib/biointerchange/life_science_registry.rb', line 2777 def self.plantcyc "http://pmn.plantcyc.org/PLANT/NEW-IMAGE?type=GENE&object=$id" end |
.plantsp_plantst ⇒ Object
2781 2782 2783 |
# File 'lib/biointerchange/life_science_registry.rb', line 2781 def self.plantsp_plantst "http://plantst.genomics.purdue.edu/cgi-bin/detail.cgi?db=plants[?t/?p]&id=$id" end |
.planttfdb ⇒ Object
2785 2786 2787 |
# File 'lib/biointerchange/life_science_registry.rb', line 2785 def self.planttfdb "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=[?species_name]&did=$id" end |
.planttribes ⇒ Object
2789 2790 2791 |
# File 'lib/biointerchange/life_science_registry.rb', line 2789 def self.planttribes "http://fgp.huck.psu.edu/tribedb/gene.pl?action=view_gene&gene_id=$id" end |
.plasmid ⇒ Object
2793 2794 2795 |
# File 'lib/biointerchange/life_science_registry.rb', line 2793 def self.plasmid "http://plasmid.med.harvard.edu/PLASMID/GetCollection.do?collectionName=$id" end |
.plasmodb ⇒ Object
549 550 551 |
# File 'lib/biointerchange/life_science_registry.rb', line 549 def self.plasmodb "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id&project_id=PlasmoDB" end |
.plpmdb ⇒ Object
2797 2798 2799 |
# File 'lib/biointerchange/life_science_registry.rb', line 2797 def self.plpmdb "http://www.studiofmp.com/plpmdb/mutant.asp?Id=$id" end |
.plprot ⇒ Object
2801 2802 2803 |
# File 'lib/biointerchange/life_science_registry.rb', line 2801 def self.plprot "http://www.plprot.ethz.ch/index.php?page=ProteinDetails&plp_id=$id&organism=[?species_name]" end |
.pmap_cutdb ⇒ Object
833 834 835 |
# File 'lib/biointerchange/life_science_registry.rb', line 833 def self.pmap_cutdb "http://www.proteolysis.org/proteases/m_summarypg/$id" end |
.pmap_substratedb ⇒ Object
829 830 831 |
# File 'lib/biointerchange/life_science_registry.rb', line 829 def self.pmap_substratedb "http://substrate.burnham.org/protein/annotation/$id/html" end |
.pmc ⇒ Object
537 538 539 |
# File 'lib/biointerchange/life_science_registry.rb', line 537 def self.pmc "http://www.ncbi.nlm.nih.gov/pmc/articles/$id/?tool=pmcentrez" end |
.pmd ⇒ Object
2805 2806 2807 |
# File 'lib/biointerchange/life_science_registry.rb', line 2805 def self.pmd "http://spock.genes.nig.ac.jp/~pmd/cgi-bin/PMD/PMDentry.pl.cgi?$id" end |
.pmdb ⇒ Object
705 706 707 |
# File 'lib/biointerchange/life_science_registry.rb', line 705 def self.pmdb "http://mi.caspur.it/PMDB/user/search.php?idsearch=$id" end |
.pmp ⇒ Object
841 842 843 |
# File 'lib/biointerchange/life_science_registry.rb', line 841 def self.pmp "http://www.proteinmodelportal.org/query/uniprot/$id" end |
.po ⇒ Object
1061 1062 1063 |
# File 'lib/biointerchange/life_science_registry.rb', line 1061 def self.po "http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=$id" end |
.pod ⇒ Object
2809 2810 2811 |
# File 'lib/biointerchange/life_science_registry.rb', line 2809 def self.pod "http://podb.nibb.ac.jp/Organellome/bin/browseImage.php?ID=Image-toshi_biochem.tohoku.ac.jp-$id" end |
.pogs_plantrbp ⇒ Object
2813 2814 2815 |
# File 'lib/biointerchange/life_science_registry.rb', line 2813 def self.pogs_plantrbp "http://plantrbp.uoregon.edu/pogView.php?id=$id" end |
.polya_db ⇒ Object
2817 2818 2819 |
# File 'lib/biointerchange/life_science_registry.rb', line 2817 def self.polya_db "http://polya.umdnj.edu/polya_db2/gene.php?llid=$id" end |
.polydoms ⇒ Object
2821 2822 2823 |
# File 'lib/biointerchange/life_science_registry.rb', line 2821 def self.polydoms "http://polydoms.cchmc.org/polydoms/GD?DISP_OPTION=[?NonSynonymous/Synonymous]&field1=$id" end |
.polymorphix ⇒ Object
2825 2826 2827 |
# File 'lib/biointerchange/life_science_registry.rb', line 2825 def self.polymorphix "http://pbil.univ-lyon1.fr/cgi-bin/acnuc-dispfam?query=$id&db=Polymorphix" end |
.poxvirus_gene ⇒ Object
2829 2830 2831 |
# File 'lib/biointerchange/life_science_registry.rb', line 2829 def self.poxvirus_gene "http://www.poxvirus.org/gene_detail.asp?gene_id=$id" end |
.poxvirus_genome ⇒ Object
2833 2834 2835 |
# File 'lib/biointerchange/life_science_registry.rb', line 2833 def self.poxvirus_genome "http://www.poxvirus.org/map.asp?genome_id=$id" end |
.pr ⇒ Object
513 514 515 |
# File 'lib/biointerchange/life_science_registry.rb', line 513 def self.pr "http://pir.georgetown.edu/cgi-bin/pro/entry_pro?id=$id" end |
.precise ⇒ Object
2837 2838 2839 |
# File 'lib/biointerchange/life_science_registry.rb', line 2837 def self.precise "http://precise.bu.edu/Output.aspx?UniqueID=$id" end |
.premod ⇒ Object
2841 2842 2843 |
# File 'lib/biointerchange/life_science_registry.rb', line 2841 def self.premod "http://genomequebec.mcgill.ca/PReMod/show/module.do?method=showModule&moduleId=$id" end |
.priam ⇒ Object
2845 2846 2847 |
# File 'lib/biointerchange/life_science_registry.rb', line 2845 def self.priam "http://prodomweb.univ-lyon1.fr/priam/cgi-bin/ReqPRIAM_png.pl?priam_release=OCT11&priam_ac=$id" end |
.pride ⇒ Object
249 250 251 |
# File 'lib/biointerchange/life_science_registry.rb', line 249 def self.pride "http://www.ebi.ac.uk/pride/experimentLink.do?experimentAccessionNumber=$id" end |
.prime ⇒ Object
2849 2850 2851 |
# File 'lib/biointerchange/life_science_registry.rb', line 2849 def self.prime "http://prime.ontology.ims.u-tokyo.ac.jp:8081/php/DbDispProtein.php?proteinID=$id" end |
.prints ⇒ Object
2853 2854 2855 |
# File 'lib/biointerchange/life_science_registry.rb', line 2853 def self.prints "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/PRINTS/DoPRINTS.pl?cmd_a=Display&qua_a=/Full&fun_a=Code&qst_a=$id" end |
.procognate ⇒ Object
2857 2858 2859 |
# File 'lib/biointerchange/life_science_registry.rb', line 2857 def self.procognate "http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/procognate/PDBquery.pl?PDBcode=$id&Classification=[?CATH/?SCOP/?Pfam]" end |
.prodom ⇒ Object
421 422 423 |
# File 'lib/biointerchange/life_science_registry.rb', line 421 def self.prodom "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$id" end |
.prodoric_bindingsite ⇒ Object
2861 2862 2863 |
# File 'lib/biointerchange/life_science_registry.rb', line 2861 def self.prodoric_bindingsite "http://prodoric.tu-bs.de/site.php?site_acc=$id" end |
.prodoric_expression ⇒ Object
2865 2866 2867 |
# File 'lib/biointerchange/life_science_registry.rb', line 2865 def self.prodoric_expression "http://prodoric.tu-bs.de/profile.php?profile_acc=$id" end |
.prodoric_gene ⇒ Object
2869 2870 2871 |
# File 'lib/biointerchange/life_science_registry.rb', line 2869 def self.prodoric_gene "http://prodoric.tu-bs.de/gene.php?gene_acc=$id" end |
.prodoric_protein ⇒ Object
2873 2874 2875 |
# File 'lib/biointerchange/life_science_registry.rb', line 2873 def self.prodoric_protein "http://prodoric.tu-bs.de/protein.php?protein_acc=$id" end |
.promex ⇒ Object
2877 2878 2879 |
# File 'lib/biointerchange/life_science_registry.rb', line 2877 def self.promex "http://promex.pph.univie.ac.at/promex/?spec=$id" end |
.promise ⇒ Object
2881 2882 2883 |
# File 'lib/biointerchange/life_science_registry.rb', line 2881 def self.promise "http://metallo.scripps.edu/PROMISE/$id.html" end |
.pronit ⇒ Object
2885 2886 2887 |
# File 'lib/biointerchange/life_science_registry.rb', line 2885 def self.pronit "http://gibk26.bse.kyutech.ac.jp/cgi-bin/jouhou/pronit/new/bind_entry.pl?ENTRY=$id" end |
.prorule ⇒ Object
2889 2890 2891 |
# File 'lib/biointerchange/life_science_registry.rb', line 2889 def self.prorule "http://www.expasy.org/cgi-bin/prosite/ScanView.cgi?scanfile=$id" end |
.prosite ⇒ Object
121 122 123 |
# File 'lib/biointerchange/life_science_registry.rb', line 121 def self.prosite "http://www.expasy.org/cgi-bin/nicesite.pl?$id" end |
.protclustdb ⇒ Object
837 838 839 |
# File 'lib/biointerchange/life_science_registry.rb', line 837 def self.protclustdb "http://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=ShowDetailView&TermToSearch=$id" end |
.protcom ⇒ Object
2893 2894 2895 |
# File 'lib/biointerchange/life_science_registry.rb', line 2893 def self.protcom "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=$id" end |
.protherm ⇒ Object
2897 2898 2899 |
# File 'lib/biointerchange/life_science_registry.rb', line 2897 def self.protherm "http://gibk26.bse.kyutech.ac.jp/cgi-bin/jouhou/protherm/pp_entry.pl?ENTRY=$id" end |
.protonet_cluster ⇒ Object
849 850 851 |
# File 'lib/biointerchange/life_science_registry.rb', line 849 def self.protonet_cluster "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$id" end |
.protonet_proteincard ⇒ Object
845 846 847 |
# File 'lib/biointerchange/life_science_registry.rb', line 845 def self.protonet_proteincard "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$id" end |
.psd ⇒ Object
2901 2902 2903 |
# File 'lib/biointerchange/life_science_registry.rb', line 2901 def self.psd "http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/get-sno-sequence-and-allignments?id=$id" end |
.pseudobase ⇒ Object
2905 2906 2907 |
# File 'lib/biointerchange/life_science_registry.rb', line 2905 def self.pseudobase "http://www.ekevanbatenburg.nl/PKBASE/$id.HTML" end |
.pseudocap ⇒ Object
2909 2910 2911 |
# File 'lib/biointerchange/life_science_registry.rb', line 2909 def self.pseudocap "http://www.pseudomonas.com/getAnnotation.do?locusID=$id" end |
.pseudogene ⇒ Object
2913 2914 2915 |
# File 'lib/biointerchange/life_science_registry.rb', line 2913 def self.pseudogene "http://tables.pseudogene.org/[?species_name]/$id" end |
.pseudomonas ⇒ Object
665 666 667 |
# File 'lib/biointerchange/life_science_registry.rb', line 665 def self.pseudomonas "http://www.pseudomonas.com/getAnnotation.do?locusID=$id" end |
.pstiing ⇒ Object
2917 2918 2919 |
# File 'lib/biointerchange/life_science_registry.rb', line 2917 def self.pstiing "http://pstiing.licr.org/search/c_proteininfo.jsp?uniprot_id=$id" end |
.ptmswitchboard ⇒ Object
2921 2922 2923 |
# File 'lib/biointerchange/life_science_registry.rb', line 2921 def self.ptmswitchboard "http://cagr.pcbi.upenn.edu/PTMswitchboard/jsp/detail.jsp?ID=$id" end |
.pubchem_bioassay ⇒ Object
269 270 271 |
# File 'lib/biointerchange/life_science_registry.rb', line 269 def self.pubchem_bioassay "http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=$id" end |
.pubchem_compound ⇒ Object
129 130 131 |
# File 'lib/biointerchange/life_science_registry.rb', line 129 def self.pubchem_compound "http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?db=pccompound&term=$id" end |
.pubchem_substance ⇒ Object
125 126 127 |
# File 'lib/biointerchange/life_science_registry.rb', line 125 def self.pubchem_substance "http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pcsubstance&term=$id" end |
.pubmed ⇒ Object
65 66 67 |
# File 'lib/biointerchange/life_science_registry.rb', line 65 def self.pubmed "http://www.ncbi.nlm.nih.gov/pubmed/$id" end |
.pubmeth ⇒ Object
2925 2926 2927 |
# File 'lib/biointerchange/life_science_registry.rb', line 2925 def self.pubmeth "http://matrix.ugent.be/temp/static/$id.html" end |
.pw ⇒ Object
897 898 899 |
# File 'lib/biointerchange/life_science_registry.rb', line 897 def self.pw "http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=$id" end |
.qppd ⇒ Object
2929 2930 2931 |
# File 'lib/biointerchange/life_science_registry.rb', line 2929 def self.qppd "http://lpgws.nci.nih.gov/cgi-bin/PrimerViewer?acc=$id" end |
.rad ⇒ Object
2933 2934 2935 |
# File 'lib/biointerchange/life_science_registry.rb', line 2933 def self.rad "http://rad.dna.affrc.go.jp/SY-1102-cgi-bin/rad/PCA/ctl_frame.cgi?clone=$id" end |
.rapdb ⇒ Object
2937 2938 2939 |
# File 'lib/biointerchange/life_science_registry.rb', line 2937 def self.rapdb "http://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/build5?name=[$id" end |
.rapid ⇒ Object
2941 2942 2943 |
# File 'lib/biointerchange/life_science_registry.rb', line 2941 def self.rapid "http://rapid.rcai.riken.jp/RAPID/diseasePhenotype?pid_id=$id" end |
.rarge ⇒ Object
2945 2946 2947 |
# File 'lib/biointerchange/life_science_registry.rb', line 2945 def self.rarge "http://rarge.psc.riken.jp/dsmutant/detail.pl?keyword=$id" end |
.ratmap ⇒ Object
2949 2950 2951 |
# File 'lib/biointerchange/life_science_registry.rb', line 2949 def self.ratmap "http://ratmap.org/Showgene.php?gene_stable_id=$id" end |
.rcd ⇒ Object
2953 2954 2955 |
# File 'lib/biointerchange/life_science_registry.rb', line 2953 def self.rcd "http://purl.bioontology.org/ontology/RCD/$id" end |
.reactome ⇒ Object
77 78 79 |
# File 'lib/biointerchange/life_science_registry.rb', line 77 def self.reactome "http://www.reactome.org/cgi-bin/eventbrowser_st_id?FROM_REACTOME=1&ST_ID=$id" end |
.rebase ⇒ Object
853 854 855 |
# File 'lib/biointerchange/life_science_registry.rb', line 853 def self.rebase "http://rebase.neb.com/rebase/enz/$id.html" end |
.recode ⇒ Object
2957 2958 2959 |
# File 'lib/biointerchange/life_science_registry.rb', line 2957 def self.recode "http://recode.ucc.ie/recode/$id/" end |
.redfly ⇒ Object
2961 2962 2963 |
# File 'lib/biointerchange/life_science_registry.rb', line 2961 def self.redfly "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$id" end |
.redidb ⇒ Object
2965 2966 2967 |
# File 'lib/biointerchange/life_science_registry.rb', line 2965 def self.redidb "http://biologia.unical.it/py_script/cgi-bin/retrieve.py?query=$id" end |
.regtransbase ⇒ Object
2969 2970 2971 |
# File 'lib/biointerchange/life_science_registry.rb', line 2969 def self.regtransbase "http://regtransbase.lbl.gov/cgi-bin/regtransbase?page=geneinfo&seqfeature_id=$id" end |
.regulondb ⇒ Object
2973 2974 2975 |
# File 'lib/biointerchange/life_science_registry.rb', line 2973 def self.regulondb "http://regulondb.ccg.unam.mx/GeneController?key_id_org=ECK12&gene_id=$id&type=jsp" end |
.replicationdomain ⇒ Object
2977 2978 2979 |
# File 'lib/biointerchange/life_science_registry.rb', line 2977 def self.replicationdomain "http://www.replicationdomain.com/view-dataset.php?RecordID=$id" end |
.repo ⇒ Object
2981 2982 2983 |
# File 'lib/biointerchange/life_science_registry.rb', line 2981 def self.repo "http://purl.bioontology.org/ontology/REPO.owl#$id" end |
.reproduction2dpage ⇒ Object
2985 2986 2987 |
# File 'lib/biointerchange/life_science_registry.rb', line 2985 def self.reproduction2dpage "http://reprod.njmu.edu.cn/cgi-bin/2d/2d.cgi?ac=$id" end |
.resid ⇒ Object
173 174 175 |
# File 'lib/biointerchange/life_science_registry.rb', line 173 def self.resid "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-id+6JSUg1NA6u4+-e+[RESID:'$id']" end |
.rfam ⇒ Object
2989 2990 2991 |
# File 'lib/biointerchange/life_science_registry.rb', line 2989 def self.rfam "http://rfam.sanger.ac.uk/family/$id" end |
.rgap ⇒ Object
1129 1130 1131 |
# File 'lib/biointerchange/life_science_registry.rb', line 1129 def self.rgap "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=$id" end |
.rgd ⇒ Object
177 178 179 |
# File 'lib/biointerchange/life_science_registry.rb', line 177 def self.rgd "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$id" end |
.rgd_gene ⇒ Object
2993 2994 2995 |
# File 'lib/biointerchange/life_science_registry.rb', line 2993 def self.rgd_gene "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$id" end |
.rgd_qtl ⇒ Object
2997 2998 2999 |
# File 'lib/biointerchange/life_science_registry.rb', line 2997 def self.rgd_qtl "http://rgd.mcw.edu/objectSearch/qtlReport.jsp?rgd_id=$id" end |
.rgd_ref ⇒ Object
3001 3002 3003 |
# File 'lib/biointerchange/life_science_registry.rb', line 3001 def self.rgd_ref "http://rgd.mcw.edu/tools/references/references_view.cgi?id=$id" end |
.rgd_strain ⇒ Object
3005 3006 3007 |
# File 'lib/biointerchange/life_science_registry.rb', line 3005 def self.rgd_strain "http://rgd.mcw.edu/tools/strains/strains_view.cgi?id=$id" end |
.rh_mesh ⇒ Object
3009 3010 3011 |
# File 'lib/biointerchange/life_science_registry.rb', line 3009 def self.rh_mesh "http://bioonto.de/mesh.owl#$id" end |
.rhea ⇒ Object
309 310 311 |
# File 'lib/biointerchange/life_science_registry.rb', line 309 def self.rhea "http://www.ebi.ac.uk/rhea//reaction.xhtml?id=$id" end |
.rice_pipeline ⇒ Object
3013 3014 3015 |
# File 'lib/biointerchange/life_science_registry.rb', line 3013 def self.rice_pipeline "http://cdna01.dna.affrc.go.jp/cDNA/report/$id.html" end |
.ricecyc ⇒ Object
3017 3018 3019 |
# File 'lib/biointerchange/life_science_registry.rb', line 3017 def self.ricecyc "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=$id" end |
.rissc ⇒ Object
3021 3022 3023 |
# File 'lib/biointerchange/life_science_registry.rb', line 3021 def self.rissc "http://egg.umh.es/rissc/fich.php?accession=$id" end |
.rkd ⇒ Object
3025 3026 3027 |
# File 'lib/biointerchange/life_science_registry.rb', line 3025 def self.rkd "http://phylomics.ucdavis.edu/kinase/tree.php?fam=$id" end |
.rmd ⇒ Object
3029 3030 3031 |
# File 'lib/biointerchange/life_science_registry.rb', line 3029 def self.rmd "http://ribosome.fandm.edu/node/$id" end |
.rna_sstrand ⇒ Object
3033 3034 3035 |
# File 'lib/biointerchange/life_science_registry.rb', line 3033 def self.rna_sstrand "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$id" end |
.rnajunction ⇒ Object
3037 3038 3039 |
# File 'lib/biointerchange/life_science_registry.rb', line 3037 def self.rnajunction "http://rnajunction.abcc.ncifcrf.gov/JunctionPage.php?jid=$id" end |
.rnamods ⇒ Object
1065 1066 1067 |
# File 'lib/biointerchange/life_science_registry.rb', line 1065 def self.rnamods "http://s59.cas.albany.edu/RNAmods/cgi-bin/rnashow.cgi?$id" end |
.rnao ⇒ Object
3041 3042 3043 |
# File 'lib/biointerchange/life_science_registry.rb', line 3041 def self.rnao "http://purl.obolibrary.org/obo/$id" end |
.rnrdb ⇒ Object
3045 3046 3047 |
# File 'lib/biointerchange/life_science_registry.rb', line 3045 def self.rnrdb "http://rnrdb.molbio.su.se/proteins_for_organism.html?organism_nr=$id" end |
.roleo ⇒ Object
3049 3050 3051 |
# File 'lib/biointerchange/life_science_registry.rb', line 3049 def self.roleo "http://purl.obolibrary.org/obo/$id" end |
.rospath_pc ⇒ Object
3053 3054 3055 |
# File 'lib/biointerchange/life_science_registry.rb', line 3053 def self.rospath_pc "http://rospath.ewha.ac.kr/complex/ProteinComplexDetailFrm.jsp?ENTITY_ID=$id" end |
.rospath_protein ⇒ Object
3057 3058 3059 |
# File 'lib/biointerchange/life_science_registry.rb', line 3057 def self.rospath_protein "http://rospath.ewha.ac.kr/protein/ProteinDetailFrm.jsp?ENTITY_ID=$id" end |
.rospath_signalling ⇒ Object
3061 3062 3063 |
# File 'lib/biointerchange/life_science_registry.rb', line 3061 def self.rospath_signalling "http://rospath.ewha.ac.kr/signaling/SignalingDetailFrm.jsp?SIGNALING_ID=$id" end |
.rospath_transition ⇒ Object
3065 3066 3067 |
# File 'lib/biointerchange/life_science_registry.rb', line 3065 def self.rospath_transition "http://rospath.ewha.ac.kr/interaction/ProteinTransitionDetailFrm.jsp?ENTITY_ID=$id" end |
.rouge ⇒ Object
1021 1022 1023 |
# File 'lib/biointerchange/life_science_registry.rb', line 1021 def self.rouge "http://www.kazusa.or.jp/rouge/gfpage/$id/" end |
.rpg ⇒ Object
3069 3070 3071 |
# File 'lib/biointerchange/life_science_registry.rb', line 3069 def self.rpg "http://ribosome.miyazaki-med.ac.jp/rpg.cgi?mode=gene&id=$id" end |
.rs ⇒ Object
3073 3074 3075 |
# File 'lib/biointerchange/life_science_registry.rb', line 3073 def self.rs "http://purl.obolibrary.org/obo/$id" end |
.rtcgd ⇒ Object
3077 3078 3079 |
# File 'lib/biointerchange/life_science_registry.rb', line 3077 def self.rtcgd "http://rtcgd.abcc.ncifcrf.gov/cgi-bin/mm9/clone_finder.cgi?query=$id" end |
.rtprimerdb ⇒ Object
3081 3082 3083 |
# File 'lib/biointerchange/life_science_registry.rb', line 3081 def self.rtprimerdb "http://medgen.ugent.be/rtprimerdb/assay_report.php?assay_id=$id" end |
.rvd ⇒ Object
3085 3086 3087 |
# File 'lib/biointerchange/life_science_registry.rb', line 3085 def self.rvd "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=$id" end |
.s_mart_db ⇒ Object
3089 3090 3091 |
# File 'lib/biointerchange/life_science_registry.rb', line 3089 def self.s_mart_db "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$id" end |
.sabiork_ec ⇒ Object
465 466 467 |
# File 'lib/biointerchange/life_science_registry.rb', line 465 def self.sabiork_ec "http://sabiork.h-its.org/index2.jsp?EC=$id" end |
.sabiork_kinetic ⇒ Object
325 326 327 |
# File 'lib/biointerchange/life_science_registry.rb', line 325 def self.sabiork_kinetic "http://sabiork.h-its.org/kineticLawEntry.jsp?kinlawid=$id" end |
.sabiork_reaction ⇒ Object
145 146 147 |
# File 'lib/biointerchange/life_science_registry.rb', line 145 def self.sabiork_reaction "http://sabiork.h-its.org/index2.jsp?reac=$id" end |
.salad ⇒ Object
3093 3094 3095 |
# File 'lib/biointerchange/life_science_registry.rb', line 3093 def self.salad "http://salad.dna.affrc.go.jp/CGViewer/en/v3.0/cgv_clust_view.jsp?pfamid=$id" end |
.sbase ⇒ Object
3097 3098 3099 |
# File 'lib/biointerchange/life_science_registry.rb', line 3097 def self.sbase "http://hydra.icgeb.trieste.it/sbase/sbase.php?sec=search&sub=group&group_id=$id" end |
.sbo ⇒ Object
97 98 99 |
# File 'lib/biointerchange/life_science_registry.rb', line 97 def self.sbo "http://www.ebi.ac.uk/sbo/main/$id" end |
.scadb ⇒ Object
3101 3102 3103 |
# File 'lib/biointerchange/life_science_registry.rb', line 3101 def self.scadb "http://ymbc.ym.edu.tw/cgi-bin/SCAdb_ensembl/aroundSTR.cgi?sca_type=SCA1&type=CAG&repeats_id=$id" end |
.schistodb ⇒ Object
3105 3106 3107 |
# File 'lib/biointerchange/life_science_registry.rb', line 3105 def self.schistodb "http://schistocyc.schistodb.net/ptools/SM/NEW-IMAGE?type=GENE&object=$id" end |
.scmd ⇒ Object
3109 3110 3111 |
# File 'lib/biointerchange/life_science_registry.rb', line 3109 def self.scmd "http://yeast.gi.k.u-tokyo.ac.jp/datamine/ViewStats.do?orf=$id" end |
.scpd ⇒ Object
3113 3114 3115 |
# File 'lib/biointerchange/life_science_registry.rb', line 3113 def self.scpd "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?$id" end |
.scretf ⇒ Object
901 902 903 |
# File 'lib/biointerchange/life_science_registry.rb', line 901 def self.scretf "http://stormo.wustl.edu/ScerTF/details/$id/" end |
.sdap ⇒ Object
3117 3118 3119 |
# File 'lib/biointerchange/life_science_registry.rb', line 3117 def self.sdap "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$id" end |
.sdr ⇒ Object
3121 3122 3123 |
# File 'lib/biointerchange/life_science_registry.rb', line 3121 def self.sdr "http://paradox.harvard.edu/sdr/families/$id/$id_main.html" end |
.seedgenes ⇒ Object
3125 3126 3127 |
# File 'lib/biointerchange/life_science_registry.rb', line 3125 def self.seedgenes "http://www.seedgenes.org/SeedGeneProfile?geneSymbol=$id" end |
.selenodb ⇒ Object
3129 3130 3131 |
# File 'lib/biointerchange/life_science_registry.rb', line 3129 def self.selenodb "http://www.selenodb.org/cgi-perl/feature_report.pl?feature=$id_1.0" end |
.sgd ⇒ Object
93 94 95 |
# File 'lib/biointerchange/life_science_registry.rb', line 93 def self.sgd "http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=$id" end |
.sgd_pathways ⇒ Object
213 214 215 |
# File 'lib/biointerchange/life_science_registry.rb', line 213 def self.sgd_pathways "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$id" end |
.sgn ⇒ Object
685 686 687 |
# File 'lib/biointerchange/life_science_registry.rb', line 685 def self.sgn "http://solgenomics.net/phenome/locus_display.pl?locus_id=$id" end |
.sheepqtldb ⇒ Object
3133 3134 3135 |
# File 'lib/biointerchange/life_science_registry.rb', line 3133 def self.sheepqtldb "http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=$id" end |
.shibase ⇒ Object
3137 3138 3139 |
# File 'lib/biointerchange/life_science_registry.rb', line 3137 def self.shibase "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$id" end |
.shr ⇒ Object
3141 3142 3143 |
# File 'lib/biointerchange/life_science_registry.rb', line 3141 def self.shr "http://www.shojaee.com/shr/shr.owl#$id" end |
.siege ⇒ Object
3145 3146 3147 |
# File 'lib/biointerchange/life_science_registry.rb', line 3145 def self.siege "http://pulm.bumc.bu.edu/cgi-bin/siegeDB/siege_html/compsearchgraph.cgi?$id" end |
.siena2dpage ⇒ Object
3149 3150 3151 |
# File 'lib/biointerchange/life_science_registry.rb', line 3149 def self.siena2dpage "http://www.bio-mol.unisi.it/cgi-bin/2d/2d.cgi?ac=$id" end |
.signaling_gateway ⇒ Object
169 170 171 |
# File 'lib/biointerchange/life_science_registry.rb', line 169 def self.signaling_gateway "http://www.signaling-gateway.org/molecule/query?afcsid=$id" end |
.silkdb ⇒ Object
3153 3154 3155 |
# File 'lib/biointerchange/life_science_registry.rb', line 3153 def self.silkdb "http://www.silkdb.org/cgi-bin/gbrowse/silkdb/?name=$id" end |
.silva ⇒ Object
3157 3158 3159 |
# File 'lib/biointerchange/life_science_registry.rb', line 3157 def self.silva "http://www.arb-silva.de/browser/ssu/$id/embl/?tx_pmtree_pi1[pid]=$id" end |
.sisyphus ⇒ Object
3161 3162 3163 |
# File 'lib/biointerchange/life_science_registry.rb', line 3161 def self.sisyphus "http://sisyphus.mrc-cpe.cam.ac.uk/sisyphus/alignment.jsp?ac=$id" end |
.sitex ⇒ Object
933 934 935 |
# File 'lib/biointerchange/life_science_registry.rb', line 933 def self.sitex "http://www-bionet.sscc.ru/sitex/index.php?siteid=$id" end |
.smart ⇒ Object
425 426 427 |
# File 'lib/biointerchange/life_science_registry.rb', line 425 def self.smart "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$id" end |
.smpdb ⇒ Object
389 390 391 |
# File 'lib/biointerchange/life_science_registry.rb', line 389 def self.smpdb "http://pathman.smpdb.ca/pathways/$id/pathway" end |
.smr ⇒ Object
3165 3166 3167 |
# File 'lib/biointerchange/life_science_registry.rb', line 3165 def self.smr "http://swissmodel.expasy.org/repository/?pid=$id&uid=&token=&zid=async" end |
.snap ⇒ Object
3169 3170 3171 |
# File 'lib/biointerchange/life_science_registry.rb', line 3169 def self.snap "http://snap.humgen.au.dk/views/geneview.cgi?gene=$id" end |
.snornalbmedb ⇒ Object
3173 3174 3175 |
# File 'lib/biointerchange/life_science_registry.rb', line 3173 def self.snornalbmedb "http://www-snorna.biotoul.fr/plus.php?id=$id" end |
.snp2nmd ⇒ Object
3177 3178 3179 |
# File 'lib/biointerchange/life_science_registry.rb', line 3177 def self.snp2nmd "http://variome.kobic.re.kr/SNP2NMD/snp2nmd.jsp?id=$id&rule=50" end |
.snp500cancer ⇒ Object
3181 3182 3183 |
# File 'lib/biointerchange/life_science_registry.rb', line 3181 def self.snp500cancer "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$id" end |
.snpeffect ⇒ Object
3185 3186 3187 |
# File 'lib/biointerchange/life_science_registry.rb', line 3185 def self.snpeffect "http://snpeffect.vib.be/snp_main.php?id=$id" end |
.so ⇒ Object
305 306 307 |
# File 'lib/biointerchange/life_science_registry.rb', line 305 def self.so "http://www.sequenceontology.org/miso/current_release/term/$id" end |
.soy ⇒ Object
3189 3190 3191 |
# File 'lib/biointerchange/life_science_registry.rb', line 3189 def self.soy "http://purl.obolibrary.org/obo/$id" end |
.spbase ⇒ Object
3193 3194 3195 |
# File 'lib/biointerchange/life_science_registry.rb', line 3193 def self.spbase "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=$id" end |
.spd ⇒ Object
3197 3198 3199 |
# File 'lib/biointerchange/life_science_registry.rb', line 3197 def self.spd "http://spd.cbi.pku.edu.cn/spd_pro.php?id=$id" end |
.spdo ⇒ Object
3201 3202 3203 |
# File 'lib/biointerchange/life_science_registry.rb', line 3201 def self.spdo "http://purl.obolibrary.org/obo/$id" end |
.spliceinfo ⇒ Object
3205 3206 3207 |
# File 'lib/biointerchange/life_science_registry.rb', line 3205 def self.spliceinfo "http://spliceinfo.mbc.nctu.edu.tw/info_show.php?gs_id=$id" end |
.splicenest ⇒ Object
3209 3210 3211 |
# File 'lib/biointerchange/life_science_registry.rb', line 3209 def self.splicenest "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$id" end |
.spodobase ⇒ Object
3213 3214 3215 |
# File 'lib/biointerchange/life_science_registry.rb', line 3213 def self.spodobase "http://bioweb.ensam.inra.fr/Spodopterav3/sequence?name=$id&class=Sequence" end |
.sprint ⇒ Object
233 234 235 |
# File 'lib/biointerchange/life_science_registry.rb', line 233 def self.sprint "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$id&display_opts=Prints&category=None&queryform=false®expr=off" end |
.spto ⇒ Object
3217 3218 3219 |
# File 'lib/biointerchange/life_science_registry.rb', line 3217 def self.spto "http://purl.obolibrary.org/obo/$id" end |
.srd ⇒ Object
3221 3222 3223 |
# File 'lib/biointerchange/life_science_registry.rb', line 3221 def self.srd "http://rapeseed.plantsignal.cn/viewGene.do?id=$id" end |
.srpdb ⇒ Object
3225 3226 3227 |
# File 'lib/biointerchange/life_science_registry.rb', line 3225 def self.srpdb "http://rnp.uthct.edu/rnp/SRPDB/rna/sequences/fasta/$id.fasta" end |
.sstoss ⇒ Object
3229 3230 3231 |
# File 'lib/biointerchange/life_science_registry.rb', line 3229 def self.sstoss "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$id" end |
.straininfonet ⇒ Object
3233 3234 3235 |
# File 'lib/biointerchange/life_science_registry.rb', line 3233 def self.straininfonet "http://www.straininfo.net/taxa/$id" end |
.strepto_db ⇒ Object
3237 3238 3239 |
# File 'lib/biointerchange/life_science_registry.rb', line 3237 def self.strepto_db "http://oger.tu-bs.de/websites/query_result.php?index=1&dbno=$id" end |
.suba ⇒ Object
3241 3242 3243 |
# File 'lib/biointerchange/life_science_registry.rb', line 3241 def self.suba "http://suba.plantenergy.uwa.edu.au/flatfile.php?id=$id" end |
.subtiwiki ⇒ Object
477 478 479 |
# File 'lib/biointerchange/life_science_registry.rb', line 477 def self.subtiwiki "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$id" end |
.sulfolobus ⇒ Object
3245 3246 3247 |
# File 'lib/biointerchange/life_science_registry.rb', line 3245 def self.sulfolobus "http://www.sulfolobus.org/cbin/mutagen.pl?page=misc&gidinfo=$id" end |
.superdrug ⇒ Object
3249 3250 3251 |
# File 'lib/biointerchange/life_science_registry.rb', line 3249 def self.superdrug "http://bioinf.charite.de/superdrug/fullinfo.php?cas=$id" end |
.superfamily ⇒ Object
1125 1126 1127 |
# File 'lib/biointerchange/life_science_registry.rb', line 1125 def self.superfamily "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?sunid=$id" end |
.superhapten ⇒ Object
3253 3254 3255 |
# File 'lib/biointerchange/life_science_registry.rb', line 3253 def self.superhapten "http://bioinformatics.charite.de/superhapten/fullinfo_hapten_chime.php?id=$id" end |
.supernatural ⇒ Object
3257 3258 3259 |
# File 'lib/biointerchange/life_science_registry.rb', line 3257 def self.supernatural "http://bioinformatics.charite.de/supernatural/marvin/fullinfo_roempp_marvin.php?cas=$id" end |
.superscent ⇒ Object
3261 3262 3263 |
# File 'lib/biointerchange/life_science_registry.rb', line 3261 def self.superscent "http://bioinformatics.charite.de/superscent/src/fullinfo.php?cas=$id" end |
.supersite ⇒ Object
3265 3266 3267 |
# File 'lib/biointerchange/life_science_registry.rb', line 3265 def self.supersite "http://bioinf-tomcat.charite.de/supersite/resultPDB.faces?pdbid=$id" end |
.supertoxic ⇒ Object
3269 3270 3271 |
# File 'lib/biointerchange/life_science_registry.rb', line 3269 def self.supertoxic "http://bioinformatics.charite.de/supertoxic/index.php?site=detail_view&ids=($id)" end |
.supfam ⇒ Object
3273 3274 3275 |
# File 'lib/biointerchange/life_science_registry.rb', line 3273 def self.supfam "http://pauling.mbu.iisc.ernet.in/supfam/cgi/display_pfam.cgi?name=$id" end |
.swiss2dpage ⇒ Object
3277 3278 3279 |
# File 'lib/biointerchange/life_science_registry.rb', line 3277 def self.swiss2dpage "http://ca.expasy.org/swiss-2dpage/ac=$id" end |
.swissmodel ⇒ Object
857 858 859 |
# File 'lib/biointerchange/life_science_registry.rb', line 857 def self.swissmodel "http://swissmodel.expasy.org/repository/smr.php?sptr_ac=$id" end |
.syfpeithi ⇒ Object
3281 3282 3283 |
# File 'lib/biointerchange/life_science_registry.rb', line 3281 def self.syfpeithi "http://www.ebi.ac.uk/cgi-bin/emblfetch?$id" end |
.symptom ⇒ Object
3285 3286 3287 |
# File 'lib/biointerchange/life_science_registry.rb', line 3285 def self.symptom "http://purl.obolibrary.org/obo/$id" end |
.sysbodyfluid ⇒ Object
3289 3290 3291 |
# File 'lib/biointerchange/life_science_registry.rb', line 3289 def self.sysbodyfluid "http://www.biosino.org/bodyfluid/protein.jsp?proteinID=$id" end |
.systers ⇒ Object
3293 3294 3295 |
# File 'lib/biointerchange/life_science_registry.rb', line 3293 def self.systers "http://systers.molgen.mpg.de/cgi-bin/nph-fetchcluster.pl?CLNR=$id" end |
.systomonas_compound ⇒ Object
3297 3298 3299 |
# File 'lib/biointerchange/life_science_registry.rb', line 3297 def self.systomonas_compound "http://www.systomonas.de/compound.php?cp_acc=$id" end |
.systomonas_gene ⇒ Object
3301 3302 3303 |
# File 'lib/biointerchange/life_science_registry.rb', line 3301 def self.systomonas_gene "http://www.systomonas.de/gene.php?ge_acc=$id" end |
.systomonas_interaction ⇒ Object
3305 3306 3307 |
# File 'lib/biointerchange/life_science_registry.rb', line 3305 def self.systomonas_interaction "http://www.systomonas.de/interaction.php?ia_acc=$id" end |
.systomonas_pathways ⇒ Object
3309 3310 3311 |
# File 'lib/biointerchange/life_science_registry.rb', line 3309 def self.systomonas_pathways "http://www.systomonas.de/pathway.php?pa_acc=$id" end |
.systomonas_protein ⇒ Object
3313 3314 3315 |
# File 'lib/biointerchange/life_science_registry.rb', line 3313 def self.systomonas_protein "http://www.systomonas.de/protein.php?pr_acc=$id" end |
.t1dbase ⇒ Object
3317 3318 3319 |
# File 'lib/biointerchange/life_science_registry.rb', line 3317 def self.t1dbase "http://t1dbase.org/page/Overview/display/gene_id/$id" end |
.t3db ⇒ Object
385 386 387 |
# File 'lib/biointerchange/life_science_registry.rb', line 385 def self.t3db "http://www.t3db.org/toxins/$id" end |
.taed ⇒ Object
3321 3322 3323 |
# File 'lib/biointerchange/life_science_registry.rb', line 3321 def self.taed "http://www.sbc.su.se/~malin_a/TAEDcorr/$id.html" end |
.tair_gene ⇒ Object
185 186 187 |
# File 'lib/biointerchange/life_science_registry.rb', line 185 def self.tair_gene "http://arabidopsis.org/servlets/TairObject?accession=$id" end |
.tair_locus ⇒ Object
189 190 191 |
# File 'lib/biointerchange/life_science_registry.rb', line 189 def self.tair_locus "http://arabidopsis.org/servlets/TairObject?type=locus&name=$id" end |
.tair_protein ⇒ Object
181 182 183 |
# File 'lib/biointerchange/life_science_registry.rb', line 181 def self.tair_protein "http://arabidopsis.org/servlets/TairObject?accession=$id" end |
.tao ⇒ Object
3325 3326 3327 |
# File 'lib/biointerchange/life_science_registry.rb', line 3325 def self.tao "http://purl.obolibrary.org/obo/$id" end |
.tarbase ⇒ Object
1105 1106 1107 |
# File 'lib/biointerchange/life_science_registry.rb', line 1105 def self.tarbase "http://diana.cslab.ece.ntua.gr/DianaToolsNew/index.php?r=tarbase/index&mirnas=$id" end |
.taxonomy ⇒ Object
25 26 27 |
# File 'lib/biointerchange/life_science_registry.rb', line 25 def self.taxonomy "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$id" end |
.taxrank ⇒ Object
3329 3330 3331 |
# File 'lib/biointerchange/life_science_registry.rb', line 3329 def self.taxrank "http://purl.obolibrary.org/obo/$id" end |
.tbdb ⇒ Object
3333 3334 3335 |
# File 'lib/biointerchange/life_science_registry.rb', line 3333 def self.tbdb "http://genome.tbdb.org/annotation/genome/tbdb/GeneDetails.html?sp=$id" end |
.tbestdb ⇒ Object
3337 3338 3339 |
# File 'lib/biointerchange/life_science_registry.rb', line 3337 def self.tbestdb "http://tbestdb.bcm.umontreal.ca/searches/contig.php?conDeID=$id" end |
.tc7ap ⇒ Object
3341 3342 3343 |
# File 'lib/biointerchange/life_science_registry.rb', line 3341 def self.tc7ap "http://www.chr7.org/cgi-bin/geneview?id=$id" end |
.tccd ⇒ Object
3345 3346 3347 |
# File 'lib/biointerchange/life_science_registry.rb', line 3345 def self.tccd "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$id" end |
.tcdb ⇒ Object
149 150 151 |
# File 'lib/biointerchange/life_science_registry.rb', line 149 def self.tcdb "http://www.tcdb.org/search/result.php?tc=$id" end |
.tcruzidb ⇒ Object
3349 3350 3351 |
# File 'lib/biointerchange/life_science_registry.rb', line 3349 def self.tcruzidb "http://tcruzidb.org/tcruzidb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&project_id=&primary_key=$id" end |
.tecrdb ⇒ Object
3353 3354 3355 |
# File 'lib/biointerchange/life_science_registry.rb', line 3353 def self.tecrdb "http://xpdb.nist.gov/enzyme_thermodynamics/enzyme_data1.pl?T1=$id" end |
.tess ⇒ Object
3357 3358 3359 |
# File 'lib/biointerchange/life_science_registry.rb', line 3357 def self.tess "http://www.cbil.upenn.edu/cgi-bin/tess/tess?request=FCT-DBRTRV-Accno&key=$id" end |
.tgd ⇒ Object
3361 3362 3363 |
# File 'lib/biointerchange/life_science_registry.rb', line 3361 def self.tgd "http://phage.bioc.tulane.edu/cgi-bin/gbrowse/$id?name=$id" end |
.tgdb ⇒ Object
3365 3366 3367 |
# File 'lib/biointerchange/life_science_registry.rb', line 3365 def self.tgdb "http://www.tumor-gene.org/cgi-bin/TGDB/tgdb_fetch_gene.cgi?gene=$id" end |
.tgi ⇒ Object
3369 3370 3371 |
# File 'lib/biointerchange/life_science_registry.rb', line 3369 def self.tgi "http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=$id" end |
.tied ⇒ Object
3373 3374 3375 |
# File 'lib/biointerchange/life_science_registry.rb', line 3373 def self.tied "http://www.iedb.org/epId/$id" end |
.tigrfams ⇒ Object
1077 1078 1079 |
# File 'lib/biointerchange/life_science_registry.rb', line 1077 def self.tigrfams "http://cmr.jcvi.org/cgi-bin/CMR/HmmReport.cgi?hmm_acc=$id" end |
.tol ⇒ Object
3377 3378 3379 |
# File 'lib/biointerchange/life_science_registry.rb', line 3377 def self.tol "http://tolweb.org/$id" end |
.tomatest_db ⇒ Object
3381 3382 3383 |
# File 'lib/biointerchange/life_science_registry.rb', line 3381 def self.tomatest_db "http://biosrv.cab.unina.it/solestdb/clusterview.php?clid=$id" end |
.topdb ⇒ Object
3385 3386 3387 |
# File 'lib/biointerchange/life_science_registry.rb', line 3385 def self.topdb "http://topdb.enzim.hu/?m=show&id=$id" end |
.topfind ⇒ Object
945 946 947 |
# File 'lib/biointerchange/life_science_registry.rb', line 945 def self.topfind "http://clipserve.clip.ubc.ca/topfind/proteins/$id" end |
.toxodb ⇒ Object
3389 3390 3391 |
# File 'lib/biointerchange/life_science_registry.rb', line 3389 def self.toxodb "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id" end |
.toxoplasma ⇒ Object
561 562 563 |
# File 'lib/biointerchange/life_science_registry.rb', line 561 def self.toxoplasma "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id" end |
.tpdb ⇒ Object
3393 3394 3395 |
# File 'lib/biointerchange/life_science_registry.rb', line 3393 def self.tpdb "http://tpdb.medchem.ku.edu:8080/protein_database/protein_details.jsp?prot_id=$id" end |
.tpmd ⇒ Object
3397 3398 3399 |
# File 'lib/biointerchange/life_science_registry.rb', line 3397 def self.tpmd "http://tpmd2.nhri.org.tw/tpmd/php-bin/filter.php?search=$id" end |
.tptad ⇒ Object
3401 3402 3403 |
# File 'lib/biointerchange/life_science_registry.rb', line 3401 def self.tptad "http://plantta.jcvi.org/cgi-bin/plantta_report.pl?ta=$id" end |
.transfactomedb ⇒ Object
3405 3406 3407 |
# File 'lib/biointerchange/life_science_registry.rb', line 3405 def self.transfactomedb "http://bussemaker.bio.columbia.edu:8080/ytdb-cgi/[?RNA/?DNA]/ViewPSAM?ms=[?RNA/?DNA]&M=$id" end |
.transportdb ⇒ Object
3409 3410 3411 |
# File 'lib/biointerchange/life_science_registry.rb', line 3409 def self.transportdb "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=$id" end |
.transterm ⇒ Object
3413 3414 3415 |
# File 'lib/biointerchange/life_science_registry.rb', line 3413 def self.transterm "http://mrna.otago.ac.nz/cgi-bin/tt_data_browse/RNAMotif?PatID=$id" end |
.tred ⇒ Object
3417 3418 3419 |
# File 'lib/biointerchange/life_science_registry.rb', line 3417 def self.tred "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=$id" end |
.treebase ⇒ Object
1069 1070 1071 |
# File 'lib/biointerchange/life_science_registry.rb', line 1069 def self.treebase "http://www.treebase.org/treebase-web/search/study/summary.html?id=$id" end |
.treefam ⇒ Object
3421 3422 3423 |
# File 'lib/biointerchange/life_science_registry.rb', line 3421 def self.treefam "http://www.treefam.org/cgi-bin/TFinfo.pl?ac=$id" end |
.trichdb ⇒ Object
565 566 567 |
# File 'lib/biointerchange/life_science_registry.rb', line 565 def self.trichdb "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id" end |
.tritrypdb ⇒ Object
569 570 571 |
# File 'lib/biointerchange/life_science_registry.rb', line 569 def self.tritrypdb "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id" end |
.trmp ⇒ Object
3425 3426 3427 |
# File 'lib/biointerchange/life_science_registry.rb', line 3425 def self.trmp "http://bidd.nus.edu.sg/group/pathway/$id" end |
.trnadbce ⇒ Object
3429 3430 3431 |
# File 'lib/biointerchange/life_science_registry.rb', line 3429 def self.trnadbce "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$id" end |
.ttd_drug ⇒ Object
349 350 351 |
# File 'lib/biointerchange/life_science_registry.rb', line 349 def self.ttd_drug "http://bidd.nus.edu.sg/group/cjttd/ZFTTDDRUG.asp?ID=$id" end |
.ttd_target ⇒ Object
353 354 355 |
# File 'lib/biointerchange/life_science_registry.rb', line 353 def self.ttd_target "http://bidd.nus.edu.sg/group/cjttd/ZFTTDDetail.asp?ID=$id" end |
.tto ⇒ Object
3433 3434 3435 |
# File 'lib/biointerchange/life_science_registry.rb', line 3433 def self.tto "http://purl.obolibrary.org/obo/$id" end |
.tuberculist ⇒ Object
3437 3438 3439 |
# File 'lib/biointerchange/life_science_registry.rb', line 3437 def self.tuberculist "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$id" end |
.uagb ⇒ Object
3441 3442 3443 |
# File 'lib/biointerchange/life_science_registry.rb', line 3441 def self.uagb "http://archaea.ucsc.edu/cgi-bin/hgGateway?db=$id" end |
.ugmicrosatdb ⇒ Object
3445 3446 3447 |
# File 'lib/biointerchange/life_science_registry.rb', line 3445 def self.ugmicrosatdb "http://www.veenuash.info/veenu/chromo.asp?ns=$id" end |
.unigene ⇒ Object
1113 1114 1115 |
# File 'lib/biointerchange/life_science_registry.rb', line 1113 def self.unigene "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$id" end |
.uniparc ⇒ Object
153 154 155 |
# File 'lib/biointerchange/life_science_registry.rb', line 153 def self.uniparc "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$id" end |
.unipathway ⇒ Object
313 314 315 |
# File 'lib/biointerchange/life_science_registry.rb', line 313 def self.unipathway "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$id" end |
.uniprot ⇒ Object
21 22 23 |
# File 'lib/biointerchange/life_science_registry.rb', line 21 def self.uniprot "http://www.uniprot.org/uniprot/$id" end |
.uniprot_taxonomy ⇒ Object
1161 1162 1163 |
# File 'lib/biointerchange/life_science_registry.rb', line 1161 def self.uniprot_taxonomy "http://www.uniprot.org/taxonomy/$id" end |
.uniref ⇒ Object
3449 3450 3451 |
# File 'lib/biointerchange/life_science_registry.rb', line 3449 def self.uniref "http://www.uniprot.org/uniref/$id" end |
.unite ⇒ Object
1117 1118 1119 |
# File 'lib/biointerchange/life_science_registry.rb', line 1117 def self.unite "http://unite.ut.ee/bl_forw.php?nimi=$id" end |
.unprot_keywords ⇒ Object
3453 3454 3455 |
# File 'lib/biointerchange/life_science_registry.rb', line 3453 def self.unprot_keywords "http://www.uniprot.org/keywords/$id" end |
.uo ⇒ Object
493 494 495 |
# File 'lib/biointerchange/life_science_registry.rb', line 493 def self.uo "http://www.ebi.ac.uk/ontology-lookup/?termId=$id" end |
.utrdb_utrsite ⇒ Object
3457 3458 3459 |
# File 'lib/biointerchange/life_science_registry.rb', line 3457 def self.utrdb_utrsite "http://utrdb.ba.itb.cnr.it/getgene/$id" end |
.utrome ⇒ Object
3461 3462 3463 |
# File 'lib/biointerchange/life_science_registry.rb', line 3461 def self.utrome "http://128.122.61.5/cgi-bin/UTRome/utrome.cgi?action=gene&geneid=$id" end |
.vbase2 ⇒ Object
1089 1090 1091 |
# File 'lib/biointerchange/life_science_registry.rb', line 1089 def self.vbase2 "http://www.vbase2.org/vgene.php?id=$id" end |
.vectorbase ⇒ Object
861 862 863 |
# File 'lib/biointerchange/life_science_registry.rb', line 861 def self.vectorbase "http://www.vectorbase.org/[?species_name]/Gene/Summary?db=core;g=$id" end |
.vega ⇒ Object
3465 3466 3467 |
# File 'lib/biointerchange/life_science_registry.rb', line 3465 def self.vega "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$id" end |
.vfdb ⇒ Object
3469 3470 3471 |
# File 'lib/biointerchange/life_science_registry.rb', line 3469 def self.vfdb "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$id" end |
.viperdb ⇒ Object
3473 3474 3475 |
# File 'lib/biointerchange/life_science_registry.rb', line 3473 def self.viperdb "http://viperdb.scripps.edu/info_page.php?VDB=$id" end |
.virmirdb ⇒ Object
3477 3478 3479 |
# File 'lib/biointerchange/life_science_registry.rb', line 3477 def self.virmirdb "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=$id" end |
.viroligo ⇒ Object
3481 3482 3483 |
# File 'lib/biointerchange/life_science_registry.rb', line 3481 def self.viroligo "http://viroligo.okstate.edu/main.php?vid=$id" end |
.virsirna ⇒ Object
921 922 923 |
# File 'lib/biointerchange/life_science_registry.rb', line 921 def self.virsirna "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$id" end |
.vita ⇒ Object
3485 3486 3487 |
# File 'lib/biointerchange/life_science_registry.rb', line 3485 def self.vita "http://vita.mbc.nctu.edu.tw/search.php?acc=$id" end |
.vkcdb ⇒ Object
3489 3490 3491 |
# File 'lib/biointerchange/life_science_registry.rb', line 3489 def self.vkcdb "http://vkcdb.biology.ualberta.ca/cgi-bin/vkcdb/vkcdb-scp/entry.cgi?vkcid=$id" end |
.vmd ⇒ Object
3493 3494 3495 |
# File 'lib/biointerchange/life_science_registry.rb', line 3493 def self.vmd "http://vmd.vbi.vt.edu/cgi-bin/browse/browserDetail_new.cgi?ID=$id" end |
.vz ⇒ Object
3497 3498 3499 |
# File 'lib/biointerchange/life_science_registry.rb', line 3497 def self.vz "http://viralzone.expasy.org/all_by_protein/$id.html" end |
.wbbt ⇒ Object
3501 3502 3503 |
# File 'lib/biointerchange/life_science_registry.rb', line 3501 def self.wbbt "http://wormbase.org/db/ontology/anatomy?name=$id" end |
.wbls ⇒ Object
3505 3506 3507 |
# File 'lib/biointerchange/life_science_registry.rb', line 3505 def self.wbls "http://purl.obolibrary.org/obo/$id" end |
.wbphenotype ⇒ Object
3509 3510 3511 |
# File 'lib/biointerchange/life_science_registry.rb', line 3509 def self.wbphenotype "http://purl.obolibrary.org/obo/$id" end |
.webelements ⇒ Object
3513 3514 3515 |
# File 'lib/biointerchange/life_science_registry.rb', line 3513 def self.webelements "http://webelements.com/$id" end |
.wfleabase ⇒ Object
3517 3518 3519 |
# File 'lib/biointerchange/life_science_registry.rb', line 3517 def self.wfleabase "http://wfleabase.org/genepage/daphnia/$id" end |
.wikipathways ⇒ Object
285 286 287 |
# File 'lib/biointerchange/life_science_registry.rb', line 285 def self.wikipathways "http://www.wikipathways.org/index.php/Pathway:$id" end |
.wikipedia ⇒ Object
1153 1154 1155 |
# File 'lib/biointerchange/life_science_registry.rb', line 1153 def self.wikipedia "http://en.wikipedia.org/wiki/$id" end |
.worfdb ⇒ Object
1005 1006 1007 |
# File 'lib/biointerchange/life_science_registry.rb', line 1005 def self.worfdb "http://worfdb.dfci.harvard.edu/searchallwormorfs.pl?sid=$id" end |
.world2dpage ⇒ Object
3521 3522 3523 |
# File 'lib/biointerchange/life_science_registry.rb', line 3521 def self.world2dpage "http://world-2dpage.expasy.org/repository/database=$id" end |
.wormbase_gene ⇒ Object
3525 3526 3527 |
# File 'lib/biointerchange/life_science_registry.rb', line 3525 def self.wormbase_gene "http://www.wormbase.org/species/c_elegans/gene/$id" end |
.wormbase_rnai ⇒ Object
3529 3530 3531 |
# File 'lib/biointerchange/life_science_registry.rb', line 3529 def self.wormbase_rnai "http://www.wormbase.org/species/c_elegans/rnai/$id" end |
.wormbook ⇒ Object
3533 3534 3535 |
# File 'lib/biointerchange/life_science_registry.rb', line 3533 def self.wormbook "http://www.wormbook.org/chapters/$id" end |
.wormpep ⇒ Object
117 118 119 |
# File 'lib/biointerchange/life_science_registry.rb', line 117 def self.wormpep "http://www.wormbase.org/db/seq/protein?name=$id" end |
.xao ⇒ Object
3537 3538 3539 |
# File 'lib/biointerchange/life_science_registry.rb', line 3537 def self.xao "http://www.xenbase.org/anatomy/static/organs/$id.jsp" end |
.xenbase ⇒ Object
689 690 691 |
# File 'lib/biointerchange/life_science_registry.rb', line 689 def self.xenbase "http://www.xenbase.org/gene/showgene.do?method=display&geneId=$id" end |
.ycmn_complex ⇒ Object
3541 3542 3543 |
# File 'lib/biointerchange/life_science_registry.rb', line 3541 def self.ycmn_complex "http://www.comp-sys-bio.org/yeastnet/v4/showComplexes.php?complex_id=$id" end |
.ycmn_compound ⇒ Object
3545 3546 3547 |
# File 'lib/biointerchange/life_science_registry.rb', line 3545 def self.ycmn_compound "http://www.comp-sys-bio.org/yeastnet/v4/showCompounds.php?cpd_id=$id" end |
.ycmn_gene ⇒ Object
3549 3550 3551 |
# File 'lib/biointerchange/life_science_registry.rb', line 3549 def self.ycmn_gene "http://www.comp-sys-bio.org/yeastnet/v4/showGenes.php?gene_id=$id" end |
.ycmn_protein ⇒ Object
3553 3554 3555 |
# File 'lib/biointerchange/life_science_registry.rb', line 3553 def self.ycmn_protein "http://www.comp-sys-bio.org/yeastnet/v4/showProteins.php?protein_id=$id" end |
.ycmn_reaction ⇒ Object
3557 3558 3559 |
# File 'lib/biointerchange/life_science_registry.rb', line 3557 def self.ycmn_reaction "http://www.comp-sys-bio.org/yeastnet/v4/showEvents.php?event_id=$id" end |
.yeastfunc ⇒ Object
3561 3562 3563 |
# File 'lib/biointerchange/life_science_registry.rb', line 3561 def self.yeastfunc "http://func.med.harvard.edu/yeast/genes/list_functional_scores/$id" end |
.yeastract ⇒ Object
3565 3566 3567 |
# File 'lib/biointerchange/life_science_registry.rb', line 3565 def self.yeastract "http://www.yeastract.com/view.php?existing=locus&orfname=$id" end |
.ygob ⇒ Object
3569 3570 3571 |
# File 'lib/biointerchange/life_science_registry.rb', line 3569 def self.ygob "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$id" end |
.yh_database ⇒ Object
3573 3574 3575 |
# File 'lib/biointerchange/life_science_registry.rb', line 3573 def self.yh_database "http://yh.genomics.org.cn/mapview.jsp?path=$id" end |
.yrc ⇒ Object
3577 3578 3579 |
# File 'lib/biointerchange/life_science_registry.rb', line 3577 def self.yrc "http://www.yeastrc.org/pdr/viewProtein.do?id=$id" end |
.ysd ⇒ Object
3581 3582 3583 |
# File 'lib/biointerchange/life_science_registry.rb', line 3581 def self.ysd "http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/snrs/$id.php" end |
.zfa ⇒ Object
3585 3586 3587 |
# File 'lib/biointerchange/life_science_registry.rb', line 3585 def self.zfa "http://purl.obolibrary.org/obo/$id" end |
.zfin ⇒ Object
297 298 299 |
# File 'lib/biointerchange/life_science_registry.rb', line 297 def self.zfin "http://zfin.org/cgi-bin/webdriver?MIval=aa-markerview.apg&OID=$id" end |
.zifdb ⇒ Object
3589 3590 3591 |
# File 'lib/biointerchange/life_science_registry.rb', line 3589 def self.zifdb "http://bindr.gdcb.iastate.edu:8080/ZiFDB/controller/checkArticle?artId=$id" end |