Module: Bix::Blast
- Defined in:
- lib/bix/blast.rb
Defined Under Namespace
Class Method Summary collapse
Class Method Details
.get_all_query_hits(io, pref_min_aln_len = 0) ⇒ Object
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# File 'lib/bix/blast.rb', line 66 def self.get_all_query_hits(io, pref_min_aln_len=0) hits_by_query = {} # Read all blast hits into memory, group them by query name for line in io next if line[0] == '#' h = Hit.new(line) hits_by_query[h.query] ||= [] hits_by_query[h.query] << h end # Build vector of QueryHits objects query_hits = [] for query, hits in hits_by_query query_hits << QueryHits.new(hits, pref_min_aln_len) end return query_hits end |