Class: Bolognese::Metadata

Inherits:
Object
  • Object
show all
Includes:
AuthorUtils, DataciteUtils, DateUtils, DoiUtils, Readers::BibtexReader, Readers::CiteprocReader, Readers::CodemetaReader, Readers::CrossciteReader, Readers::CrossrefReader, Readers::DataciteJsonReader, Readers::DataciteReader, Readers::RisReader, Readers::SchemaOrgReader, Utils, Writers::BibtexWriter, Writers::CitationWriter, Writers::CiteprocWriter, Writers::CodemetaWriter, Writers::CrossciteWriter, Writers::CrossrefWriter, Writers::DataciteJsonWriter, Writers::DataciteWriter, Writers::JatsWriter, Writers::RdfXmlWriter, Writers::RisWriter, Writers::SchemaOrgWriter, Writers::TurtleWriter
Defined in:
lib/bolognese/metadata.rb

Direct Known Subclasses

Orcid

Constant Summary

Constants included from Readers::SchemaOrgReader

Readers::SchemaOrgReader::SO_TO_DC_RELATION_TYPES

Constants included from Readers::RisReader

Readers::RisReader::RIS_TO_BIB_TRANSLATIONS, Readers::RisReader::RIS_TO_CP_TRANSLATIONS, Readers::RisReader::RIS_TO_SO_TRANSLATIONS

Constants included from Readers::CrossrefReader

Readers::CrossrefReader::CONTACT_EMAIL, Readers::CrossrefReader::CR_TO_BIB_TRANSLATIONS, Readers::CrossrefReader::CR_TO_SO_TRANSLATIONS

Constants included from Readers::CiteprocReader

Readers::CiteprocReader::CP_TO_RIS_TRANSLATIONS, Readers::CiteprocReader::CP_TO_SO_TRANSLATIONS

Constants included from Readers::BibtexReader

Readers::BibtexReader::BIB_TO_CP_TRANSLATIONS, Readers::BibtexReader::BIB_TO_RIS_TRANSLATIONS, Readers::BibtexReader::BIB_TO_SO_TRANSLATIONS

Constants included from Utils

Utils::CR_TO_CP_TRANSLATIONS, Utils::CR_TO_JATS_TRANSLATIONS, Utils::CR_TO_RIS_TRANSLATIONS, Utils::DC_TO_CP_TRANSLATIONS, Utils::DC_TO_RIS_TRANSLATIONS, Utils::DC_TO_SO_TRANSLATIONS, Utils::LICENSE_NAMES, Utils::SO_TO_BIB_TRANSLATIONS, Utils::SO_TO_CP_TRANSLATIONS, Utils::SO_TO_DC_TRANSLATIONS, Utils::SO_TO_JATS_TRANSLATIONS, Utils::SO_TO_RIS_TRANSLATIONS

Constants included from AuthorUtils

AuthorUtils::IDENTIFIER_SCHEME_URIS

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Writers::TurtleWriter

#turtle

Methods included from Writers::SchemaOrgWriter

#schema_hsh, #schema_org

Methods included from Writers::RisWriter

#ris

Methods included from Writers::RdfXmlWriter

#rdf_xml

Methods included from Writers::JatsWriter

#date, #insert_authors, #insert_citation, #insert_citation_title, #insert_contributor, #insert_editors, #insert_fpage, #insert_issue, #insert_lpage, #insert_pub_id, #insert_publication_date, #insert_publisher_name, #insert_source, #insert_version, #insert_volume, #is_article?, #is_chapter?, #is_data?, #jats, #publication_type

Methods included from Writers::DataciteJsonWriter

#datacite_json

Methods included from Writers::DataciteWriter

#datacite

Methods included from Writers::CrossrefWriter

#crossref

Methods included from Writers::CrossciteWriter

#crosscite

Methods included from Writers::CodemetaWriter

#codemeta

Methods included from Writers::CiteprocWriter

#citeproc

Methods included from Writers::CitationWriter

#citation

Methods included from Writers::BibtexWriter

#bibtex

Methods included from Readers::SchemaOrgReader

#get_schema_org, #read_schema_org, #schema_org_has_part, #schema_org_is_identical_to, #schema_org_is_new_version_of, #schema_org_is_part_of, #schema_org_is_previous_version_of, #schema_org_is_referenced_by, #schema_org_is_supplement_to, #schema_org_is_supplemented_by, #schema_org_references, #schema_org_related_identifier, #schema_org_reverse_related_identifier

Methods included from Readers::RisReader

#read_ris, #ris_meta

Methods included from Readers::DataciteJsonReader

#read_datacite_json

Methods included from Readers::DataciteReader

#datacite_date, #datacite_funder_contributor, #datacite_funding_reference, #datacite_has_part, #datacite_is_identical_to, #datacite_is_new_version_of, #datacite_is_original_form_of, #datacite_is_part_of, #datacite_is_previous_version_of, #datacite_is_referenced_by, #datacite_is_reviewed_by, #datacite_is_supplement_to, #datacite_is_supplemented_by, #datacite_is_variant_form_of, #datacite_references, #datacite_related_identifier, #datacite_reviews, #get_datacite, #read_datacite

Methods included from Readers::CrossrefReader

#crossref_alternate_name, #crossref_date_published, #crossref_description, #crossref_funding_reference, #crossref_is_part_of, #crossref_license, #crossref_people, #crossref_references, #get_crossref, #read_crossref

Methods included from Readers::CrossciteReader

#read_crosscite

Methods included from Readers::CodemetaReader

#get_codemeta, #read_codemeta

Methods included from Readers::CiteprocReader

#read_citeproc

Methods included from Readers::BibtexReader

#read_bibtex

Methods included from Utils

#find_from_format, #find_from_format_by_ext, #find_from_format_by_id, #find_from_format_by_string, #from_citeproc, #from_schema_org, #get_date_from_date_parts, #get_date_from_parts, #get_date_parts, #github_as_codemeta_url, #github_as_owner_url, #github_as_release_url, #github_as_repo_url, #github_from_url, #github_owner_from_url, #github_release_from_url, #github_repo_from_url, #jsonlint, #map_hash_keys, #normalize_id, #normalize_ids, #normalize_licenses, #normalize_orcid, #normalize_url, #orcid_as_url, #orcid_from_url, #parse_attributes, #sanitize, #to_citeproc, #to_ris, #to_schema_org, #validate_orcid, #validate_orcid_scheme, #validate_url

Methods included from DataciteUtils

#datacite_errors, #datacite_xml, #insert_alternate_identifiers, #insert_contributors, #insert_creators, #insert_date, #insert_dates, #insert_descriptions, #insert_funding_reference, #insert_funding_references, #insert_identifier, #insert_person, #insert_publication_year, #insert_publisher, #insert_related_identifiers, #insert_resource_type, #insert_rights_list, #insert_subjects, #insert_title, #insert_titles, #insert_version, #insert_work, #rel_identifier, #resource_type, #root_attributes

Methods included from DateUtils

#get_date_from_parts, #get_date_parts, #get_date_parts_from_parts, #get_datetime_from_iso8601, #get_year_month, #get_year_month_day

Methods included from AuthorUtils

#authors_as_string, #cleanup_author, #get_authors, #get_name_identifiers, #get_one_author, #is_personal_name?, #name_exists?

Methods included from DoiUtils

#doi_as_url, #doi_from_url, #doi_resolver, #doi_search, #get_doi_ra, #normalize_doi, #validate_doi, #validate_prefix

Constructor Details

#initialize(input: nil, from: nil, style: nil, locale: nil, regenerate: false, **options) ⇒ Metadata

Returns a new instance of Metadata.



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# File 'lib/bolognese/metadata.rb', line 83

def initialize(input: nil, from: nil, style: nil, locale: nil, regenerate: false, **options)
  id = normalize_id(input, options)

  if id.present?
    @from = from || find_from_format(id: id)

    # generate name for method to call dynamically
    hsh = @from.present? ? send("get_" + @from, id: id, sandbox: options[:sandbox]) : nil
    string = hsh.to_h.fetch("string", nil)
  elsif File.exist?(input)
    ext = File.extname(input)
    if %w(.bib .ris .xml .json).include?(ext)
      string = IO.read(input)
      @from = from || find_from_format(string: string, ext: ext)
    else
      $stderr.puts "File type #{ext} not supported"
      exit 1
    end
  else
    hsh = { "url" => options[:url],
            "state" => options[:state],
            "date_registered" => options[:date_registered],
            "date_updated" => options[:date_updated],
            "provider_id" => options[:provider_id],
            "client_id" => options[:client_id] }
    string = input
    @from = from || find_from_format(string: string)
  end

  # generate name for method to call dynamically
  @metadata = @from.present? ? send("read_" + @from, string: string, sandbox: options[:sandbox], doi: options[:doi], url: options[:url]) : {}
  @raw = string.present? ? string.strip : nil

  # replace DOI in XML if provided in options
  if @from == "datacite" && options[:doi].present?
    doc = Nokogiri::XML(string, nil, 'UTF-8', &:noblanks)
    node = doc.at_css("identifier")
    node.content = options[:doi].upcase
    @raw = doc.to_xml.strip
  end

  @should_passthru = (@from == "datacite") && !regenerate

  @url = hsh.to_h["url"].presence
  @state = hsh.to_h["state"].presence
  @date_registered = hsh.to_h["date_registered"].presence
  @date_updated = hsh.to_h["date_updated"].presence
  @provider_id = hsh.to_h["provider_id"].presence
  @client_id = hsh.to_h["client_id"].presence

  @style = style || "apa"
  @locale = locale || "en-US"
end

Instance Attribute Details

#additional_type ⇒ Object

Returns the value of attribute additional_type.



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# File 'lib/bolognese/metadata.rb', line 64

def additional_type
  @additional_type
end

#alternate_name ⇒ Object

Returns the value of attribute alternate_name.



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# File 'lib/bolognese/metadata.rb', line 64

def alternate_name
  @alternate_name
end

#author ⇒ Object

Returns the value of attribute author.



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# File 'lib/bolognese/metadata.rb', line 64

def author
  @author
end

#bibtex_type ⇒ Object

Returns the value of attribute bibtex_type.



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# File 'lib/bolognese/metadata.rb', line 64

def bibtex_type
  @bibtex_type
end

#citeproc_type ⇒ Object

Returns the value of attribute citeproc_type.



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# File 'lib/bolognese/metadata.rb', line 64

def citeproc_type
  @citeproc_type
end

#cites ⇒ Object

Returns the value of attribute cites.



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# File 'lib/bolognese/metadata.rb', line 64

def cites
  @cites
end

#client_id ⇒ Object

Returns the value of attribute client_id.



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# File 'lib/bolognese/metadata.rb', line 64

def client_id
  @client_id
end

#compiles ⇒ Object

Returns the value of attribute compiles.



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# File 'lib/bolognese/metadata.rb', line 64

def compiles
  @compiles
end

#content_size ⇒ Object

Returns the value of attribute content_size.



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# File 'lib/bolognese/metadata.rb', line 64

def content_size
  @content_size
end

#continues ⇒ Object

Returns the value of attribute continues.



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# File 'lib/bolognese/metadata.rb', line 64

def continues
  @continues
end

#contributor ⇒ Object

Returns the value of attribute contributor.



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# File 'lib/bolognese/metadata.rb', line 64

def contributor
  @contributor
end

#date_accepted ⇒ Object

Returns the value of attribute date_accepted.



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# File 'lib/bolognese/metadata.rb', line 64

def date_accepted
  @date_accepted
end

#date_available ⇒ Object

Returns the value of attribute date_available.



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# File 'lib/bolognese/metadata.rb', line 64

def date_available
  @date_available
end

#date_collected ⇒ Object

Returns the value of attribute date_collected.



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# File 'lib/bolognese/metadata.rb', line 64

def date_collected
  @date_collected
end

#date_copyrighted ⇒ Object

Returns the value of attribute date_copyrighted.



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# File 'lib/bolognese/metadata.rb', line 64

def date_copyrighted
  @date_copyrighted
end

#date_created ⇒ Object

Returns the value of attribute date_created.



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# File 'lib/bolognese/metadata.rb', line 64

def date_created
  @date_created
end

#date_modified ⇒ Object

Returns the value of attribute date_modified.



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# File 'lib/bolognese/metadata.rb', line 64

def date_modified
  @date_modified
end

#date_registered ⇒ Object

Returns the value of attribute date_registered.



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# File 'lib/bolognese/metadata.rb', line 64

def date_registered
  @date_registered
end

#date_submitted ⇒ Object

Returns the value of attribute date_submitted.



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# File 'lib/bolognese/metadata.rb', line 64

def date_submitted
  @date_submitted
end

#date_updated ⇒ Object

Returns the value of attribute date_updated.



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# File 'lib/bolognese/metadata.rb', line 64

def date_updated
  @date_updated
end

#date_valid ⇒ Object

Returns the value of attribute date_valid.



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# File 'lib/bolognese/metadata.rb', line 64

def date_valid
  @date_valid
end

#description ⇒ Object

Returns the value of attribute description.



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# File 'lib/bolognese/metadata.rb', line 64

def description
  @description
end

#doc ⇒ Object (readonly)

Returns the value of attribute doc.



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# File 'lib/bolognese/metadata.rb', line 79

def doc
  @doc
end

#documents ⇒ Object

Returns the value of attribute documents.



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# File 'lib/bolognese/metadata.rb', line 64

def documents
  @documents
end

#doi ⇒ Object

Returns the value of attribute doi.



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# File 'lib/bolognese/metadata.rb', line 64

def doi
  @doi
end

#editor ⇒ Object

Returns the value of attribute editor.



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# File 'lib/bolognese/metadata.rb', line 64

def editor
  @editor
end

#errors ⇒ Object (readonly)

validate against DataCite schema, unless there are already errors in the reader



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# File 'lib/bolognese/metadata.rb', line 146

def errors
  @errors
end

#first_page ⇒ Object

Returns the value of attribute first_page.



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# File 'lib/bolognese/metadata.rb', line 64

def first_page
  @first_page
end

#format ⇒ Object

Returns the value of attribute format.



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# File 'lib/bolognese/metadata.rb', line 64

def format
  @format
end

#from ⇒ Object (readonly)

Returns the value of attribute from.



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# File 'lib/bolognese/metadata.rb', line 79

def from
  @from
end

#funding ⇒ Object

Returns the value of attribute funding.



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# File 'lib/bolognese/metadata.rb', line 64

def funding
  @funding
end

#has_metadata ⇒ Object

Returns the value of attribute has_metadata.



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# File 'lib/bolognese/metadata.rb', line 64

def has_metadata
  @has_metadata
end

#has_part ⇒ Object

Returns the value of attribute has_part.



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# File 'lib/bolognese/metadata.rb', line 64

def has_part
  @has_part
end

#id ⇒ Object (readonly)

Returns the value of attribute id.



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# File 'lib/bolognese/metadata.rb', line 79

def id
  @id
end

#is_cited_by ⇒ Object

Returns the value of attribute is_cited_by.



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# File 'lib/bolognese/metadata.rb', line 64

def is_cited_by
  @is_cited_by
end

#is_compiled_by ⇒ Object

Returns the value of attribute is_compiled_by.



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# File 'lib/bolognese/metadata.rb', line 64

def is_compiled_by
  @is_compiled_by
end

#is_continued_by ⇒ Object

Returns the value of attribute is_continued_by.



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# File 'lib/bolognese/metadata.rb', line 64

def is_continued_by
  @is_continued_by
end

#is_derived_from ⇒ Object

Returns the value of attribute is_derived_from.



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# File 'lib/bolognese/metadata.rb', line 64

def is_derived_from
  @is_derived_from
end

#is_documented_by ⇒ Object

Returns the value of attribute is_documented_by.



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# File 'lib/bolognese/metadata.rb', line 64

def is_documented_by
  @is_documented_by
end

#is_metadata_for ⇒ Object

Returns the value of attribute is_metadata_for.



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# File 'lib/bolognese/metadata.rb', line 64

def is_metadata_for
  @is_metadata_for
end

#is_new_version_of ⇒ Object

Returns the value of attribute is_new_version_of.



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# File 'lib/bolognese/metadata.rb', line 64

def is_new_version_of
  @is_new_version_of
end

#is_original_form_of ⇒ Object

Returns the value of attribute is_original_form_of.



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# File 'lib/bolognese/metadata.rb', line 64

def is_original_form_of
  @is_original_form_of
end

#is_previous_version_of ⇒ Object

Returns the value of attribute is_previous_version_of.



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# File 'lib/bolognese/metadata.rb', line 64

def is_previous_version_of
  @is_previous_version_of
end

#is_referenced_by ⇒ Object

Returns the value of attribute is_referenced_by.



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# File 'lib/bolognese/metadata.rb', line 64

def is_referenced_by
  @is_referenced_by
end

#is_reviewed_by ⇒ Object

Returns the value of attribute is_reviewed_by.



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# File 'lib/bolognese/metadata.rb', line 64

def is_reviewed_by
  @is_reviewed_by
end

#is_source_of ⇒ Object

Returns the value of attribute is_source_of.



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# File 'lib/bolognese/metadata.rb', line 64

def is_source_of
  @is_source_of
end

#is_supplement_to ⇒ Object

Returns the value of attribute is_supplement_to.



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# File 'lib/bolognese/metadata.rb', line 64

def is_supplement_to
  @is_supplement_to
end

#is_supplemented_by ⇒ Object

Returns the value of attribute is_supplemented_by.



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# File 'lib/bolognese/metadata.rb', line 64

def is_supplemented_by
  @is_supplemented_by
end

#is_variant_form_of ⇒ Object

Returns the value of attribute is_variant_form_of.



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# File 'lib/bolognese/metadata.rb', line 64

def is_variant_form_of
  @is_variant_form_of
end

#issue ⇒ Object

Returns the value of attribute issue.



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# File 'lib/bolognese/metadata.rb', line 64

def issue
  @issue
end

#journal ⇒ Object

Returns the value of attribute journal.



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# File 'lib/bolognese/metadata.rb', line 64

def journal
  @journal
end

#keywords ⇒ Object

Returns the value of attribute keywords.



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# File 'lib/bolognese/metadata.rb', line 64

def keywords
  @keywords
end

#language ⇒ Object

Returns the value of attribute language.



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# File 'lib/bolognese/metadata.rb', line 64

def language
  @language
end

#last_page ⇒ Object

Returns the value of attribute last_page.



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# File 'lib/bolognese/metadata.rb', line 64

def last_page
  @last_page
end

#license ⇒ Object

Returns the value of attribute license.



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# File 'lib/bolognese/metadata.rb', line 64

def license
  @license
end

#locale ⇒ Object

Returns the value of attribute locale.



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# File 'lib/bolognese/metadata.rb', line 64

def locale
  @locale
end

#metadata ⇒ Object (readonly)

Returns the value of attribute metadata.



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# File 'lib/bolognese/metadata.rb', line 79

def metadata
  @metadata
end

#name_detector ⇒ Object (readonly)

recognize given name. Can be loaded once as ::NameDetector, e.g. in a Rails initializer



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# File 'lib/bolognese/metadata.rb', line 375

def name_detector
  @name_detector
end

#page_end ⇒ Object (readonly)

Returns the value of attribute page_end.



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# File 'lib/bolognese/metadata.rb', line 79

def page_end
  @page_end
end

#page_start ⇒ Object (readonly)

Returns the value of attribute page_start.



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# File 'lib/bolognese/metadata.rb', line 79

def page_start
  @page_start
end

#provider ⇒ Object (readonly)

Returns the value of attribute provider.



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# File 'lib/bolognese/metadata.rb', line 79

def provider
  @provider
end

#provider_id ⇒ Object

Returns the value of attribute provider_id.



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# File 'lib/bolognese/metadata.rb', line 64

def provider_id
  @provider_id
end

#publisher ⇒ Object

Returns the value of attribute publisher.



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# File 'lib/bolognese/metadata.rb', line 64

def publisher
  @publisher
end

#raw ⇒ Object (readonly)

Returns the value of attribute raw.



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# File 'lib/bolognese/metadata.rb', line 79

def raw
  @raw
end

#references ⇒ Object

Returns the value of attribute references.



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# File 'lib/bolognese/metadata.rb', line 64

def references
  @references
end

#related_identifier ⇒ Object (readonly)

Returns the value of attribute related_identifier.



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# File 'lib/bolognese/metadata.rb', line 79

def related_identifier
  @related_identifier
end

#reverse ⇒ Object (readonly)

Returns the value of attribute reverse.



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# File 'lib/bolognese/metadata.rb', line 79

def reverse
  @reverse
end

#reviews ⇒ Object

Returns the value of attribute reviews.



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# File 'lib/bolognese/metadata.rb', line 64

def reviews
  @reviews
end

#ris_type ⇒ Object

Returns the value of attribute ris_type.



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# File 'lib/bolognese/metadata.rb', line 64

def ris_type
  @ris_type
end

#same_as ⇒ Object

Returns the value of attribute same_as.



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# File 'lib/bolognese/metadata.rb', line 64

def same_as
  @same_as
end

#schema_version ⇒ Object

Returns the value of attribute schema_version.



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# File 'lib/bolognese/metadata.rb', line 64

def schema_version
  @schema_version
end

#should_passthru ⇒ Object (readonly)

Returns the value of attribute should_passthru.



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# File 'lib/bolognese/metadata.rb', line 79

def should_passthru
  @should_passthru
end

#spatial_coverage ⇒ Object

Returns the value of attribute spatial_coverage.



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# File 'lib/bolognese/metadata.rb', line 64

def spatial_coverage
  @spatial_coverage
end

#state ⇒ Object

Returns the value of attribute state.



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# File 'lib/bolognese/metadata.rb', line 64

def state
  @state
end

#style ⇒ Object

Returns the value of attribute style.



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# File 'lib/bolognese/metadata.rb', line 64

def style
  @style
end

#title ⇒ Object

Returns the value of attribute title.



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# File 'lib/bolognese/metadata.rb', line 64

def title
  @title
end

#type ⇒ Object

Returns the value of attribute type.



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# File 'lib/bolognese/metadata.rb', line 64

def type
  @type
end

#url ⇒ Object

Returns the value of attribute url.



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# File 'lib/bolognese/metadata.rb', line 64

def url
  @url
end

#version ⇒ Object

Returns the value of attribute version.



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# File 'lib/bolognese/metadata.rb', line 64

def version
  @version
end

#volume ⇒ Object

Returns the value of attribute volume.



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# File 'lib/bolognese/metadata.rb', line 64

def volume
  @volume
end

Instance Method Details

#container_title ⇒ Object 



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# File 'lib/bolognese/metadata.rb', line 383

def container_title
  Array.wrap(is_part_of).length == 1 ? is_part_of.to_h.fetch("title", nil) : nil
end

#date_published ⇒ Object 



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# File 'lib/bolognese/metadata.rb', line 244

def date_published
  @date_published ||= metadata.fetch("date_published", nil)
end

#descriptions ⇒ Object 



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# File 'lib/bolognese/metadata.rb', line 387

def descriptions
  Array.wrap(description)
end

#exists? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bolognese/metadata.rb', line 137

def exists?
  metadata.fetch("id", nil).present?
end

#graph ⇒ Object 



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# File 'lib/bolognese/metadata.rb', line 396

def graph
  RDF::Graph.new << JSON::LD::API.toRdf(schema_hsh)
end

#is_identical_to ⇒ Object 



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# File 'lib/bolognese/metadata.rb', line 312

def is_identical_to
  metadata.fetch("is_identical_to", nil)
end

#is_part_of ⇒ Object 



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# File 'lib/bolognese/metadata.rb', line 316

def is_part_of
  metadata.fetch("is_part_of", nil)
end

#publication_year ⇒ Object 



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# File 'lib/bolognese/metadata.rb', line 379

def publication_year
  date_published.present? ? date_published[0..3].to_i.presence : nil
end

#related_identifier_hsh(relation_type) ⇒ Object 



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# File 'lib/bolognese/metadata.rb', line 364

def related_identifier_hsh(relation_type)
  Array.wrap(send(relation_type)).select { |r| r["id"] || r["issn"] }
    .map { |r| r.merge("relationType" => relation_type.camelize) }
end

#resource_type_general ⇒ Object 



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# File 'lib/bolognese/metadata.rb', line 176

def resource_type_general
  @resource_type_general ||= metadata.fetch("resource_type_general", nil)
end

#valid? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bolognese/metadata.rb', line 141

def valid?
  exists? && errors.nil?
end