Module: CagnutPicard

Defined in:
lib/cagnut_picard.rb,
lib/cagnut_picard/base.rb,
lib/cagnut_picard/util.rb,
lib/cagnut_picard/version.rb,
lib/cagnut_picard/check_tools.rb,
lib/cagnut_picard/configuration.rb,
lib/cagnut_picard/functions/markdup.rb,
lib/cagnut_picard/functions/sort_sam.rb,
lib/cagnut_picard/functions/build_bam_index.rb,
lib/cagnut_picard/functions/mean_quality_by_cycle.rb,
lib/cagnut_picard/functions/collect_gc_bias_metrics.rb,
lib/cagnut_picard/functions/collect_multiple_metrics.rb,
lib/cagnut_picard/functions/add_or_replace_readgroups.rb,
lib/cagnut_picard/functions/quality_score_distribution.rb,
lib/cagnut_picard/functions/collect_insert_size_metrics.rb

Defined Under Namespace

Modules: CheckTools Classes: AddOrReplaceReadGroups, Base, BuildBamIndex, CollectGcBiasMetrics, CollectInsertSizeMetrics, CollectMultipleMetrics, Configuration, Markdup, MeanQualityByCycle, QualityScoreDistribution, SortSam, Util

Constant Summary collapse

VERSION = 
"0.3.2"

Class Method Summary collapse

Class Method Details

.config ⇒ Object 



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# File 'lib/cagnut_picard.rb', line 5

def config
  @config ||= begin
    CagnutPicard::Configuration.load(Cagnut::Configuration.config, Cagnut::Configuration.params['picard'])
    CagnutPicard::Configuration.instance
  end
end