Class: CagnutSamtools::Base

Inherits:
Object
  • Object
show all
Defined in:
lib/cagnut_samtools/base.rb

Instance Method Summary collapse

Instance Method Details

#do_flag_stat(dirs, order, previous_job_id, input = nil) ⇒ Object 



18
19
20
21
 
# File 'lib/cagnut_samtools/base.rb', line 18

def do_flag_stat dirs, order, previous_job_id, input = nil
  opts = { input: input, dirs: dirs, order: order  }
  CagnutSamtools::DoFlagStat.new(opts).run previous_job_id
end

#merge_bam(dirs, order, previous_job_id, input = nil) ⇒ Object 



8
9
10
11
 
# File 'lib/cagnut_samtools/base.rb', line 8

def merge_bam dirs, order, previous_job_id, input = nil
  opts = { input: input, dirs: dirs, order: order }
  CagnutSamtools::MergeBam.new(opts).run previous_job_id
end

#mg_bam_soft_link(dirs, order, previous_job_id, input = nil) ⇒ Object 



13
14
15
16
 
# File 'lib/cagnut_samtools/base.rb', line 13

def mg_bam_soft_link dirs, order, previous_job_id, input = nil
  opts = { input: input, dirs: dirs, order: order  }
  CagnutSamtools::MgBamSoftLink.new(opts).run previous_job_id
end