Class: CagnutSnpeff::Util

Inherits:

Object

• Object
• CagnutSnpeff::Util

Defined in:

lib/cagnut_snpeff/util.rb

Instance Attribute Summary

• #snpeff ⇒ Object

  Returns the value of attribute snpeff.

Instance Method Summary

• #initialize ⇒ Util constructor

  A new instance of Util.

• #snp_annotation(dirs, order = 1, previous_job_id = nil, filename = nil) ⇒ Object

Constructor Details

#initialize ⇒ Util

Returns a new instance of Util.

# File 'lib/cagnut_snpeff/util.rb', line 5

def initialize
  @snpeff = CagnutSnpeff::Base.new
end

Instance Attribute Details

#snpeff ⇒ Object

Returns the value of attribute snpeff.

# File 'lib/cagnut_snpeff/util.rb', line 3

def snpeff
  @snpeff
end

Instance Method Details

#snp_annotation(dirs, order = 1, previous_job_id = nil, filename = nil) ⇒ Object

# File 'lib/cagnut_snpeff/util.rb', line 9

def snp_annotation dirs, order=1, previous_job_id=nil, filename=nil
  job_name = snpeff.snp_annotation dirs, order, previous_job_id, filename
  [job_name, order]
end