Class: Cheminee::DefaultApi
- Inherits:
-
Object
- Object
- Cheminee::DefaultApi
- Defined in:
- lib/cheminee/api/default_api.rb
Instance Attribute Summary collapse
-
#api_client ⇒ Object
Returns the value of attribute api_client.
Instance Method Summary collapse
-
#initialize(api_client = ApiClient.default) ⇒ DefaultApi
constructor
A new instance of DefaultApi.
-
#v1_convert_mol_block_to_smiles_post(sanitize, mol_block, opts = {}) ⇒ Array<ConvertedSmiles>
Convert a list of SMILES to molblocks.
-
#v1_convert_mol_block_to_smiles_post_with_http_info(sanitize, mol_block, opts = {}) ⇒ Array<(Array<ConvertedSmiles>, Integer, Hash)>
Convert a list of SMILES to molblocks.
-
#v1_convert_smiles_to_mol_block_post(smiles, opts = {}) ⇒ Array<ConvertedMolBlock>
Convert a list of molblocks to SMILES.
-
#v1_convert_smiles_to_mol_block_post_with_http_info(smiles, opts = {}) ⇒ Array<(Array<ConvertedMolBlock>, Integer, Hash)>
Convert a list of molblocks to SMILES.
-
#v1_indexes_get(opts = {}) ⇒ Array<IndexMeta>
List indexes.
-
#v1_indexes_get_with_http_info(opts = {}) ⇒ Array<(Array<IndexMeta>, Integer, Hash)>
List indexes.
-
#v1_indexes_index_bulk_delete_delete(index, bulk_request, opts = {}) ⇒ DeleteIndexBulkResponseOk
Delete a list of smiles (after standardization) from an index.
-
#v1_indexes_index_bulk_delete_delete_with_http_info(index, bulk_request, opts = {}) ⇒ Array<(DeleteIndexBulkResponseOk, Integer, Hash)>
Delete a list of smiles (after standardization) from an index.
-
#v1_indexes_index_bulk_index_post(index, bulk_request, opts = {}) ⇒ PostIndexBulkResponseOk
Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable.
-
#v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts = {}) ⇒ Array<(PostIndexBulkResponseOk, Integer, Hash)>
Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable.
-
#v1_indexes_index_delete(index, opts = {}) ⇒ IndexMeta
Delete an index.
-
#v1_indexes_index_delete_with_http_info(index, opts = {}) ⇒ Array<(IndexMeta, Integer, Hash)>
Delete an index.
-
#v1_indexes_index_get(index, opts = {}) ⇒ IndexSchema
Get extended information about an index.
-
#v1_indexes_index_get_with_http_info(index, opts = {}) ⇒ Array<(IndexSchema, Integer, Hash)>
Get extended information about an index.
-
#v1_indexes_index_merge_post(index, opts = {}) ⇒ String
Merge segments inside the index.
-
#v1_indexes_index_merge_post_with_http_info(index, opts = {}) ⇒ Array<(String, Integer, Hash)>
Merge segments inside the index.
-
#v1_indexes_index_post(index, schema, opts = {}) ⇒ IndexMeta
Create an index.
-
#v1_indexes_index_post_with_http_info(index, schema, opts = {}) ⇒ Array<(IndexMeta, Integer, Hash)>
Create an index.
-
#v1_indexes_index_search_basic_get(index, query, opts = {}) ⇒ Array<QuerySearchHit>
Perform basic query search against index.
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#v1_indexes_index_search_basic_get_with_http_info(index, query, opts = {}) ⇒ Array<(Array<QuerySearchHit>, Integer, Hash)>
Perform basic query search against index.
-
#v1_indexes_index_search_identity_get(index, smiles, opts = {}) ⇒ Array<StructureSearchHit>
Perform identity search (i.e. exact match) against index.
-
#v1_indexes_index_search_identity_get_with_http_info(index, smiles, opts = {}) ⇒ Array<(Array<StructureSearchHit>, Integer, Hash)>
Perform identity search (i.e. exact match) against index.
-
#v1_indexes_index_search_similarity_get(index, smiles, opts = {}) ⇒ Array<StructureSearchHit>
Perform similarity search against index.
-
#v1_indexes_index_search_similarity_get_with_http_info(index, smiles, opts = {}) ⇒ Array<(Array<StructureSearchHit>, Integer, Hash)>
Perform similarity search against index.
-
#v1_indexes_index_search_substructure_get(index, smiles, opts = {}) ⇒ Array<StructureSearchHit>
Perform substructure search against index.
-
#v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts = {}) ⇒ Array<(Array<StructureSearchHit>, Integer, Hash)>
Perform substructure search against index.
-
#v1_indexes_index_search_superstructure_get(index, smiles, opts = {}) ⇒ Array<StructureSearchHit>
Perform superstructure search against index.
-
#v1_indexes_index_search_superstructure_get_with_http_info(index, smiles, opts = {}) ⇒ Array<(Array<StructureSearchHit>, Integer, Hash)>
Perform superstructure search against index.
-
#v1_schemas_get(opts = {}) ⇒ Array<Schema>
List schemas available for creating indexes.
-
#v1_schemas_get_with_http_info(opts = {}) ⇒ Array<(Array<Schema>, Integer, Hash)>
List schemas available for creating indexes.
-
#v1_standardize_post(smiles, opts = {}) ⇒ Array<StandardizedSmiles>
Pass a list of SMILES through fragment_parent, uncharger, and canonicalization routines.
-
#v1_standardize_post_with_http_info(smiles, opts = {}) ⇒ Array<(Array<StandardizedSmiles>, Integer, Hash)>
Pass a list of SMILES through fragment_parent, uncharger, and canonicalization routines.
Constructor Details
#initialize(api_client = ApiClient.default) ⇒ DefaultApi
Returns a new instance of DefaultApi.
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# File 'lib/cheminee/api/default_api.rb', line 19 def initialize(api_client = ApiClient.default) @api_client = api_client end |
Instance Attribute Details
#api_client ⇒ Object
Returns the value of attribute api_client.
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# File 'lib/cheminee/api/default_api.rb', line 17 def api_client @api_client end |
Instance Method Details
#v1_convert_mol_block_to_smiles_post(sanitize, mol_block, opts = {}) ⇒ Array<ConvertedSmiles>
Convert a list of SMILES to molblocks
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# File 'lib/cheminee/api/default_api.rb', line 27 def v1_convert_mol_block_to_smiles_post(sanitize, mol_block, opts = {}) data, _status_code, _headers = v1_convert_mol_block_to_smiles_post_with_http_info(sanitize, mol_block, opts) data end |
#v1_convert_mol_block_to_smiles_post_with_http_info(sanitize, mol_block, opts = {}) ⇒ Array<(Array<ConvertedSmiles>, Integer, Hash)>
Convert a list of SMILES to molblocks
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# File 'lib/cheminee/api/default_api.rb', line 37 def v1_convert_mol_block_to_smiles_post_with_http_info(sanitize, mol_block, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_convert_mol_block_to_smiles_post ...' end # verify the required parameter 'sanitize' is set if @api_client.config.client_side_validation && sanitize.nil? fail ArgumentError, "Missing the required parameter 'sanitize' when calling DefaultApi.v1_convert_mol_block_to_smiles_post" end # verify the required parameter 'mol_block' is set if @api_client.config.client_side_validation && mol_block.nil? fail ArgumentError, "Missing the required parameter 'mol_block' when calling DefaultApi.v1_convert_mol_block_to_smiles_post" end # resource path local_var_path = '/v1/convert/mol_block_to_smiles' # query parameters query_params = opts[:query_params] || {} query_params[:'sanitize'] = sanitize # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # HTTP header 'Content-Type' content_type = @api_client.select_header_content_type(['application/json; charset=utf-8']) if !content_type.nil? header_params['Content-Type'] = content_type end # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] || @api_client.object_to_http_body(mol_block) # return_type return_type = opts[:debug_return_type] || 'Array<ConvertedSmiles>' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_convert_mol_block_to_smiles_post", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:POST, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_convert_mol_block_to_smiles_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_convert_smiles_to_mol_block_post(smiles, opts = {}) ⇒ Array<ConvertedMolBlock>
Convert a list of molblocks to SMILES
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# File 'lib/cheminee/api/default_api.rb', line 99 def v1_convert_smiles_to_mol_block_post(smiles, opts = {}) data, _status_code, _headers = v1_convert_smiles_to_mol_block_post_with_http_info(smiles, opts) data end |
#v1_convert_smiles_to_mol_block_post_with_http_info(smiles, opts = {}) ⇒ Array<(Array<ConvertedMolBlock>, Integer, Hash)>
Convert a list of molblocks to SMILES
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# File 'lib/cheminee/api/default_api.rb', line 108 def v1_convert_smiles_to_mol_block_post_with_http_info(smiles, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_convert_smiles_to_mol_block_post ...' end # verify the required parameter 'smiles' is set if @api_client.config.client_side_validation && smiles.nil? fail ArgumentError, "Missing the required parameter 'smiles' when calling DefaultApi.v1_convert_smiles_to_mol_block_post" end # resource path local_var_path = '/v1/convert/smiles_to_mol_block' # query parameters query_params = opts[:query_params] || {} # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # HTTP header 'Content-Type' content_type = @api_client.select_header_content_type(['application/json; charset=utf-8']) if !content_type.nil? header_params['Content-Type'] = content_type end # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] || @api_client.object_to_http_body(smiles) # return_type return_type = opts[:debug_return_type] || 'Array<ConvertedMolBlock>' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_convert_smiles_to_mol_block_post", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:POST, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_convert_smiles_to_mol_block_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_get(opts = {}) ⇒ Array<IndexMeta>
List indexes
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# File 'lib/cheminee/api/default_api.rb', line 164 def v1_indexes_get(opts = {}) data, _status_code, _headers = v1_indexes_get_with_http_info(opts) data end |
#v1_indexes_get_with_http_info(opts = {}) ⇒ Array<(Array<IndexMeta>, Integer, Hash)>
List indexes
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# File 'lib/cheminee/api/default_api.rb', line 172 def v1_indexes_get_with_http_info(opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_get ...' end # resource path local_var_path = '/v1/indexes' # query parameters query_params = opts[:query_params] || {} # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'Array<IndexMeta>' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_get", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:GET, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_bulk_delete_delete(index, bulk_request, opts = {}) ⇒ DeleteIndexBulkResponseOk
Delete a list of smiles (after standardization) from an index
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# File 'lib/cheminee/api/default_api.rb', line 221 def v1_indexes_index_bulk_delete_delete(index, bulk_request, opts = {}) data, _status_code, _headers = v1_indexes_index_bulk_delete_delete_with_http_info(index, bulk_request, opts) data end |
#v1_indexes_index_bulk_delete_delete_with_http_info(index, bulk_request, opts = {}) ⇒ Array<(DeleteIndexBulkResponseOk, Integer, Hash)>
Delete a list of smiles (after standardization) from an index
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# File 'lib/cheminee/api/default_api.rb', line 231 def v1_indexes_index_bulk_delete_delete_with_http_info(index, bulk_request, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_bulk_delete_delete ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_bulk_delete_delete" end # verify the required parameter 'bulk_request' is set if @api_client.config.client_side_validation && bulk_request.nil? fail ArgumentError, "Missing the required parameter 'bulk_request' when calling DefaultApi.v1_indexes_index_bulk_delete_delete" end # resource path local_var_path = '/v1/indexes/{index}/bulk_delete'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # HTTP header 'Content-Type' content_type = @api_client.select_header_content_type(['application/json; charset=utf-8']) if !content_type.nil? header_params['Content-Type'] = content_type end # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] || @api_client.object_to_http_body(bulk_request) # return_type return_type = opts[:debug_return_type] || 'DeleteIndexBulkResponseOk' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_bulk_delete_delete", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:DELETE, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_bulk_delete_delete\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_bulk_index_post(index, bulk_request, opts = {}) ⇒ PostIndexBulkResponseOk
Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable
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# File 'lib/cheminee/api/default_api.rb', line 293 def v1_indexes_index_bulk_index_post(index, bulk_request, opts = {}) data, _status_code, _headers = v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts) data end |
#v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts = {}) ⇒ Array<(PostIndexBulkResponseOk, Integer, Hash)>
Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable
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# File 'lib/cheminee/api/default_api.rb', line 303 def v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_bulk_index_post ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_bulk_index_post" end # verify the required parameter 'bulk_request' is set if @api_client.config.client_side_validation && bulk_request.nil? fail ArgumentError, "Missing the required parameter 'bulk_request' when calling DefaultApi.v1_indexes_index_bulk_index_post" end # resource path local_var_path = '/v1/indexes/{index}/bulk_index'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # HTTP header 'Content-Type' content_type = @api_client.select_header_content_type(['application/json; charset=utf-8']) if !content_type.nil? header_params['Content-Type'] = content_type end # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] || @api_client.object_to_http_body(bulk_request) # return_type return_type = opts[:debug_return_type] || 'PostIndexBulkResponseOk' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_bulk_index_post", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:POST, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_bulk_index_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_delete(index, opts = {}) ⇒ IndexMeta
Delete an index
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# File 'lib/cheminee/api/default_api.rb', line 364 def v1_indexes_index_delete(index, opts = {}) data, _status_code, _headers = v1_indexes_index_delete_with_http_info(index, opts) data end |
#v1_indexes_index_delete_with_http_info(index, opts = {}) ⇒ Array<(IndexMeta, Integer, Hash)>
Delete an index
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# File 'lib/cheminee/api/default_api.rb', line 373 def v1_indexes_index_delete_with_http_info(index, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_delete ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_delete" end # resource path local_var_path = '/v1/indexes/{index}'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'IndexMeta' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_delete", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:DELETE, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_delete\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_get(index, opts = {}) ⇒ IndexSchema
Get extended information about an index
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# File 'lib/cheminee/api/default_api.rb', line 425 def v1_indexes_index_get(index, opts = {}) data, _status_code, _headers = v1_indexes_index_get_with_http_info(index, opts) data end |
#v1_indexes_index_get_with_http_info(index, opts = {}) ⇒ Array<(IndexSchema, Integer, Hash)>
Get extended information about an index
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# File 'lib/cheminee/api/default_api.rb', line 434 def v1_indexes_index_get_with_http_info(index, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_get ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_get" end # resource path local_var_path = '/v1/indexes/{index}'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'IndexSchema' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_get", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:GET, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_merge_post(index, opts = {}) ⇒ String
Merge segments inside the index
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# File 'lib/cheminee/api/default_api.rb', line 486 def v1_indexes_index_merge_post(index, opts = {}) data, _status_code, _headers = v1_indexes_index_merge_post_with_http_info(index, opts) data end |
#v1_indexes_index_merge_post_with_http_info(index, opts = {}) ⇒ Array<(String, Integer, Hash)>
Merge segments inside the index
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# File 'lib/cheminee/api/default_api.rb', line 495 def v1_indexes_index_merge_post_with_http_info(index, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_merge_post ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_merge_post" end # resource path local_var_path = '/v1/indexes/{index}/merge'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json', 'application/json; charset=utf-8']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'String' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_merge_post", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:POST, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_merge_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_post(index, schema, opts = {}) ⇒ IndexMeta
Create an index
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# File 'lib/cheminee/api/default_api.rb', line 548 def v1_indexes_index_post(index, schema, opts = {}) data, _status_code, _headers = v1_indexes_index_post_with_http_info(index, schema, opts) data end |
#v1_indexes_index_post_with_http_info(index, schema, opts = {}) ⇒ Array<(IndexMeta, Integer, Hash)>
Create an index
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# File 'lib/cheminee/api/default_api.rb', line 558 def v1_indexes_index_post_with_http_info(index, schema, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_post ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_post" end # verify the required parameter 'schema' is set if @api_client.config.client_side_validation && schema.nil? fail ArgumentError, "Missing the required parameter 'schema' when calling DefaultApi.v1_indexes_index_post" end # resource path local_var_path = '/v1/indexes/{index}'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} query_params[:'schema'] = schema # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'IndexMeta' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_post", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:POST, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_search_basic_get(index, query, opts = {}) ⇒ Array<QuerySearchHit>
Perform basic query search against index
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# File 'lib/cheminee/api/default_api.rb', line 617 def v1_indexes_index_search_basic_get(index, query, opts = {}) data, _status_code, _headers = v1_indexes_index_search_basic_get_with_http_info(index, query, opts) data end |
#v1_indexes_index_search_basic_get_with_http_info(index, query, opts = {}) ⇒ Array<(Array<QuerySearchHit>, Integer, Hash)>
Perform basic query search against index
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# File 'lib/cheminee/api/default_api.rb', line 628 def v1_indexes_index_search_basic_get_with_http_info(index, query, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_basic_get ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_basic_get" end # verify the required parameter 'query' is set if @api_client.config.client_side_validation && query.nil? fail ArgumentError, "Missing the required parameter 'query' when calling DefaultApi.v1_indexes_index_search_basic_get" end # resource path local_var_path = '/v1/indexes/{index}/search/basic'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} query_params[:'query'] = query query_params[:'limit'] = opts[:'limit'] if !opts[:'limit'].nil? # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'Array<QuerySearchHit>' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_search_basic_get", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:GET, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_search_basic_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_search_identity_get(index, smiles, opts = {}) ⇒ Array<StructureSearchHit>
Perform identity search (i.e. exact match) against index
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# File 'lib/cheminee/api/default_api.rb', line 690 def v1_indexes_index_search_identity_get(index, smiles, opts = {}) data, _status_code, _headers = v1_indexes_index_search_identity_get_with_http_info(index, smiles, opts) data end |
#v1_indexes_index_search_identity_get_with_http_info(index, smiles, opts = {}) ⇒ Array<(Array<StructureSearchHit>, Integer, Hash)>
Perform identity search (i.e. exact match) against index
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# File 'lib/cheminee/api/default_api.rb', line 703 def v1_indexes_index_search_identity_get_with_http_info(index, smiles, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_identity_get ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_identity_get" end # verify the required parameter 'smiles' is set if @api_client.config.client_side_validation && smiles.nil? fail ArgumentError, "Missing the required parameter 'smiles' when calling DefaultApi.v1_indexes_index_search_identity_get" end # resource path local_var_path = '/v1/indexes/{index}/search/identity'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} query_params[:'smiles'] = smiles query_params[:'use_chirality'] = opts[:'use_chirality'] if !opts[:'use_chirality'].nil? query_params[:'extra_query'] = opts[:'extra_query'] if !opts[:'extra_query'].nil? query_params[:'use_scaffolds'] = opts[:'use_scaffolds'] if !opts[:'use_scaffolds'].nil? # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'Array<StructureSearchHit>' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_search_identity_get", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:GET, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_search_identity_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_search_similarity_get(index, smiles, opts = {}) ⇒ Array<StructureSearchHit>
Perform similarity search against index
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# File 'lib/cheminee/api/default_api.rb', line 769 def v1_indexes_index_search_similarity_get(index, smiles, opts = {}) data, _status_code, _headers = v1_indexes_index_search_similarity_get_with_http_info(index, smiles, opts) data end |
#v1_indexes_index_search_similarity_get_with_http_info(index, smiles, opts = {}) ⇒ Array<(Array<StructureSearchHit>, Integer, Hash)>
Perform similarity search against index
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# File 'lib/cheminee/api/default_api.rb', line 784 def v1_indexes_index_search_similarity_get_with_http_info(index, smiles, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_similarity_get ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_similarity_get" end # verify the required parameter 'smiles' is set if @api_client.config.client_side_validation && smiles.nil? fail ArgumentError, "Missing the required parameter 'smiles' when calling DefaultApi.v1_indexes_index_search_similarity_get" end # resource path local_var_path = '/v1/indexes/{index}/search/similarity'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} query_params[:'smiles'] = smiles query_params[:'result_limit'] = opts[:'result_limit'] if !opts[:'result_limit'].nil? query_params[:'tautomer_limit'] = opts[:'tautomer_limit'] if !opts[:'tautomer_limit'].nil? query_params[:'search_percent_limit'] = opts[:'search_percent_limit'] if !opts[:'search_percent_limit'].nil? query_params[:'tanimoto_minimum'] = opts[:'tanimoto_minimum'] if !opts[:'tanimoto_minimum'].nil? query_params[:'extra_query'] = opts[:'extra_query'] if !opts[:'extra_query'].nil? # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'Array<StructureSearchHit>' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_search_similarity_get", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:GET, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_search_similarity_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_search_substructure_get(index, smiles, opts = {}) ⇒ Array<StructureSearchHit>
Perform substructure search against index
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# File 'lib/cheminee/api/default_api.rb', line 852 def v1_indexes_index_search_substructure_get(index, smiles, opts = {}) data, _status_code, _headers = v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts) data end |
#v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts = {}) ⇒ Array<(Array<StructureSearchHit>, Integer, Hash)>
Perform substructure search against index
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# File 'lib/cheminee/api/default_api.rb', line 867 def v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_substructure_get ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_substructure_get" end # verify the required parameter 'smiles' is set if @api_client.config.client_side_validation && smiles.nil? fail ArgumentError, "Missing the required parameter 'smiles' when calling DefaultApi.v1_indexes_index_search_substructure_get" end # resource path local_var_path = '/v1/indexes/{index}/search/substructure'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} query_params[:'smiles'] = smiles query_params[:'use_chirality'] = opts[:'use_chirality'] if !opts[:'use_chirality'].nil? query_params[:'result_limit'] = opts[:'result_limit'] if !opts[:'result_limit'].nil? query_params[:'tautomer_limit'] = opts[:'tautomer_limit'] if !opts[:'tautomer_limit'].nil? query_params[:'extra_query'] = opts[:'extra_query'] if !opts[:'extra_query'].nil? query_params[:'use_scaffolds'] = opts[:'use_scaffolds'] if !opts[:'use_scaffolds'].nil? # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'Array<StructureSearchHit>' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_search_substructure_get", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:GET, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_search_substructure_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_indexes_index_search_superstructure_get(index, smiles, opts = {}) ⇒ Array<StructureSearchHit>
Perform superstructure search against index
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# File 'lib/cheminee/api/default_api.rb', line 935 def v1_indexes_index_search_superstructure_get(index, smiles, opts = {}) data, _status_code, _headers = v1_indexes_index_search_superstructure_get_with_http_info(index, smiles, opts) data end |
#v1_indexes_index_search_superstructure_get_with_http_info(index, smiles, opts = {}) ⇒ Array<(Array<StructureSearchHit>, Integer, Hash)>
Perform superstructure search against index
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# File 'lib/cheminee/api/default_api.rb', line 950 def v1_indexes_index_search_superstructure_get_with_http_info(index, smiles, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_superstructure_get ...' end # verify the required parameter 'index' is set if @api_client.config.client_side_validation && index.nil? fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_superstructure_get" end # verify the required parameter 'smiles' is set if @api_client.config.client_side_validation && smiles.nil? fail ArgumentError, "Missing the required parameter 'smiles' when calling DefaultApi.v1_indexes_index_search_superstructure_get" end # resource path local_var_path = '/v1/indexes/{index}/search/superstructure'.sub('{' + 'index' + '}', CGI.escape(index.to_s)) # query parameters query_params = opts[:query_params] || {} query_params[:'smiles'] = smiles query_params[:'use_chirality'] = opts[:'use_chirality'] if !opts[:'use_chirality'].nil? query_params[:'result_limit'] = opts[:'result_limit'] if !opts[:'result_limit'].nil? query_params[:'tautomer_limit'] = opts[:'tautomer_limit'] if !opts[:'tautomer_limit'].nil? query_params[:'extra_query'] = opts[:'extra_query'] if !opts[:'extra_query'].nil? query_params[:'use_scaffolds'] = opts[:'use_scaffolds'] if !opts[:'use_scaffolds'].nil? # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'Array<StructureSearchHit>' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_indexes_index_search_superstructure_get", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:GET, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_search_superstructure_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_schemas_get(opts = {}) ⇒ Array<Schema>
List schemas available for creating indexes
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# File 'lib/cheminee/api/default_api.rb', line 1011 def v1_schemas_get(opts = {}) data, _status_code, _headers = v1_schemas_get_with_http_info(opts) data end |
#v1_schemas_get_with_http_info(opts = {}) ⇒ Array<(Array<Schema>, Integer, Hash)>
List schemas available for creating indexes
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# File 'lib/cheminee/api/default_api.rb', line 1019 def v1_schemas_get_with_http_info(opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_schemas_get ...' end # resource path local_var_path = '/v1/schemas' # query parameters query_params = opts[:query_params] || {} # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] # return_type return_type = opts[:debug_return_type] || 'Array<Schema>' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_schemas_get", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:GET, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_schemas_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |
#v1_standardize_post(smiles, opts = {}) ⇒ Array<StandardizedSmiles>
Pass a list of SMILES through fragment_parent, uncharger, and canonicalization routines
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# File 'lib/cheminee/api/default_api.rb', line 1068 def v1_standardize_post(smiles, opts = {}) data, _status_code, _headers = v1_standardize_post_with_http_info(smiles, opts) data end |
#v1_standardize_post_with_http_info(smiles, opts = {}) ⇒ Array<(Array<StandardizedSmiles>, Integer, Hash)>
Pass a list of SMILES through fragment_parent, uncharger, and canonicalization routines
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# File 'lib/cheminee/api/default_api.rb', line 1078 def v1_standardize_post_with_http_info(smiles, opts = {}) if @api_client.config.debugging @api_client.config.logger.debug 'Calling API: DefaultApi.v1_standardize_post ...' end # verify the required parameter 'smiles' is set if @api_client.config.client_side_validation && smiles.nil? fail ArgumentError, "Missing the required parameter 'smiles' when calling DefaultApi.v1_standardize_post" end # resource path local_var_path = '/v1/standardize' # query parameters query_params = opts[:query_params] || {} query_params[:'attempt_fix'] = opts[:'attempt_fix'] if !opts[:'attempt_fix'].nil? # header parameters header_params = opts[:header_params] || {} # HTTP header 'Accept' (if needed) header_params['Accept'] = @api_client.select_header_accept(['application/json']) unless header_params['Accept'] # HTTP header 'Content-Type' content_type = @api_client.select_header_content_type(['application/json; charset=utf-8']) if !content_type.nil? header_params['Content-Type'] = content_type end # form parameters form_params = opts[:form_params] || {} # http body (model) post_body = opts[:debug_body] || @api_client.object_to_http_body(smiles) # return_type return_type = opts[:debug_return_type] || 'Array<StandardizedSmiles>' # auth_names auth_names = opts[:debug_auth_names] || [] = opts.merge( :operation => :"DefaultApi.v1_standardize_post", :header_params => header_params, :query_params => query_params, :form_params => form_params, :body => post_body, :auth_names => auth_names, :return_type => return_type ) data, status_code, headers = @api_client.call_api(:POST, local_var_path, ) if @api_client.config.debugging @api_client.config.logger.debug "API called: DefaultApi#v1_standardize_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}" end return data, status_code, headers end |