Class: GenomeTables

Inherits:
Object
  • Object
show all
Defined in:
lib/copycats/genome.rb

Instance Method Summary collapse

Constructor Details

#initialize(genome) ⇒ GenomeTables

Returns a new instance of GenomeTables.



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# File 'lib/copycats/genome.rb', line 92

def initialize( genome )
  @genome = genome
end

Instance Method Details

#build ⇒ Object 



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# File 'lib/copycats/genome.rb', line 96

def build
  pos = 0
  buf = ""

  genes = @genome.genes

  TRAITS.each do |key, trait|
    gene       = genes[key]
    next  if gene.nil?   ## skip future_1, future_2, etc.

    buf << "#{trait[:name]} (Genes #{trait[:genes]})\n\n"

###
##   fix/todo: add stars for purity?
##     ****   - all traits the same
##     ***    - two same pairs of traits
##     **     - one pair of same traits

    buf << "|Gene  |Binary   |Kai  |Trait    |   |\n"
    buf << "|------|---------|-----|---------|---|\n"
    buf << "| #{pos} | #{Kai::BINARY[gene.d]} | #{gene.d} | **#{fmt_trait(trait[:kai][gene.d])}** | d |\n"; pos+=1
    buf << "| #{pos} | #{Kai::BINARY[gene.r1]} | #{gene.r1} | #{fmt_trait(trait[:kai][gene.r1])} | r1 |\n"; pos+=1
    buf << "| #{pos} | #{Kai::BINARY[gene.r2]} | #{gene.r2} | #{fmt_trait(trait[:kai][gene.r2])} | r2 |\n"; pos+=1
    buf << "| #{pos} | #{Kai::BINARY[gene.r3]} | #{gene.r3} | #{fmt_trait(trait[:kai][gene.r3])} | r3 |\n"; pos+=1
    buf << "\n"

    if key == :body    ## add legend for first entry
      buf << "d = dominant, r1 = 1st order recessive, r2 = 2nd order recessive, r3 = 3rd order recessive\n\n"
    end
  end

  buf
end

#fmt_trait(trait) ⇒ Object

helpers



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# File 'lib/copycats/genome.rb', line 133

def fmt_trait( trait )
  (trait.nil? || trait.empty?) ? '?' : trait
end