Class: ODDB::Import::Gkv

Inherits:
Importer show all
Defined in:
lib/oddb/import/gkv.rb

Instance Method Summary collapse

Methods inherited from Importer

#capitalize_all, #company_name, #utf8

Constructor Details

#initialize ⇒ Gkv

Returns a new instance of Gkv.



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# File 'lib/oddb/import/gkv.rb', line 46

def initialize
  super
  @assigned_companies = 0
  @assigned_equivalences = 0
  @confirmed_pzns = {}
  @count = 0
  @created = 0
  @created_companies = 0
  @created_products = 0
  @created_sequences = 0
  @created_substances = 0
  @deleted = 0
  @existing = 0
  @existing_companies = 0
  @existing_substances = 0
  @doubtful_pzns = []
  @missingname_uids = []  # UIDs of products which has no name
end

Instance Method Details

#download_latest(url, opts = {}, &block) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 64

def download_latest(url, opts={}, &block)
  opts = {:date => Date.today}.merge(opts)
  file = File.basename(url)
  pdf_dir = File.join(ODDB.config.var, 'pdf/gkv')
  FileUtils.mkdir_p(pdf_dir)
  dest = File.join(pdf_dir, file)
  archive = File.join(ODDB.config.var, 'pdf/gkv',
              sprintf("%s-%s", opts[:date].strftime("%Y.%m.%d"), file))
  content = open(url).read
  if(!File.exist?(dest) || content.size != File.size(dest))
    open(archive, 'w') { |local|
      local << content
    }
    open(archive, 'r', &block)
    open(dest, 'w') { |local|
      local << content
    }
  end
rescue StandardError => error
  ODDB.logger.error('Gkv') { error.message }
end

#import(fh, opts = {}) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 97

def import fh, opts={}
  parser = Rpdf2txt::Parser.new(fh.read, 'utf8')
  handler = GkvHandler.new method(:process_page)
  parser.extract_text handler
  postprocess
  report
end

#import_active_agent(sequence, row, offset) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 166

def import_active_agent(sequence, row, offset)
  name = row.at(offset)
  sane = sanitize_substance_name(name)
  composition = sequence.compositions.first
  dose = Drugs::Dose.new(row.at(offset + 1),
                         row.at(offset + 2))
  ## check for slightly different names
  if(composition \
    && (agent = composition.active_agents.find { |act|
      act.substance.name.all.any? { |sub|
        sane == sanitize_substance_name(sub)
      }
    }))
    agent.dose = dose
    save agent
    substance = agent.substance
    if(name && substance.name != name)
      substance.name.add_synonym(name) && save(substance)
    end
  elsif(substance = import_substance(name))
    ## for now: don't expect multiple compositions
    if(composition.nil?)
      composition = Drugs::Composition.new
      composition.sequence = sequence
      save composition
      save sequence
    end
    candidate_names = [ name[/^\S+/], name[/^[^-]+/] ]
    composition.active_agents.each { |agent|
      other = agent.substance.name.de
      if other == name[0,other.length]
        candidate_names.push other
      end
    }
    candidate_names.uniq!
    agent = nil
    if(agent = composition.active_agent(substance))
      agent.dose = dose
      save agent
    elsif(candidate_names.any? { |name|
      agent = composition.active_agent(name) } )
      previous = agent.chemical_equivalence
      if(previous && previous.substance == substance)
        previous.dose = dose
        save previous
      else
        previous.delete if(previous)
        chemical = Drugs::ActiveAgent.new(substance, dose)
        save chemical
        agent.chemical_equivalence = chemical
        save agent
      end
    else
      agent = Drugs::ActiveAgent.new(substance, dose)
      agent.composition = composition
    end
  end
end

#import_company(row) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 224

def import_company(row)
  if name = row.at(2)
    cname = company_name(name)
    company = Business::Company.find_by_name(cname)
    if(company)
      @existing_companies += 1
    else
      @created_companies += 1
      company = Business::Company.new
      company.name.de = cname
      save company
    end
    company
  end
end

#import_galenic_form(row) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 239

def import_galenic_form(row)
  Drugs::GalenicForm.find_by_description(:value   => row.at(7),
                                         :type    => "galenic_form",
                                         :country => 'DE')
end

#import_package(row) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 244

def import_package(row)
  pzn = row.at(1).to_i
  return if(pzn == 0)
  pzn = u(pzn.to_s)
  package = Drugs::Package.find_by_code(:type => 'cid',
                                        :value => pzn,
                                        :country => 'DE')
  @created_pzn = nil
  if(package.nil?)
    @created_pzn = pzn
    package = Drugs::Package.new
    package.add_code(Util::Code.new(:cid, pzn, 'DE'))
    part = Drugs::Part.new
    part.package = package
    save part
    product = import_product(package, row)
    package.sequence = import_sequence(product, package, row)
    # save(package) is called at the end of import_row
  end
  if(amount = row.at(9))
    import_price package, :public, amount.tr(',', '.').to_f
    if(efp = package._price_exfactory)
      import_price(package, :exfactory, efp.to_f)
    end
  end
  package
end

#import_price(package, type, amount) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 271

def import_price(package, type, amount)
  dotype = :"price_#{type}"
  # if this price has been edited manually we won't overwrite
  unless((data_origin = package.data_origin(dotype)) \
     && data_origin.to_s.include?('@'))
    if(price = package.price(type, 'DE'))
      if(price != amount)
        price.amount = amount
      end
    else
      price = Util::Money.new(amount, type, 'DE')
      package.add_price(price)
    end
    package.data_origins.store dotype, :gkv
  end
end

#import_product(package, row) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 287

def import_product(package, row)
  name = product_name(row)
  search = name.dup
  product = nil
  candidates = []
  until(product || search.empty? || candidates.size > 1)
    candidates = Drugs::Product.search_by_name(search)
    if(candidates.size == 1)
      product = candidates.first
      product.name.add_synonym(name) && save(product)
    end
    search.sub!(/(\s|^)\S*$/, '')
  end
  if(product.nil?)
    @created_products += 1
    product = Drugs::Product.new
    product.name.de = name
    save product
  end
  product
end

#import_row(row) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 104

def import_row(row)
  if row == :doubtful
    @doubtful_pzns.push @created_pzn if @created_pzn
    @created_pzn = nil
    return
  end
  @count += 1
  package = import_package(row)
  return if package.nil?
  @confirmed_pzns.store(package.code(:cid).value, true)
  if(code = package.code(:zuzahlungsbefreit))
    if(code.value)
      @existing += 1
    else
      @created += 1
    end
    code.value = true
  else
    @created += 1
    code = Util::Code.new(:zuzahlungsbefreit, true, 'DE')
    package.add_code(code)
  end
  sequence = package.sequence
  product = sequence.product if sequence
  part = package.parts.first
  mnum, qnum = row.at(6).to_s.split('X')
  if(qnum.nil?)
    mnum, qnum = qnum, mnum
  end
  sunit = row.at(7)
  if(sunit == "ml")
    dose = Drugs::Dose.new(qnum, sunit)
    if(part.quantity != dose || part.size != mnum)
      part.quantity = dose
      part.size = mnum
      part.unit = nil
      save part
    end
  else
    unit = Drugs::Unit.find_by_name(row.at(8))
    changed = false
    if(qnum && part.size != qnum)
      part.size = qnum
      changed = true
    end
    if(unit && part.unit != unit)
      part.unit = unit
      changed = true
    end
    save(part) if changed
  end
  if(product && (company = import_company(row)) && product.company != company)
    product.company = company
    save product
  end
  if sequence
    import_active_agent(sequence, row, 3)
    import_active_agent(sequence, row, 10)
    import_active_agent(sequence, row, 13)
  end
  save package
end

#import_sequence(product, package, row) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 308

def import_sequence(product, package, row)
  substances = []
  doses = []
  [3, 10, 13].each { |idx|
    if(name = row.at(idx))
      substances.push(import_substance(name))
      doses.push(Drugs::Dose.new(row.at(idx + 1),
                                 row.at(idx + 2)))
    end
  }
  galform = import_galenic_form(row)
  sequence = product.sequences.find { |seq|
    doses = seq.doses
    seq.galenic_forms == [galform] \
      && seq.substances == substances \
      && (doses.empty? || doses.inject { |a, b| a + b } == dose)
  }
  if(sequence.nil?)
    @created_sequences += 1
    sequence = Drugs::Sequence.new
    composition = Drugs::Composition.new
    substances.each_with_index { |sub, idx|
      act = Drugs::ActiveAgent.new(sub, doses.at(idx))
      act.composition = composition
    }
    composition.galenic_form = galform
    composition.sequence = sequence
    save composition
    sequence.product = product
    save sequence
  end
  sequence
end

#import_substance(substance_name) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 341

def import_substance(substance_name)
  if(substance_name)
    substance = Drugs::Substance.find_by_name(substance_name)
    if(substance)
      @existing_substances += 1
    else
      @created_substances += 1
      substance = Drugs::Substance.new
      substance.name.de = substance_name
      save substance
    end
    substance
  end
end

#latest_url(agent, opts = {}) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 85

def latest_url agent, opts={}
  host = 'https://www.gkv-spitzenverband.de'
  url = '/Befreiungsliste_Arzneimittel_Versicherte.gkvnet'
  page = agent.get host + url
  file_base_name = "Zuzahlungsbefreit"
  link = (page/'a').map{|tag| tag['href']}.grep(/#{file_base_name}/)
  if link.length == 1 and link.to_s.match(/\.pdf/)
    return host + link.to_s
  else
    return nil
  end
end

#postprocess ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 355

def postprocess
  Drugs::Package.search_by_code(:type => 'zuzahlungsbefreit',
                                :value => 'true',
                                :country => 'DE').each { |package|
    pzn = package.code(:cid).value
    unless(@confirmed_pzns.include?(pzn))
      @deleted += 1
      package.code(:zuzahlungsbefreit).value = false
      save package
    end
  } unless(@confirmed_pzns.empty?)
  Drugs::Product.all { |product|
    unless(product.company)
      unless(product.name.de)
        @missingname_uids.push product.odba_id
      else
        keys = product.name.de.split
        key = keys.pop
        if(key == 'Comp')
          key = keys.pop
        end
        company = Business::Company.find_by_name(key)
        if(company.nil?)
          companies = Business::Company.search_by_name(key)
          if(companies.size == 1)
            company = companies.pop
          end
        end
        if(company)
          @assigned_companies += 1
          product.company = company
          save product
        end
      end
    end
  }
  Drugs::Composition.all { |composition|
    next if(composition.active_agents.size < 2)
    composition.active_agents.dup.each { |agent|
      next unless composition.active_agents.include?(agent)
      name = agent.substance.name.de
      if(other = composition.active_agents.find { |candidate|
        candidate != agent \
          && candidate.substance.name.de[0,name.length] == name })
        qty = other.dose.qty
        if(qty > 0 && qty == qty.to_i && !other.chemical_equivalence)
          agent, other = other, agent
        end
        if(agent.chemical_equivalence)
          raise "multiple chemical equivalences in #{composition.parts.first.package.code(:cid)}"
        end
        @assigned_equivalences += 1
        composition.remove_active_agent(other)
        agent.chemical_equivalence = other
        save agent
        save other
        save composition
      end
    }
  }
end

#process_page(rows) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 456

def process_page rows
  rows.each do |row|
    import_row row
  end
end

#product_name(row) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 416

def product_name(row)
  if data = row.at(0)
    capitalize_all(data.gsub(/[^A-Z\s]/, '').gsub(/\s+/, ' ')).strip
  end
end

#report ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 421

def report
  doubtfuls = @doubtful_pzns.collect do |pzn|
    "http://de.oddb.org/de/drugs/package/pzn/#{pzn}"
  end
  missingnames = @missingname_uids.collect do |uid|
    "http://de.oddb.org/de/drugs/product/uid/#{uid}"
  end
  [
    sprintf("Imported %5i Zubef-Entries on %s:",
            @count, Date.today.strftime("%d.%m.%Y")),
    sprintf("Visited  %5i existing Zubef-Entries", @existing),
    sprintf("Visited  %5i existing Companies",
            @existing_companies),
    sprintf("Visited  %5i existing Substances",
            @existing_substances),
    sprintf("Created  %5i new Zubef-Entries", @created),
    sprintf("Created  %5i new Products", @created_products),
    sprintf("Created  %5i new Sequences", @created_sequences),
    sprintf("Created  %5i new Companies", @created_companies),
    sprintf("Created  %5i new Substances", @created_substances),
    sprintf("Assigned %5i Chemical Equivalences",
            @assigned_equivalences),
    sprintf("Assigned %5i Companies", @assigned_companies),
    sprintf("Created  %5i Incomplete Packages:", doubtfuls.size),
  ].concat(doubtfuls) +
  [
    sprintf("Created  %5i Product(s) without a name (missing product name):", missingnames.size),
  ].concat(missingnames)
end

#sanitize_substance_name(str) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 450

def sanitize_substance_name(str)
  str.to_s.downcase.gsub(/[^a-z]/, '')
end

#save(obj) ⇒ Object 



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# File 'lib/oddb/import/gkv.rb', line 453

def save(obj)
  obj.save
end