Class: Ensembl::Variation::PhenotypeFeature

Inherits:

ModelBase

• Object
• ActiveRecord::Base
• ConnectionPooledBase
• Connection
• ModelBase
• Ensembl::Variation::PhenotypeFeature

Defined in:

lib/ensembl/variation/activerecord.rb

Instance Method Summary

• #description ⇒ Object
• #odds_ratio ⇒ Object
• #p_value ⇒ Object
• #risk_allele ⇒ Object

  def variation Variation.find_by name: object_id end.

Methods included from PrimaryKeyOverrides

#primary_key

Methods included from TableNameOverrides

#table_name

Methods inherited from ConnectionPooledBase

connection

Instance Method Details

#description ⇒ Object

# File 'lib/ensembl/variation/activerecord.rb', line 268

def description
  phenotype.description
end

#odds_ratio ⇒ Object

# File 'lib/ensembl/variation/activerecord.rb', line 263

def odds_ratio
  pf=phenotype_feature_attribs.odds_ratios.first
  pf.value unless pf.nil?
end

#p_value ⇒ Object

# File 'lib/ensembl/variation/activerecord.rb', line 258

def p_value
  pf=phenotype_feature_attribs.p_values.first
  pf.value unless pf.nil?
end

#risk_allele ⇒ Object

def variation

Variation.find_by name: object_id

end

# File 'lib/ensembl/variation/activerecord.rb', line 253

def risk_allele
  pf=phenotype_feature_attribs.risk_alleles.first
  pf.value unless pf.nil?
end