Class: Circos::Chromosome

Inherits:
Hash
  • Object
show all
Defined in:
lib/feldtruby/visualization/circos.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(*args, &block) ⇒ Chromosome

Returns a new instance of Chromosome.



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# File 'lib/feldtruby/visualization/circos.rb', line 6

def initialize(*args, &block)
	super
	@bands = Hash.new
end

Instance Attribute Details

#bands ⇒ Object (readonly)

Returns the value of attribute bands.



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# File 'lib/feldtruby/visualization/circos.rb', line 5

def bands
  @bands
end

Instance Method Details

#dump_bands_to_circos(bandKeyOrder = nil) ⇒ Object 



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# File 'lib/feldtruby/visualization/circos.rb', line 14

def dump_bands_to_circos(bandKeyOrder = nil)
	bands.map {|b| b.dump_to_circos_data(bandKeyOrder)}.join("\n")
end

#dump_to_circos_data(keyOrder = nil) ⇒ Object 



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# File 'lib/feldtruby/visualization/circos.rb', line 10

def dump_to_circos_data(keyOrder = nil)
	keyOrder ||= self.keys.sort
	(name + keyOrder.map {|key| self[key]}).join(" ") + "\n"
end