Class: FHIR::Boot::Preprocess
- Inherits:
-
Object
- Object
- FHIR::Boot::Preprocess
- Defined in:
- lib/fhir_models/bootstrap/preprocess.rb
Class Method Summary collapse
- .pre_process_bundle(filename) ⇒ Object
- .pre_process_codesystem(hash) ⇒ Object
- .pre_process_codesystem_concept(hash) ⇒ Object
- .pre_process_schema(filename) ⇒ Object
- .pre_process_searchparam(hash) ⇒ Object
- .pre_process_structuredefinition(hash) ⇒ Object
- .pre_process_valueset(hash) ⇒ Object
- .remove_fhir_comments(hash) ⇒ Object
Class Method Details
.pre_process_bundle(filename) ⇒ Object
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# File 'lib/fhir_models/bootstrap/preprocess.rb', line 5 def self.pre_process_bundle(filename) # Read the file puts "Processing #{File.basename(filename)}..." start = File.size(filename) json = File.open(filename, 'r:UTF-8', &:read) hash = JSON.parse(json) # Remove entries that do not interest us: CompartmentDefinitions, OperationDefinitions, Conformance statements hash['entry'].select! do |entry| %w[StructureDefinition ValueSet CodeSystem SearchParameter].include? entry['resource']['resourceType'] end # Remove unnecessary elements from the hash hash['entry'].each do |entry| next unless entry['resource'] pre_process_structuredefinition(entry['resource']) if 'StructureDefinition' == entry['resource']['resourceType'] pre_process_valueset(entry['resource']) if 'ValueSet' == entry['resource']['resourceType'] pre_process_codesystem(entry['resource']) if 'CodeSystem' == entry['resource']['resourceType'] pre_process_searchparam(entry['resource']) if 'SearchParameter' == entry['resource']['resourceType'] remove_fhir_comments(entry['resource']) end # Output the post processed file f = File.open(filename, 'w:UTF-8') f.write(JSON.pretty_unparse(hash)) f.close finish = File.size(filename) puts " Removed #{(start - finish) / 1024} KB" if start != finish end |
.pre_process_codesystem(hash) ⇒ Object
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# File 'lib/fhir_models/bootstrap/preprocess.rb', line 64 def self.pre_process_codesystem(hash) # Remove large HTML narratives and unused content %w[meta text publisher contact description requirements].each { |key| hash.delete(key) } return unless hash['concept'] hash['concept'].each do |concept| pre_process_codesystem_concept(concept) end end |
.pre_process_codesystem_concept(hash) ⇒ Object
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# File 'lib/fhir_models/bootstrap/preprocess.rb', line 73 def self.pre_process_codesystem_concept(hash) %w[extension definition designation].each { |key| hash.delete(key) } return unless hash['concept'] hash['concept'].each do |concept| pre_process_codesystem_concept(concept) end end |
.pre_process_schema(filename) ⇒ Object
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# File 'lib/fhir_models/bootstrap/preprocess.rb', line 102 def self.pre_process_schema(filename) # Read the file puts "Processing #{File.basename(filename)}..." start = File.size(filename) raw = File.open(filename, 'r:UTF-8', &:read) # Remove annotations doc = Nokogiri::XML(raw) doc.root.add_namespace_definition('xs', 'http://www.w3.org/2001/XMLSchema') doc.search('//xs:annotation').each(&:remove) # Output the post processed file f = File.open(filename, 'w:UTF-8') f.write(doc.to_xml) f.close finish = File.size(filename) puts " Removed #{(start - finish) / 1024} KB" if start != finish end |
.pre_process_searchparam(hash) ⇒ Object
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# File 'lib/fhir_models/bootstrap/preprocess.rb', line 81 def self.pre_process_searchparam(hash) # Remove large HTML narratives and unused content %w[id url name date publisher contact description xpathUsage].each { |key| hash.delete(key) } end |
.pre_process_structuredefinition(hash) ⇒ Object
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# File 'lib/fhir_models/bootstrap/preprocess.rb', line 35 def self.pre_process_structuredefinition(hash) # Remove large HTML narratives and unused content %w[text publisher contact description requirements mapping].each { |key| hash.delete(key) } # Remove unused descriptions within the snapshot and differential elements %w[snapshot differential].each do |key| next unless hash[key] hash[key]['element'].each do |element| %w[short definition comments requirements alias mapping].each { |subkey| element.delete(subkey) } end end end |
.pre_process_valueset(hash) ⇒ Object
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# File 'lib/fhir_models/bootstrap/preprocess.rb', line 48 def self.pre_process_valueset(hash) # Remove large HTML narratives and unused content %w[meta text publisher contact description requirements].each { |key| hash.delete(key) } return unless hash['compose'] %w[include exclude].each do |key| next unless hash['compose'][key] hash['compose'][key].each do |element| next unless element['concept'] element['concept'].each do |concept| concept.delete('designation') end end end end |
.remove_fhir_comments(hash) ⇒ Object
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# File 'lib/fhir_models/bootstrap/preprocess.rb', line 86 def self.remove_fhir_comments(hash) hash.delete('fhir_comments') hash.each do |_key, value| if value.is_a?(Hash) remove_fhir_comments(value) elsif value.is_a?(Array) value.each do |v| remove_fhir_comments(v) if v.is_a?(Hash) end end end hash.keep_if do |_key, value| !value.is_a?(Hash) || !value.empty? end end |