Class: FHIR::MolecularSequence
- Defined in:
- lib/fhir_models/fhir/resources/MolecularSequence.rb
Defined Under Namespace
Classes: Quality, ReferenceSeq, Repository, StructureVariant, Variant
Constant Summary collapse
- SEARCH_PARAMS =
['chromosome', 'identifier', 'patient', 'referenceseqid', 'type', 'variant-end', 'variant-start', 'window-end', 'window-start']
- METADATA =
{ 'id' => {'type'=>'id', 'path'=>'MolecularSequence.id', 'min'=>0, 'max'=>1}, 'meta' => {'type'=>'Meta', 'path'=>'MolecularSequence.meta', 'min'=>0, 'max'=>1}, 'implicitRules' => {'type'=>'uri', 'path'=>'MolecularSequence.implicitRules', 'min'=>0, 'max'=>1}, 'language' => {'valid_codes'=>{'urn:ietf:bcp:47'=>['ar', 'bn', 'cs', 'da', 'de', 'de-AT', 'de-CH', 'de-DE', 'el', 'en', 'en-AU', 'en-CA', 'en-GB', 'en-IN', 'en-NZ', 'en-SG', 'en-US', 'es', 'es-AR', 'es-ES', 'es-UY', 'fi', 'fr', 'fr-BE', 'fr-CH', 'fr-FR', 'fy', 'fy-NL', 'hi', 'hr', 'it', 'it-CH', 'it-IT', 'ja', 'ko', 'nl', 'nl-BE', 'nl-NL', 'no', 'no-NO', 'pa', 'pl', 'pt', 'pt-BR', 'ru', 'ru-RU', 'sr', 'sr-RS', 'sv', 'sv-SE', 'te', 'zh', 'zh-CN', 'zh-HK', 'zh-SG', 'zh-TW']}, 'type'=>'code', 'path'=>'MolecularSequence.language', 'min'=>0, 'max'=>1, 'binding'=>{'strength'=>'preferred', 'uri'=>'http://hl7.org/fhir/ValueSet/languages'}}, 'text' => {'type'=>'Narrative', 'path'=>'MolecularSequence.text', 'min'=>0, 'max'=>1}, 'contained' => {'type'=>'Resource', 'path'=>'MolecularSequence.contained', 'min'=>0, 'max'=>Float::INFINITY}, 'extension' => {'type'=>'Extension', 'path'=>'MolecularSequence.extension', 'min'=>0, 'max'=>Float::INFINITY}, 'modifierExtension' => {'type'=>'Extension', 'path'=>'MolecularSequence.modifierExtension', 'min'=>0, 'max'=>Float::INFINITY}, 'identifier' => {'type'=>'Identifier', 'path'=>'MolecularSequence.identifier', 'min'=>0, 'max'=>Float::INFINITY}, 'type' => {'valid_codes'=>{'http://hl7.org/fhir/sequence-type'=>['aa', 'dna', 'rna']}, 'type'=>'code', 'path'=>'MolecularSequence.type', 'min'=>0, 'max'=>1, 'binding'=>{'strength'=>'required', 'uri'=>'http://hl7.org/fhir/ValueSet/sequence-type|4.0.0'}}, 'coordinateSystem' => {'type'=>'integer', 'path'=>'MolecularSequence.coordinateSystem', 'min'=>1, 'max'=>1}, 'patient' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Patient'], 'type'=>'Reference', 'path'=>'MolecularSequence.patient', 'min'=>0, 'max'=>1}, 'specimen' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Specimen'], 'type'=>'Reference', 'path'=>'MolecularSequence.specimen', 'min'=>0, 'max'=>1}, 'device' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Device'], 'type'=>'Reference', 'path'=>'MolecularSequence.device', 'min'=>0, 'max'=>1}, 'performer' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Organization'], 'type'=>'Reference', 'path'=>'MolecularSequence.performer', 'min'=>0, 'max'=>1}, 'quantity' => {'type'=>'Quantity', 'path'=>'MolecularSequence.quantity', 'min'=>0, 'max'=>1}, 'referenceSeq' => {'type'=>'MolecularSequence::ReferenceSeq', 'path'=>'MolecularSequence.referenceSeq', 'min'=>0, 'max'=>1}, 'variant' => {'type'=>'MolecularSequence::Variant', 'path'=>'MolecularSequence.variant', 'min'=>0, 'max'=>Float::INFINITY}, 'observedSeq' => {'type'=>'string', 'path'=>'MolecularSequence.observedSeq', 'min'=>0, 'max'=>1}, 'quality' => {'type'=>'MolecularSequence::Quality', 'path'=>'MolecularSequence.quality', 'min'=>0, 'max'=>Float::INFINITY}, 'readCoverage' => {'type'=>'integer', 'path'=>'MolecularSequence.readCoverage', 'min'=>0, 'max'=>1}, 'repository' => {'type'=>'MolecularSequence::Repository', 'path'=>'MolecularSequence.repository', 'min'=>0, 'max'=>Float::INFINITY}, 'pointer' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/MolecularSequence'], 'type'=>'Reference', 'path'=>'MolecularSequence.pointer', 'min'=>0, 'max'=>Float::INFINITY}, 'structureVariant' => {'type'=>'MolecularSequence::StructureVariant', 'path'=>'MolecularSequence.structureVariant', 'min'=>0, 'max'=>Float::INFINITY} }
Instance Attribute Summary collapse
-
#contained ⇒ Object
0-* [ Resource ].
-
#coordinateSystem ⇒ Object
1-1 integer.
-
#device ⇒ Object
0-1 Reference(Device).
-
#extension ⇒ Object
0-* [ Extension ].
-
#id ⇒ Object
0-1 id.
-
#identifier ⇒ Object
0-* [ Identifier ].
-
#implicitRules ⇒ Object
0-1 uri.
-
#language ⇒ Object
0-1 code.
-
#meta ⇒ Object
0-1 Meta.
-
#modifierExtension ⇒ Object
0-* [ Extension ].
-
#observedSeq ⇒ Object
0-1 string.
-
#patient ⇒ Object
0-1 Reference(Patient).
-
#performer ⇒ Object
0-1 Reference(Organization).
-
#pointer ⇒ Object
0-* [ Reference(MolecularSequence) ].
-
#quality ⇒ Object
0-* [ MolecularSequence::Quality ].
-
#quantity ⇒ Object
0-1 Quantity.
-
#readCoverage ⇒ Object
0-1 integer.
-
#referenceSeq ⇒ Object
0-1 MolecularSequence::ReferenceSeq.
-
#repository ⇒ Object
0-* [ MolecularSequence::Repository ].
-
#specimen ⇒ Object
0-1 Reference(Specimen).
-
#structureVariant ⇒ Object
0-* [ MolecularSequence::StructureVariant ].
-
#text ⇒ Object
0-1 Narrative.
-
#type ⇒ Object
0-1 code.
-
#variant ⇒ Object
0-* [ MolecularSequence::Variant ].
Instance Method Summary collapse
Methods included from Xml
from_xml, #to_xml, valid?, validate
Methods included from Deprecate
Methods included from Json
Methods included from Hashable
Methods inherited from Model
#==, #attribute_mismatch, #compare_attribute, #equals?, #hash, #initialize, #method_missing, #mismatch, #primitive?, #to_reference, #valid?, #validate, #validate_profile
Constructor Details
This class inherits a constructor from FHIR::Model
Dynamic Method Handling
This class handles dynamic methods through the method_missing method in the class FHIR::Model
Instance Attribute Details
#contained ⇒ Object
0-* [ Resource ]
272 273 274 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 272 def contained @contained end |
#coordinateSystem ⇒ Object
1-1 integer
277 278 279 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 277 def coordinateSystem @coordinateSystem end |
#device ⇒ Object
0-1 Reference(Device)
280 281 282 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 280 def device @device end |
#extension ⇒ Object
0-* [ Extension ]
273 274 275 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 273 def extension @extension end |
#id ⇒ Object
0-1 id
267 268 269 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 267 def id @id end |
#identifier ⇒ Object
0-* [ Identifier ]
275 276 277 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 275 def identifier @identifier end |
#implicitRules ⇒ Object
0-1 uri
269 270 271 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 269 def implicitRules @implicitRules end |
#language ⇒ Object
0-1 code
270 271 272 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 270 def language @language end |
#meta ⇒ Object
0-1 Meta
268 269 270 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 268 def @meta end |
#modifierExtension ⇒ Object
0-* [ Extension ]
274 275 276 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 274 def modifierExtension @modifierExtension end |
#observedSeq ⇒ Object
0-1 string
285 286 287 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 285 def observedSeq @observedSeq end |
#patient ⇒ Object
0-1 Reference(Patient)
278 279 280 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 278 def patient @patient end |
#performer ⇒ Object
0-1 Reference(Organization)
281 282 283 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 281 def performer @performer end |
#pointer ⇒ Object
0-* [ Reference(MolecularSequence) ]
289 290 291 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 289 def pointer @pointer end |
#quality ⇒ Object
0-* [ MolecularSequence::Quality ]
286 287 288 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 286 def quality @quality end |
#quantity ⇒ Object
0-1 Quantity
282 283 284 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 282 def quantity @quantity end |
#readCoverage ⇒ Object
0-1 integer
287 288 289 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 287 def readCoverage @readCoverage end |
#referenceSeq ⇒ Object
0-1 MolecularSequence::ReferenceSeq
283 284 285 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 283 def referenceSeq @referenceSeq end |
#repository ⇒ Object
0-* [ MolecularSequence::Repository ]
288 289 290 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 288 def repository @repository end |
#specimen ⇒ Object
0-1 Reference(Specimen)
279 280 281 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 279 def specimen @specimen end |
#structureVariant ⇒ Object
0-* [ MolecularSequence::StructureVariant ]
290 291 292 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 290 def structureVariant @structureVariant end |
#text ⇒ Object
0-1 Narrative
271 272 273 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 271 def text @text end |
#type ⇒ Object
0-1 code
276 277 278 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 276 def type @type end |
#variant ⇒ Object
0-* [ MolecularSequence::Variant ]
284 285 286 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 284 def variant @variant end |
Instance Method Details
#resourceType ⇒ Object
292 293 294 |
# File 'lib/fhir_models/fhir/resources/MolecularSequence.rb', line 292 def resourceType 'MolecularSequence' end |