Class: FHIR::R4B::MolecularSequence

Inherits:
Model show all
Includes:
Hashable, Json, Xml
Defined in:
lib/fhir_models/r4b/generated/resources/MolecularSequence.rb

Defined Under Namespace

Classes: Quality, ReferenceSeq, Repository, StructureVariant, Variant

Constant Summary collapse

SEARCH_PARAMS = 
['chromosome', 'chromosome-variant-coordinate', 'chromosome-window-coordinate', 'identifier', 'patient', 'referenceseqid', 'referenceseqid-variant-coordinate', 'referenceseqid-window-coordinate', 'type', 'variant-end', 'variant-start', 'window-end', 'window-start']
METADATA = 
{
  'id' => {'type'=>'id', 'path'=>'MolecularSequence.id', 'min'=>0, 'max'=>1},
  'meta' => {'type'=>'Meta', 'path'=>'MolecularSequence.meta', 'min'=>0, 'max'=>1},
  'implicitRules' => {'type'=>'uri', 'path'=>'MolecularSequence.implicitRules', 'min'=>0, 'max'=>1},
  'language' => {'valid_codes'=>{'urn:ietf:bcp:47'=>['ar', 'bn', 'cs', 'da', 'de', 'de-AT', 'de-CH', 'de-DE', 'el', 'en', 'en-AU', 'en-CA', 'en-GB', 'en-IN', 'en-NZ', 'en-SG', 'en-US', 'es', 'es-AR', 'es-ES', 'es-UY', 'fi', 'fr', 'fr-BE', 'fr-CH', 'fr-FR', 'fy', 'fy-NL', 'hi', 'hr', 'it', 'it-CH', 'it-IT', 'ja', 'ko', 'nl', 'nl-BE', 'nl-NL', 'no', 'no-NO', 'pa', 'pl', 'pt', 'pt-BR', 'ru', 'ru-RU', 'sr', 'sr-RS', 'sv', 'sv-SE', 'te', 'zh', 'zh-CN', 'zh-HK', 'zh-SG', 'zh-TW']}, 'type'=>'code', 'path'=>'MolecularSequence.language', 'min'=>0, 'max'=>1, 'binding'=>{'strength'=>'preferred', 'uri'=>'http://hl7.org/fhir/ValueSet/languages'}},
  'text' => {'type'=>'Narrative', 'path'=>'MolecularSequence.text', 'min'=>0, 'max'=>1},
  'contained' => {'type'=>'Resource', 'path'=>'MolecularSequence.contained', 'min'=>0, 'max'=>Float::INFINITY},
  'extension' => {'type'=>'Extension', 'path'=>'MolecularSequence.extension', 'min'=>0, 'max'=>Float::INFINITY},
  'modifierExtension' => {'type'=>'Extension', 'path'=>'MolecularSequence.modifierExtension', 'min'=>0, 'max'=>Float::INFINITY},
  'identifier' => {'type'=>'Identifier', 'path'=>'MolecularSequence.identifier', 'min'=>0, 'max'=>Float::INFINITY},
  'type' => {'valid_codes'=>{'http://hl7.org/fhir/sequence-type'=>['aa', 'dna', 'rna']}, 'type'=>'code', 'path'=>'MolecularSequence.type', 'min'=>0, 'max'=>1, 'binding'=>{'strength'=>'required', 'uri'=>'http://hl7.org/fhir/ValueSet/sequence-type'}},
  'coordinateSystem' => {'type'=>'integer', 'path'=>'MolecularSequence.coordinateSystem', 'min'=>1, 'max'=>1},
  'patient' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Patient'], 'type'=>'Reference', 'path'=>'MolecularSequence.patient', 'min'=>0, 'max'=>1},
  'specimen' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Specimen'], 'type'=>'Reference', 'path'=>'MolecularSequence.specimen', 'min'=>0, 'max'=>1},
  'device' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Device'], 'type'=>'Reference', 'path'=>'MolecularSequence.device', 'min'=>0, 'max'=>1},
  'performer' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Organization'], 'type'=>'Reference', 'path'=>'MolecularSequence.performer', 'min'=>0, 'max'=>1},
  'quantity' => {'type'=>'Quantity', 'path'=>'MolecularSequence.quantity', 'min'=>0, 'max'=>1},
  'referenceSeq' => {'type'=>'MolecularSequence::ReferenceSeq', 'path'=>'MolecularSequence.referenceSeq', 'min'=>0, 'max'=>1},
  'variant' => {'type'=>'MolecularSequence::Variant', 'path'=>'MolecularSequence.variant', 'min'=>0, 'max'=>Float::INFINITY},
  'observedSeq' => {'type'=>'string', 'path'=>'MolecularSequence.observedSeq', 'min'=>0, 'max'=>1},
  'quality' => {'type'=>'MolecularSequence::Quality', 'path'=>'MolecularSequence.quality', 'min'=>0, 'max'=>Float::INFINITY},
  'readCoverage' => {'type'=>'integer', 'path'=>'MolecularSequence.readCoverage', 'min'=>0, 'max'=>1},
  'repository' => {'type'=>'MolecularSequence::Repository', 'path'=>'MolecularSequence.repository', 'min'=>0, 'max'=>Float::INFINITY},
  'pointer' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/MolecularSequence'], 'type'=>'Reference', 'path'=>'MolecularSequence.pointer', 'min'=>0, 'max'=>Float::INFINITY},
  'structureVariant' => {'type'=>'MolecularSequence::StructureVariant', 'path'=>'MolecularSequence.structureVariant', 'min'=>0, 'max'=>Float::INFINITY}
}

Constants included from FHIR::R4

FHIR::R4::PRIMITIVES, FHIR::R4::RESOURCES, FHIR::R4::TYPES

Constants included from FHIR

Account, ActivityDefinition, Address, AdverseEvent, Age, AllergyIntolerance, Annotation, Appointment, AppointmentResponse, Attachment, AuditEvent, BackboneElement, Basic, Binary, BiologicallyDerivedProduct, BodyStructure, Bundle, CapabilityStatement, CarePlan, CareTeam, CatalogEntry, ChargeItem, ChargeItemDefinition, Claim, ClaimResponse, ClinicalImpression, CodeSystem, CodeableConcept, Coding, Communication, CommunicationRequest, CompartmentDefinition, Composition, ConceptMap, Condition, Consent, ContactDetail, ContactPoint, Contract, Contributor, Count, Coverage, CoverageEligibilityRequest, CoverageEligibilityResponse, DataRequirement, Definitions, DetectedIssue, Device, DeviceDefinition, DeviceMetric, DeviceRequest, DeviceUseStatement, DiagnosticReport, Distance, DocumentManifest, DocumentReference, DomainResource, Dosage, Duration, EffectEvidenceSynthesis, Element, ElementDefinition, Encounter, Endpoint, EnrollmentRequest, EnrollmentResponse, EpisodeOfCare, EventDefinition, Evidence, EvidenceVariable, ExampleScenario, ExplanationOfBenefit, Expression, Extension, FamilyMemberHistory, Flag, Goal, GraphDefinition, Group, GuidanceResponse, HealthcareService, HumanName, Identifier, ImagingStudy, Immunization, ImmunizationEvaluation, ImmunizationRecommendation, ImplementationGuide, InsurancePlan, Invoice, Library, Linkage, List, Location, MarketingStatus, Measure, MeasureReport, Media, Medication, MedicationAdministration, MedicationDispense, MedicationKnowledge, MedicationRequest, MedicationStatement, MedicinalProduct, MedicinalProductAuthorization, MedicinalProductContraindication, MedicinalProductIndication, MedicinalProductIngredient, MedicinalProductInteraction, MedicinalProductManufactured, MedicinalProductPackaged, MedicinalProductPharmaceutical, MedicinalProductUndesirableEffect, MessageDefinition, MessageHeader, Meta, MolecularSequence, Money, NamingSystem, Narrative, NutritionOrder, Observation, ObservationDefinition, OperationDefinition, OperationOutcome, Organization, OrganizationAffiliation, PRIMITIVES, ParameterDefinition, Parameters, Patient, PaymentNotice, PaymentReconciliation, Period, Person, PlanDefinition, Population, Practitioner, PractitionerRole, Procedure, ProdCharacteristic, ProductShelfLife, Provenance, Quantity, Questionnaire, QuestionnaireResponse, FHIR::RESOURCES, FHIR::Range, FHIR::Ratio, FHIR::Reference, FHIR::RelatedArtifact, FHIR::RelatedPerson, FHIR::RequestGroup, FHIR::ResearchDefinition, FHIR::ResearchElementDefinition, FHIR::ResearchStudy, FHIR::ResearchSubject, FHIR::Resource, FHIR::RiskAssessment, FHIR::RiskEvidenceSynthesis, SampledData, Schedule, SearchParameter, ServiceRequest, Signature, Slot, Specimen, SpecimenDefinition, StructureDefinition, StructureDefinitionCompare, StructureMap, Subscription, Substance, SubstanceAmount, SubstanceNucleicAcid, SubstancePolymer, SubstanceProtein, SubstanceReferenceInformation, SubstanceSourceMaterial, SubstanceSpecification, SupplyDelivery, SupplyRequest, TYPES, Task, TerminologyCapabilities, TestReport, TestScript, Timing, TriggerDefinition, UsageContext, ValueSet, VerificationResult, VisionPrescription

Constants included from FHIR::R4B

PRIMITIVES, RESOURCES, TYPES

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from FHIR::R4

#fhir_version_string, #versioned_fhir_module

Methods included from FHIR

default_logger, fhir_version_string, logger, logger=, primitive?, versioned_fhir_module

Methods included from ClassMethods

#from_contents

Methods included from ClassXml

#from_xml, #valid?, #validate, #xml_node_to_hash

Methods included from InstanceXml

#hash_to_xml_node, #to_xml

Methods included from ClassJson

#from_json

Methods included from InstanceJson

#to_json

Methods included from Hashable

#from_hash, #to_hash

Methods included from FHIR::R4B

#fhir_version_string, #versioned_fhir_module

Methods inherited from Model

#==, #attribute_mismatch, #compare_attribute, #each_element, #equals?, #hash, #initialize, #method_missing, #mismatch, #primitive?, #respond_to_missing?, #to_reference, #valid?, #validate, #validate_profile

Methods included from Deprecate

#deprecate

Constructor Details

This class inherits a constructor from FHIR::Model

Dynamic Method Handling

This class handles dynamic methods through the method_missing method in the class FHIR::Model

Instance Attribute Details

#contained ⇒ Object

0-* [ Resource ]



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 273

def contained
  @contained
end

#coordinateSystem ⇒ Object

1-1 integer



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 278

def coordinateSystem
  @coordinateSystem
end

#device ⇒ Object

0-1 Reference(Device)



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 281

def device
  @device
end

#extension ⇒ Object

0-* [ Extension ]



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 274

def extension
  @extension
end

#id ⇒ Object

0-1 id



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 268

def id
  @id
end

#identifier ⇒ Object

0-* [ Identifier ]



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 276

def identifier
  @identifier
end

#implicitRules ⇒ Object

0-1 uri



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 270

def implicitRules
  @implicitRules
end

#language ⇒ Object

0-1 code



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 271

def language
  @language
end

#meta ⇒ Object

0-1 Meta



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 269

def meta
  @meta
end

#modifierExtension ⇒ Object

0-* [ Extension ]



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 275

def modifierExtension
  @modifierExtension
end

#observedSeq ⇒ Object

0-1 string



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 286

def observedSeq
  @observedSeq
end

#patient ⇒ Object

0-1 Reference(Patient)



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 279

def patient
  @patient
end

#performer ⇒ Object

0-1 Reference(Organization)



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 282

def performer
  @performer
end

#pointer ⇒ Object

0-* [ Reference(MolecularSequence) ]



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 290

def pointer
  @pointer
end

#quality ⇒ Object

0-* [ MolecularSequence::Quality ]



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 287

def quality
  @quality
end

#quantity ⇒ Object

0-1 Quantity



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 283

def quantity
  @quantity
end

#readCoverage ⇒ Object

0-1 integer



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 288

def readCoverage
  @readCoverage
end

#referenceSeq ⇒ Object

0-1 MolecularSequence::ReferenceSeq



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 284

def referenceSeq
  @referenceSeq
end

#repository ⇒ Object

0-* [ MolecularSequence::Repository ]



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 289

def repository
  @repository
end

#specimen ⇒ Object

0-1 Reference(Specimen)



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 280

def specimen
  @specimen
end

#structureVariant ⇒ Object

0-* [ MolecularSequence::StructureVariant ]



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 291

def structureVariant
  @structureVariant
end

#text ⇒ Object

0-1 Narrative



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 272

def text
  @text
end

#type ⇒ Object

0-1 code



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 277

def type
  @type
end

#variant ⇒ Object

0-* [ MolecularSequence::Variant ]



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 285

def variant
  @variant
end

Instance Method Details

#resourceType ⇒ Object 



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# File 'lib/fhir_models/r4b/generated/resources/MolecularSequence.rb', line 293

def resourceType
  'MolecularSequence'
end