Class: GenomicLocus::Position

Inherits:

Object

Object
GenomicLocus::Position

show all

Includes:: GenomicLocus

Defined in:: lib/genomic_locus.rb

Instance Attribute Summary collapse

#pos ⇒ Object (also: #start, #stop)

Returns the value of attribute pos.
#seqname ⇒ Object

Returns the value of attribute seqname.

Instance Method Summary collapse

#copy ⇒ Object
#initialize(seqname, pos) ⇒ Position constructor

A new instance of Position.

Methods included from GenomicLocus

#default_stop, #loc, #long_chrom, #range, #short_chrom

Methods included from IntervalList::Interval

#above?, #below?, #center, #clone, #contains?, #diff, #dist, #intersect, #overlaps?, #size, #union

Constructor Details

#initialize(seqname, pos) ⇒ `Position`

Returns a new instance of Position.



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# File 'lib/genomic_locus.rb', line 7

def initialize seqname, pos
  @seqname, @pos = seqname, pos
end

Instance Attribute Details

#pos ⇒ `Object` Also known as: start, stop

Returns the value of attribute pos.



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# File 'lib/genomic_locus.rb', line 6

def pos
  @pos
end

#seqname ⇒ `Object`

Returns the value of attribute seqname.



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# File 'lib/genomic_locus.rb', line 6

def seqname
  @seqname
end

Instance Method Details

#copy ⇒ `Object`



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# File 'lib/genomic_locus.rb', line 13

def copy
  self.class.new seqname, pos
end