Class: GenomicLocus::Region

Inherits:

Object

Object
GenomicLocus::Region

show all

Includes:: GenomicLocus

Defined in:: lib/genomic_locus.rb

Instance Attribute Summary collapse

#seqname ⇒ Object

Returns the value of attribute seqname.
#start ⇒ Object

Returns the value of attribute start.
#stop ⇒ Object

Returns the value of attribute stop.

Instance Method Summary collapse

#copy ⇒ Object
#initialize(seqname, start, stop) ⇒ Region constructor

A new instance of Region.

Methods included from GenomicLocus

#default_stop, #loc, #long_chrom, #range, #short_chrom

Methods included from IntervalList::Interval

#above?, #below?, #center, #clone, #contains?, #diff, #dist, #intersect, #overlaps?, #size, #union

Constructor Details

#initialize(seqname, start, stop) ⇒ `Region`

Returns a new instance of Region.



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# File 'lib/genomic_locus.rb', line 21

def initialize seqname, start, stop
  @seqname, @start, @stop = seqname, start, stop
end

Instance Attribute Details

#seqname ⇒ `Object`

Returns the value of attribute seqname.



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# File 'lib/genomic_locus.rb', line 20

def seqname
  @seqname
end

#start ⇒ `Object`

Returns the value of attribute start.



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# File 'lib/genomic_locus.rb', line 20

def start
  @start
end

#stop ⇒ `Object`

Returns the value of attribute stop.



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# File 'lib/genomic_locus.rb', line 20

def stop
  @stop
end

Instance Method Details

#copy ⇒ `Object`



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# File 'lib/genomic_locus.rb', line 25

def copy
  self.class.new seqname, start, stop
end