Class: TriNuc

Inherits:
Object
  • Object
show all
Defined in:
lib/genetic_code.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(seq, pos, strand, ind = nil) ⇒ TriNuc

Returns a new instance of TriNuc.

Raises:

  • (ArgumentError) 


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# File 'lib/genetic_code.rb', line 132

def initialize seq, pos, strand, ind=nil
  raise ArgumentError, "Sequence is malformed" unless seq && seq =~ /^[ATGC]{3}$/
  raise ArgumentError, "Three genomic coordinates are required" unless pos.is_a?(Array) && pos.length == 3
  @seq = seq.to_sym
  @pos = pos
  @strand = strand
  @index = ind
  @codon = Codon[@seq]
end

Instance Attribute Details

#codon ⇒ Object (readonly)

Returns the value of attribute codon.



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# File 'lib/genetic_code.rb', line 131

def codon
  @codon
end

#index ⇒ Object (readonly)

Returns the value of attribute index.



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# File 'lib/genetic_code.rb', line 131

def index
  @index
end

#pos ⇒ Object (readonly)

Returns the value of attribute pos.



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# File 'lib/genetic_code.rb', line 131

def pos
  @pos
end

#seq ⇒ Object (readonly)

Returns the value of attribute seq.



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# File 'lib/genetic_code.rb', line 131

def seq
  @seq
end

#strand ⇒ Object (readonly)

Returns the value of attribute strand.



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# File 'lib/genetic_code.rb', line 131

def strand
  @strand
end