Class: GFA::Record::Walk

Inherits:
GFA::Record show all
Defined in:
lib/gfa/record/walk.rb

Constant Summary collapse

CODE = 
:W
REQ_FIELDS = 
%i[sample_id hap_index seq_id seq_start seq_end walk]
OPT_FIELDS = 
{}

Constants inherited from GFA::Record

CODES, TYPES

Instance Attribute Summary

Attributes inherited from GFA::Record

#fields

Instance Method Summary collapse

Methods inherited from GFA::Record

#[], [], #code, code_class, #dup, #empty?, #eql?, #hash, name_class, #to_s, #type

Constructor Details

#initialize(sample_id, hap_index, seq_id, seq_start, seq_end, walk, *opt_fields) ⇒ Walk

Returns a new instance of Walk.



10
11
12
13
14
15
16
17
18
19
 
# File 'lib/gfa/record/walk.rb', line 10

def initialize(sample_id, hap_index, seq_id, seq_start, seq_end, walk, *opt_fields)
  @fields = {}
  add_field(2, :Z, sample_id, /[!-)+-<>-~][!-~]*/)
  add_field(3, :i, hap_index, /[0-9]+/)
  add_field(4, :Z, seq_id,    /[!-)+-<>-~][!-~]*/)
  add_field(5, :i, seq_start, /\*|[0-9]+/)
  add_field(6, :i, seq_end,   /\*|[0-9]+/)
  add_field(7, :Z, walk,      /([><][!-;=?-~]+)+/)
  opt_fields.each { |f| add_opt_field(f, OPT_FIELDS) }
end