Class: Google::Apis::GenomicsV1beta2::ImportVariantsRequest

Inherits:
Object
  • Object
show all
Includes:
Core::Hashable
Defined in:
generated/google/apis/genomics_v1beta2/classes.rb,
generated/google/apis/genomics_v1beta2/representations.rb,
generated/google/apis/genomics_v1beta2/representations.rb

Overview

The variant data import request.

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Core::Hashable

process_value, #to_h

Constructor Details

#initialize(**args) ⇒ ImportVariantsRequest

Returns a new instance of ImportVariantsRequest.



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# File 'generated/google/apis/genomics_v1beta2/classes.rb', line 959

def initialize(**args)
   update!(**args)
end

Instance Attribute Details

#format ⇒ String

The format of the variant data being imported. If unspecified, defaults to to " VCF". Corresponds to the JSON property format

Returns:

  • (String) 


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# File 'generated/google/apis/genomics_v1beta2/classes.rb', line 939

def format
  @format
end

#normalize_reference_names ⇒ Boolean Also known as: normalize_reference_names?

Convert reference names to the canonical representation. hg19 haploytypes ( those reference names containing "_hap") are not modified in any way. All other reference names are modified according to the following rules: The reference name is capitalized. The "chr" prefix is dropped for all autosomes and sex chromsomes. For example "chr17" becomes "17" and "chrX" becomes "X". All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT". Corresponds to the JSON property normalizeReferenceNames

Returns:

  • (Boolean) 


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# File 'generated/google/apis/genomics_v1beta2/classes.rb', line 949

def normalize_reference_names
  @normalize_reference_names
end

#source_uris ⇒ Array<String>

A list of URIs referencing variant files in Google Cloud Storage. URIs can include wildcards as described here. Note that recursive wildcards ('**') are not supported. Corresponds to the JSON property sourceUris

Returns:

  • (Array<String>) 


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# File 'generated/google/apis/genomics_v1beta2/classes.rb', line 957

def source_uris
  @source_uris
end

Instance Method Details

#update!(**args) ⇒ Object

Update properties of this object



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# File 'generated/google/apis/genomics_v1beta2/classes.rb', line 964

def update!(**args)
  @format = args[:format] unless args[:format].nil?
  @normalize_reference_names = args[:normalize_reference_names] unless args[:normalize_reference_names].nil?
  @source_uris = args[:source_uris] unless args[:source_uris].nil?
end