Class: Google::Apis::GenomicsV1beta2::PairedFastqSource

Inherits:
Object
  • Object
show all
Includes:
Core::Hashable
Defined in:
generated/google/apis/genomics_v1beta2/classes.rb,
generated/google/apis/genomics_v1beta2/representations.rb,
generated/google/apis/genomics_v1beta2/representations.rb

Overview

Describes a paired-end FASTQ file source for alignment.

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Core::Hashable

process_value, #to_h

Constructor Details

#initialize(**args) ⇒ PairedFastqSource

Returns a new instance of PairedFastqSource.



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# File 'generated/google/apis/genomics_v1beta2/classes.rb', line 1409

def initialize(**args)
   update!(**args)
end

Instance Attribute Details

#first_source_uris ⇒ Array<String>

A list of URIs pointing at paired end FASTQ files in Google Cloud Storage which will be aligned. The first of each paired file should be specified here, in an order that matches the second of each paired file specified in secondSourceUris. For example: firstSourceUris: [file1_1.fq, file2_1.fq], secondSourceUris: [file1_2.fq, file2_2.fq]. The caller must have READ permissions for these files. Corresponds to the JSON property firstSourceUris

Returns:

  • (Array<String>) 


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# File 'generated/google/apis/genomics_v1beta2/classes.rb', line 1391

def first_source_uris
  @first_source_uris
end

#metadata ⇒ Google::Apis::GenomicsV1beta2::FastqMetadata

Optionally specifies the metadata to be associated with the final aligned read group set. Corresponds to the JSON property metadata

Returns:



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# File 'generated/google/apis/genomics_v1beta2/classes.rb', line 1397

def metadata
  @metadata
end

#second_source_uris ⇒ Array<String>

A list of URIs pointing at paired end FASTQ files in Google Cloud Storage which will be aligned. The second of each paired file should be specified here, in an order that matches the first of each paired file specified in firstSourceUris. For example: firstSourceUris: [file1_1.fq, file2_1.fq], secondSourceUris: [file1_2.fq, file2_2.fq]. The caller must have READ permissions for these files. Corresponds to the JSON property secondSourceUris

Returns:

  • (Array<String>) 


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# File 'generated/google/apis/genomics_v1beta2/classes.rb', line 1407

def second_source_uris
  @second_source_uris
end

Instance Method Details

#update!(**args) ⇒ Object

Update properties of this object



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# File 'generated/google/apis/genomics_v1beta2/classes.rb', line 1414

def update!(**args)
  @first_source_uris = args[:first_source_uris] unless args[:first_source_uris].nil?
  @metadata = args[:metadata] unless args[:metadata].nil?
  @second_source_uris = args[:second_source_uris] unless args[:second_source_uris].nil?
end