Class: Google::Apis::GenomicsV1::VariantAnnotation
- Inherits:
-
Object
- Object
- Google::Apis::GenomicsV1::VariantAnnotation
- Includes:
- Core::Hashable, Core::JsonObjectSupport
- Defined in:
- generated/google/apis/genomics_v1/classes.rb,
generated/google/apis/genomics_v1/representations.rb,
generated/google/apis/genomics_v1/representations.rb
Instance Attribute Summary collapse
-
#alternate_bases ⇒ String
The alternate allele for this variant.
-
#clinical_significance ⇒ String
Describes the clinical significance of a variant.
-
#conditions ⇒ Array<Google::Apis::GenomicsV1::ClinicalCondition>
The set of conditions associated with this variant.
-
#effect ⇒ String
Effect of the variant on the coding sequence.
-
#gene_id ⇒ String
Google annotation ID of the gene affected by this variant.
-
#transcript_ids ⇒ Array<String>
Google annotation IDs of the transcripts affected by this variant.
-
#type ⇒ String
Type has been adapted from ClinVar's list of variant types.
Instance Method Summary collapse
-
#initialize(**args) ⇒ VariantAnnotation
constructor
A new instance of VariantAnnotation.
-
#update!(**args) ⇒ Object
Update properties of this object.
Methods included from Core::JsonObjectSupport
Methods included from Core::Hashable
Constructor Details
#initialize(**args) ⇒ VariantAnnotation
Returns a new instance of VariantAnnotation.
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# File 'generated/google/apis/genomics_v1/classes.rb', line 328 def initialize(**args) update!(**args) end |
Instance Attribute Details
#alternate_bases ⇒ String
The alternate allele for this variant. If multiple alternate alleles exist at
this location, create a separate variant for each one, as they may represent
distinct conditions.
Corresponds to the JSON property alternateBases
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# File 'generated/google/apis/genomics_v1/classes.rb', line 301 def alternate_bases @alternate_bases end |
#clinical_significance ⇒ String
Describes the clinical significance of a variant. It is adapted from the
ClinVar controlled vocabulary for clinical significance described at: http://
www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
Corresponds to the JSON property clinicalSignificance
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# File 'generated/google/apis/genomics_v1/classes.rb', line 326 def clinical_significance @clinical_significance end |
#conditions ⇒ Array<Google::Apis::GenomicsV1::ClinicalCondition>
The set of conditions associated with this variant. A condition describes the
way a variant influences human health.
Corresponds to the JSON property conditions
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# File 'generated/google/apis/genomics_v1/classes.rb', line 319 def conditions @conditions end |
#effect ⇒ String
Effect of the variant on the coding sequence.
Corresponds to the JSON property effect
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# File 'generated/google/apis/genomics_v1/classes.rb', line 294 def effect @effect end |
#gene_id ⇒ String
Google annotation ID of the gene affected by this variant. This should be
provided when the variant is created.
Corresponds to the JSON property geneId
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# File 'generated/google/apis/genomics_v1/classes.rb', line 307 def gene_id @gene_id end |
#transcript_ids ⇒ Array<String>
Google annotation IDs of the transcripts affected by this variant. These
should be provided when the variant is created.
Corresponds to the JSON property transcriptIds
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# File 'generated/google/apis/genomics_v1/classes.rb', line 313 def transcript_ids @transcript_ids end |
#type ⇒ String
Type has been adapted from ClinVar's list of variant types.
Corresponds to the JSON property type
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# File 'generated/google/apis/genomics_v1/classes.rb', line 289 def type @type end |
Instance Method Details
#update!(**args) ⇒ Object
Update properties of this object
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# File 'generated/google/apis/genomics_v1/classes.rb', line 333 def update!(**args) @type = args[:type] if args.key?(:type) @effect = args[:effect] if args.key?(:effect) @alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases) @gene_id = args[:gene_id] if args.key?(:gene_id) @transcript_ids = args[:transcript_ids] if args.key?(:transcript_ids) @conditions = args[:conditions] if args.key?(:conditions) @clinical_significance = args[:clinical_significance] if args.key?(:clinical_significance) end |