Class: Bio::Go::SubsumeTester
- Inherits:
-
Object
- Object
- Bio::Go::SubsumeTester
- Defined in:
- lib/go.rb
Overview
When repeatedly testing subsumtion by a certain GO term, it is faster to instantiate a SubsumeTester and use Bio::GO::SubsumeTester#subsume?, rather than repeatedly calling Bio::GO#subsume? because SubsumeTester does caching.
Instance Attribute Summary collapse
-
#master_go_id ⇒ Object
readonly
Returns the value of attribute master_go_id.
-
#subsumer_offspring ⇒ Object
readonly
Returns the value of attribute subsumer_offspring.
Instance Method Summary collapse
-
#initialize(go_object, subsumer_go_id, check_for_synonym = true) ⇒ SubsumeTester
constructor
A new instance of SubsumeTester.
- #subsume?(subsumer_go_id, check_for_synonym = true) ⇒ Boolean
Constructor Details
#initialize(go_object, subsumer_go_id, check_for_synonym = true) ⇒ SubsumeTester
Returns a new instance of SubsumeTester.
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# File 'lib/go.rb', line 192 def initialize(go_object, subsumer_go_id, check_for_synonym=true) @go = go_object if check_for_synonym @master_go_id = @go.primary_go_id(subsumer_go_id) else @master_go_id = subsumer_go_id end @subsumer_offspring = @go.go_offspring(@master_go_id) @subsumer_offspring_hash = [@subsumer_offspring].flatten.to_hash end |
Instance Attribute Details
#master_go_id ⇒ Object (readonly)
Returns the value of attribute master_go_id.
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# File 'lib/go.rb', line 190 def master_go_id @master_go_id end |
#subsumer_offspring ⇒ Object (readonly)
Returns the value of attribute subsumer_offspring.
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# File 'lib/go.rb', line 190 def subsumer_offspring @subsumer_offspring end |
Instance Method Details
#subsume?(subsumer_go_id, check_for_synonym = true) ⇒ Boolean
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# File 'lib/go.rb', line 204 def subsume?(subsumer_go_id, check_for_synonym=true) primaree = check_for_synonym ? @go.primary_go_id(subsumer_go_id) : subsumer_go_id return true if @master_go_id == primaree @subsumer_offspring_hash.has_key?(primaree) end |