Class: Komonzu::Command::UseasCommand

Inherits:
GroupBase
  • Object
show all
Defined in:
lib/komonzu/commands/useas.rb

Instance Method Summary collapse

Methods inherited from GroupBase

register

Instance Method Details

#GATK ⇒ Object 



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# File 'lib/komonzu/commands/useas.rb', line 25

def GATK
	provision({ 'run_list' => ['recipe[nextgenseq::gatk]'] })
	say(<<EOM)
	To get access to useful environment variables in this session, execute the following:
		source /etc/profile.d/gatk.sh
EOM
end

#R ⇒ Object 



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# File 'lib/komonzu/commands/useas.rb', line 17

def R
	provision({
		'R' => { 'packages' => options[:packages] || [] },
		'run_list' => ['recipe[r]'] 
	})	
end