Class: MiGA::Cli::Action::About

Inherits:
MiGA::Cli::Action show all
Defined in:
lib/miga/cli/action/about.rb

Constant Summary

Constants included from MiGA

MiGA::CITATION, VERSION, VERSION_DATE, VERSION_NAME

Instance Attribute Summary

Attributes inherited from MiGA::Cli::Action

#cli

Attributes included from MiGA::Common::Net

#remote_connection_uri

Instance Method Summary collapse

Methods inherited from MiGA::Cli::Action

#complete, #empty_action, #initialize, #launch, load, #name

Methods inherited from MiGA

CITATION, CITATION_ARRAY, DEBUG, DEBUG_OFF, DEBUG_ON, DEBUG_TRACE_OFF, DEBUG_TRACE_ON, FULL_VERSION, LONG_VERSION, VERSION, VERSION_DATE, #advance, debug?, debug_trace?, initialized?, #like_io?, #num_suffix, rc_path, #result_files_exist?, #say

Methods included from MiGA::Common::Path

#root_path, #script_path

Methods included from MiGA::Common::Format

#clean_fasta_file, #seqs_length, #tabulate

Methods included from MiGA::Common::Net

#download_file_ftp, #http_request, #known_hosts, #main_server, #net_method, #normalize_encoding, #remote_connection

Methods included from MiGA::Common::SystemCall

#run_cmd, #run_cmd_opts

Constructor Details

This class inherits a constructor from MiGA::Cli::Action

Instance Method Details

#parse_cli ⇒ Object 



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# File 'lib/miga/cli/action/about.rb', line 7

def parse_cli
  cli.defaults = { info: false, processing: false, tabular: false }
  cli.parse do |opt|
    cli.opt_object(opt, [:project])
    opt.on(
      '-p', '--processing',
      'Print information on processing advance'
    ) { |v| cli[:processing] = v }
    opt.on(
      '-m', '--metadata STRING',
      'Print name and metadata field only'
    ) { |v| cli[:datum] = v }
    opt.on(
      '--tab',
      'Return a tab-delimited table'
    ) { |v| cli[:tabular] = v }
  end
end

#perform ⇒ Object 



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# File 'lib/miga/cli/action/about.rb', line 26

def perform
  p = cli.load_project
  if not cli[:datum].nil?
    v = p.metadata[cli[:datum]]
    cli.puts v.nil? ? '?' : v
  elsif cli[:processing]
    keys = Project.DISTANCE_TASKS + Project.INCLADE_TASKS
    cli.puts MiGA.tabulate([:task, :status], keys.map do |k|
      [k, p.add_result(k, false).nil? ? 'queued' : 'done']
    end, cli[:tabular])
  else
    cli.puts MiGA.tabulate([:key, :value], p.metadata.data.keys.map do |k|
      v = p.metadata[k]
      [k, k == :datasets ? v.size : v]
    end, cli[:tabular])
  end
end