Class: Ms::Fasta::Archive

Inherits:

ExternalArchive

• Object
• ExternalArchive
• Ms::Fasta::Archive

Defined in:

lib/ms/fasta/archive.rb

Overview

Provides access to a FASTA file as an ExternalArchive.

Instance Method Summary

• #reindex(&block) ⇒ Object

  Reindexes self to each FASTA entry in io.

• #str_to_entry(str) ⇒ Object

  Returns a Fasta::Entry initialized using str.

Instance Method Details

#reindex(&block) ⇒ Object

Reindexes self to each FASTA entry in io

# File 'lib/ms/fasta/archive.rb', line 10

def reindex(&block)
  reindex_by_sep(nil, :sep_regexp => /\n>/, :sep_length => 1, :entry_follows_sep => true, &block)
end

#str_to_entry(str) ⇒ Object

Returns a Fasta::Entry initialized using str

# File 'lib/ms/fasta/archive.rb', line 15

def str_to_entry(str)
  Entry.parse(str)
end