Class: Ms::Mascot::Dat::Summary::QueryHit

Inherits:
Struct
  • Object
show all
Defined in:
lib/ms/mascot/dat/summary.rb

Overview

QueryHit

Represents query data, infered by inspection of the MS/MS sample results, esp F981123.dat.

# str:   0,832.382767,-0.032939,302,309,6.00,APGFGDNR,16,0000000000,45.35,1,0000002000000000000,0,0,3481.990000
# terms: K,R

index  example              meaning
0      0                    n Missed Cleavages
1      832.382767           Monoisotopic mass of neutral peptide Mr(calc)
2      -0.032939            actual - theoretical delta mass
3      302                  peptide start index
4      309                  peptide end index
5      6.00
6      APGFGDNR             peptide sequence
7      16
8      0000000000           modification sites (including n,c residues; number indicates mod)
9      45.35                score
10     1
11     0000002000000000000
12     0
13     0
14     3481.990000
15     K                    nterm
16     R                    cterm

The dat file is said to be generate by Mascot version 1.0, but the headers section records 2.1.119.

Instance Attribute Summary collapse

Instance Attribute Details

#cterm ⇒ Object

Returns the value of attribute cterm

Returns:

  • (Object) —

    the current value of cterm



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def cterm
  @cterm
end

#delta_mass ⇒ Object

Returns the value of attribute delta_mass

Returns:

  • (Object) —

    the current value of delta_mass



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def delta_mass
  @delta_mass
end

#modifications ⇒ Object

Returns the value of attribute modifications

Returns:

  • (Object) —

    the current value of modifications



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def modifications
  @modifications
end

#n_missed_cleavages ⇒ Object

Returns the value of attribute n_missed_cleavages

Returns:

  • (Object) —

    the current value of n_missed_cleavages



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def n_missed_cleavages
  @n_missed_cleavages
end

#nterm ⇒ Object

Returns the value of attribute nterm

Returns:

  • (Object) —

    the current value of nterm



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def nterm
  @nterm
end

#peptide_end ⇒ Object

Returns the value of attribute peptide_end

Returns:

  • (Object) —

    the current value of peptide_end



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def peptide_end
  @peptide_end
end

#peptide_mass ⇒ Object

Returns the value of attribute peptide_mass

Returns:

  • (Object) —

    the current value of peptide_mass



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def peptide_mass
  @peptide_mass
end

#peptide_start ⇒ Object

Returns the value of attribute peptide_start

Returns:

  • (Object) —

    the current value of peptide_start



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def peptide_start
  @peptide_start
end

#score ⇒ Object

Returns the value of attribute score

Returns:

  • (Object) —

    the current value of score



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def score
  @score
end

#sequence ⇒ Object

Returns the value of attribute sequence

Returns:

  • (Object) —

    the current value of sequence



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def sequence
  @sequence
end

#unknown10 ⇒ Object

Returns the value of attribute unknown10

Returns:

  • (Object) —

    the current value of unknown10



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def unknown10
  @unknown10
end

#unknown11 ⇒ Object

Returns the value of attribute unknown11

Returns:

  • (Object) —

    the current value of unknown11



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def unknown11
  @unknown11
end

#unknown12 ⇒ Object

Returns the value of attribute unknown12

Returns:

  • (Object) —

    the current value of unknown12



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def unknown12
  @unknown12
end

#unknown13 ⇒ Object

Returns the value of attribute unknown13

Returns:

  • (Object) —

    the current value of unknown13



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def unknown13
  @unknown13
end

#unknown14 ⇒ Object

Returns the value of attribute unknown14

Returns:

  • (Object) —

    the current value of unknown14



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def unknown14
  @unknown14
end

#unknown5 ⇒ Object

Returns the value of attribute unknown5

Returns:

  • (Object) —

    the current value of unknown5



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def unknown5
  @unknown5
end

#unknown7 ⇒ Object

Returns the value of attribute unknown7

Returns:

  • (Object) —

    the current value of unknown7



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# File 'lib/ms/mascot/dat/summary.rb', line 109

def unknown7
  @unknown7
end