Class: Mspire::Lipid

Inherits:
Object
  • Object
show all
Defined in:
lib/mspire/lipid.rb,
lib/mspire/lipid/ion.rb,
lib/mspire/lipid/search.rb,
lib/mspire/lipid/search/bin.rb,
lib/mspire/lipid/search/hit.rb,
lib/mspire/lipid/ion/fragment.rb,
lib/mspire/lipid/modification.rb,
lib/mspire/lipid/search/query.rb,
lib/mspire/lipid/search/db_isobar_group.rb,
lib/mspire/lipid/search/probability_distribution.rb

Defined Under Namespace

Classes: Ion, Modification, Search

Constant Summary collapse

CHAIN_PREFIXES =

goes from 1 to 99

{
  'meth' => 1,
  'eth' => 2,
  'prop' => 3,
  'but' => 4,
  'pent' => 5,
  'hex' => 6,
  'hept' => 7,
  'oct' => 8,
  'non' => 9,
  'dec' => 10,
  'undec' => 11,
  'dodec' => 12,
  'tridec' => 13,
  'tetradec' => 14,
  'pentadec' => 15,
  'hexadec' => 16,
  'heptadec' => 17,
  'octadec' => 18,
  'nonadec' => 19,
  'eicos' => 20,
  'heneicos' => 21,
  'docos' => 22,
  'tricos' => 23,
  'tetracos' => 24,
  'pentacos' => 25,
  'hexacos' => 26,
  'heptacos' => 27,
  'octacos' => 28,
  'nonacos' => 29
}

Class Method Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(*args) ⇒ Lipid

Returns a new instance of Lipid.



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# File 'lib/mspire/lipid.rb', line 10

def initialize(*args)
  (@lm_id,@common_name,@systematic_name,@formula,@mass,@category,@main_class,@sub_class,@pubchem_sid, @inchi_key, @kegg_id, @chebi_id, @structure) = args
end

Class Method Details

.members ⇒ Object 



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# File 'lib/mspire/lipid.rb', line 4

def self.members
  [:lm_id,:common_name,:systematic_name,:formula,:mass,:category,:main_class,:sub_class,:pubchem_id,:inchi_key,:kegg_id,:chebi_id,:structure]
end

Instance Method Details

#inspect ⇒ Object 



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# File 'lib/mspire/lipid.rb', line 14

def inspect
  cut_common_name = (common_name.size <= 20) ? common_name : (common_name[0,20]+"...")
  "<#{lm_id}: #{formula}: #{mass} #{cut_common_name}>"
end