Class: NpSearch::Signalp

Inherits:
Object
  • Object
show all
Extended by:
Forwardable
Defined in:
lib/npsearch/signalp.rb

Overview

A class to hold sequence data

Class Method Summary collapse

Class Method Details

.analyse_sequence(seq) ⇒ Object 



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# File 'lib/npsearch/signalp.rb', line 13

def analyse_sequence(seq)
  sp_headers = %w(name cmax cmax_pos ymax ymax_pos smax smax_pos smean d
                  sp dmaxcut networks orf)
  seqs       = setup_analysis(seq)
  sp_results = []
  seqs.each do |sequence|
    sp_results << run_signalp(sequence, sp_headers)
  end
  sp_results.sort_by { |h| h[:d] }.reverse[0]
end