Class: Inferno::Terminology::Tasks::CheckBuiltTerminology

Inherits:
Object
  • Object
show all
Defined in:
lib/inferno/terminology/tasks/check_built_terminology.rb

Constant Summary collapse

NON_UMLS_SYSTEMS = 
[
  'http://hl7.org/fhir/ValueSet/mimetypes',
  'urn:ietf:bcp:13',
  'http://hl7.org/fhir/us/core/ValueSet/simple-language',
  'urn:ietf:bcp:47'
].freeze

Instance Method Summary collapse

Instance Method Details

#expected_manifest ⇒ Object 



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# File 'lib/inferno/terminology/tasks/check_built_terminology.rb', line 46

def expected_manifest
  YAML.load_file(File.join(__dir__, '..', 'expected_manifest.yml'))
end

#mismatched_value_set_message(expected_value_set) ⇒ Object 



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# File 'lib/inferno/terminology/tasks/check_built_terminology.rb', line 86

def mismatched_value_set_message(expected_value_set)
  url = expected_value_set[:url]
  actual_value_set = new_value_set(url)

  "#{url}: Expected codes: #{expected_value_set[:count]} Actual codes: #{actual_value_set&.dig(:count) || 0}"
end

#mismatched_value_sets ⇒ Object 



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# File 'lib/inferno/terminology/tasks/check_built_terminology.rb', line 61

def mismatched_value_sets
  @mismatched_value_sets ||=
    expected_manifest.reject do |expected_value_set|
      url = expected_value_set[:url]
      new_value_set(url) == expected_value_set
    end
end

#new_manifest ⇒ Object 



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# File 'lib/inferno/terminology/tasks/check_built_terminology.rb', line 55

def new_manifest
  return [] unless File.exist? new_manifest_path

  @new_manifest ||= YAML.load_file(new_manifest_path)
end

#new_manifest_path ⇒ Object 



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# File 'lib/inferno/terminology/tasks/check_built_terminology.rb', line 50

def new_manifest_path
  @new_manifest_path ||=
    File.join(Dir.pwd, 'resources', 'terminology', 'validators', 'bloom', 'manifest.yml')
end

#new_value_set(url) ⇒ Object 



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# File 'lib/inferno/terminology/tasks/check_built_terminology.rb', line 74

def new_value_set(url)
  new_manifest.find { |value_set| value_set[:url] == url }
end

#new_value_sets ⇒ Object 



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# File 'lib/inferno/terminology/tasks/check_built_terminology.rb', line 69

def new_value_sets
  @new_value_sets ||=
    new_manifest.reject { |value_set| old_value_set?(value_set[:url]) }
end

#old_value_set?(url) ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/inferno/terminology/tasks/check_built_terminology.rb', line 78

def old_value_set?(url)
  expected_manifest.any? { |value_set| value_set[:url] == url }
end

#only_non_umls_mismatch? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/inferno/terminology/tasks/check_built_terminology.rb', line 82

def only_non_umls_mismatch?
  mismatched_value_sets.all? { |value_set| NON_UMLS_SYSTEMS.include? value_set[:url] }
end

#run ⇒ Object 



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# File 'lib/inferno/terminology/tasks/check_built_terminology.rb', line 14

def run
  if mismatched_value_sets.blank?
    Inferno.logger.info 'Terminology built successfully.'
    return
  end

  if only_non_umls_mismatch?
    Inferno.logger.info <<~NON_UMLS
      Terminology built successfully.

      Some terminology not based on UMLS did not match, but this can be
      a result of these terminologies having a different update schedule
      than UMLS. As long as the actual number of codes is close to the
      expected number, this does not does not reflect a problem with the
      terminology build.
    NON_UMLS
  else
    Inferno.logger.info 'Terminology build results different than expected.'
  end

  mismatched_value_sets.each do |value_set|
    Inferno.logger.info mismatched_value_set_message(value_set)
  end

  return unless new_value_sets.present?

  Inferno.logger.info("\nThe following unexpected value set validators were created:")
  new_value_sets.each do |value_set|
    Inferno.logger.info("#{value_set[:url]}: #{value_set[:count]} codes")
  end
end