Class: Inferno::Terminology::Tasks::ExpandValueSetToFile

Inherits:
Object
  • Object
show all
Defined in:
lib/inferno/terminology/tasks/expand_value_set_to_file.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(vs:, filename:, type:) ⇒ ExpandValueSetToFile

rubocop:disable Naming/MethodParameterName



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# File 'lib/inferno/terminology/tasks/expand_value_set_to_file.rb', line 7

def initialize(vs:, filename:, type:) # rubocop:disable Naming/MethodParameterName
  @value_set_url = vs
  @filename = filename
  @type = type
end

Instance Attribute Details

#filename ⇒ Object (readonly)

Returns the value of attribute filename.



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# File 'lib/inferno/terminology/tasks/expand_value_set_to_file.rb', line 5

def filename
  @filename
end

#type ⇒ Object (readonly)

Returns the value of attribute type.



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# File 'lib/inferno/terminology/tasks/expand_value_set_to_file.rb', line 5

def type
  @type
end

#value_set_url ⇒ Object (readonly)

Returns the value of attribute value_set_url.



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# File 'lib/inferno/terminology/tasks/expand_value_set_to_file.rb', line 5

def value_set_url
  @value_set_url
end

Instance Method Details

#run ⇒ Object 



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# File 'lib/inferno/terminology/tasks/expand_value_set_to_file.rb', line 13

def run
  # JSON is a special case, because we need to add codes from valuesets from several versions
  # We accomplish this by collecting and merging codes from each version
  # Before writing the JSON to a file at the end
  end_vs = nil if type == 'json'

  %w[2023].each do |version|
    Loader.register_umls_db File.join(TEMP_DIR, version, 'umls.db')
    Loader.load_value_sets_from_directory(PACKAGE_DIR, true)
    vs = Repositories::ValueSets.new.find(value_set_url)
    if type == 'json'
      end_vs ||= vs
      end_vs.value_set.merge vs.value_set
    else
      Loader.save_to_file(vs.valueset, filename, type.to_sym)
    end
  end

  File.open("#{filename}.json", 'wb') { |f| f << end_vs.expansion_as_fhir_valueset.to_json } if type == 'json'
end