Module: ONCCertificationG10TestKit::BulkExportValidationTester
- Includes:
- G10Options, ProfileSelector, USCoreTestKit::MustSupportTest
- Defined in:
- lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb
Constant Summary
collapse
- MAX_NUM_COLLECTED_LINES =
100
- MIN_RESOURCE_COUNT =
2
- OMIT_KLASS =
['Medication', 'Location', 'QuestionnaireResponse', 'PractitionerRole'].freeze
- PROFILES_TO_SKIP =
[
'http://hl7.org/fhir/us/core/StructureDefinition/us-core-simple-observation'
].freeze
Constants included
from G10Options
G10Options::BULK_DATA_1, G10Options::BULK_DATA_1_REQUIREMENT, G10Options::BULK_DATA_2, G10Options::BULK_DATA_2_REQUIREMENT, G10Options::SMART_1, G10Options::SMART_1_REQUIREMENT, G10Options::SMART_2, G10Options::SMART_2_REQUIREMENT, G10Options::US_CORE_3, G10Options::US_CORE_3_REQUIREMENT, G10Options::US_CORE_4, G10Options::US_CORE_4_REQUIREMENT, G10Options::US_CORE_5, G10Options::US_CORE_5_REQUIREMENT, G10Options::US_CORE_6, G10Options::US_CORE_6_REQUIREMENT, G10Options::US_CORE_VERSION_NUMBERS
Instance Attribute Summary collapse
Instance Method Summary
collapse
Methods included from G10Options
#us_core_version, #using_us_core_3?, #using_us_core_5?, #using_us_core_6?, #versioned_us_core_module
#extract_profile, #observation_contains_code?, #resource_contains_category?, #select_profile
Instance Attribute Details
Returns the value of attribute metadata.
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 9
def metadata
@metadata
end
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Instance Method Details
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 38
def (use_token)
= { accept: 'application/fhir+ndjson' }
.merge!({ authorization: "Bearer #{bearer_token}" }) if use_token == 'true'
end
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#check_file_request(url) ⇒ Object
rubocop:disable Metrics/CyclomaticComplexity
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 127
def check_file_request(url) line_count = 0
resources = Hash.new { |h, k| h[k] = [] }
process_line = proc do |line|
next unless lines_to_validate.blank? ||
line_count < lines_to_validate.to_i ||
(resource_type == 'Patient' && patient_ids_seen.length < MIN_RESOURCE_COUNT)
line_count += 1
begin
resource = FHIR.from_contents(line)
rescue StandardError
skip "Server response at line \"#{line_count}\" is not a processable FHIR resource."
end
if resource.resourceType != resource_type
assert false, "Resource type \"#{resource.resourceType}\" at line \"#{line_count}\" does not match type " \
"defined in output \"#{resource_type}\""
end
profile_urls = determine_profile(resource)
profile_urls.each do |profile_url|
resources[profile_url] << resource
scratch[:patient_ids_seen] = patient_ids_seen | [resource.id] if resource_type == 'Patient'
profile_with_version = versioned_profile_url(profile_url)
unless resource_is_valid?(resource:, profile_url: profile_with_version)
if first_error.key?(:line_number)
@invalid_resource_count += 1
else
@invalid_resource_count = 1
first_error[:line_number] = line_count
first_error[:messages] = messages.dup
end
end
end
end
= proc { |response|
value = (response[:headers].find { || .name.downcase == 'content-type' })&.value
unless value&.start_with?('application/fhir+ndjson')
skip "Content type must have 'application/fhir+ndjson' but found '#{value}'"
end
}
stream_ndjson(url, (requires_access_token), process_line, )
resources_from_all_files.merge!(resources) do |_key, all_resources, file_resources|
all_resources | file_resources
end
line_count
end
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#determine_profile(resource) ⇒ Object
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 94
def determine_profile(resource)
return [] if resource.resourceType == 'Device' && !predefined_device_type?(resource)
select_profile(resource)
end
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#first_error ⇒ Object
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 30
def first_error
@first_error ||= {}
end
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 18
def metadata_list
@metadata_list ||=
versioned_us_core_module::USCoreTestSuite
.metadata
.select { |metadata| metadata.resource == resource_type }
.reject { |metadata| PROFILES_TO_SKIP.include? metadata.profile_url }
end
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#patient_ids_seen ⇒ Object
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 34
def patient_ids_seen
scratch[:patient_ids_seen] ||= []
end
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 195
def perform_bulk_export_validation
skip_if status_output.blank?, 'Could not verify this functionality when Bulk Status Output is not provided'
skip_if (requires_access_token == 'true' && bearer_token.blank?),
'Could not verify this functionality when Bearer Token is required and not provided'
assert_valid_json(status_output)
file_list = JSON.parse(status_output).select { |file| file['type'] == resource_type }
if file_list.empty?
message = "No #{resource_type} resource file item returned by server."
omit_if (OMIT_KLASS.include? resource_type), "#{message} #{resource_type} resources are optional."
skip message
end
@resources_from_all_files = {}
resource_count = 0
file_list.each do |file|
resource_count += check_file_request(file['url'])
end
process_validation_errors(resource_count)
validate_conformance(resources_from_all_files)
pass "Successfully validated #{resource_count} #{resource_type} resource(s)."
end
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#predefined_device_type?(resource) ⇒ Boolean
rubocop:disable Metrics/CyclomaticComplexity
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 82
def predefined_device_type?(resource) return true if bulk_device_types_in_group.blank?
expected = Set.new(bulk_device_types_in_group.split(',').map(&:strip))
actual = resource&.type&.coding&.filter_map do |coding|
coding.code if coding.system.nil? || coding.system == 'http://snomed.info/sct'
end
(expected & actual).any?
end
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#process_validation_errors(resource_count) ⇒ Object
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 182
def process_validation_errors(resource_count)
return if @invalid_resource_count.nil? || @invalid_resource_count.zero?
first_error_message = "The line number for the first failed resource is #{first_error[:line_number]}."
messages.clear
messages.concat(first_error[:messages])
assert false,
"#{@invalid_resource_count} / #{resource_count} #{resource_type} resources failed profile validation. " \
"#{first_error_message}"
end
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#resources_from_all_files ⇒ Object
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 26
def resources_from_all_files
@resources_from_all_files ||= {}
end
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#stream_ndjson(endpoint, headers, process_chunk_line, process_response) ⇒ Object
rubocop:disable Metrics/CyclomaticComplexity
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 44
def stream_ndjson(endpoint, , process_chunk_line, process_response) hanging_chunk = String.new
process_body = proc { |chunk|
hanging_chunk << chunk
chunk_by_lines = hanging_chunk.lines
hanging_chunk = chunk_by_lines.pop || String.new
chunk_by_lines.each do |elem|
process_chunk_line.call(elem)
end
}
stream(process_body, endpoint, headers:)
max_redirect = 5
while [301, 302, 303, 307].include?(response[:status]) &&
request.('location')&.value.present? &&
max_redirect.positive?
max_redirect -= 1
redirect_url = request.('location')&.value
redirect_url = URI.parse(endpoint).merge(redirect_url).to_s unless redirect_url.start_with?('http')
= .except(:authorization)
stream(process_body, redirect_url, headers: )
end
process_chunk_line.call(hanging_chunk)
process_response.call(response)
end
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 100
def validate_conformance(resources)
metadata_list.each do |meta|
next if resource_type == 'Location'
skip_if resources[meta.profile_url].blank?,
"No #{resource_type} resources found that conform to profile: #{meta.profile_url}."
@metadata = meta
@missing_elements = nil
@missing_slices = nil
@missing_extensions = nil
begin
perform_must_support_test(resources[meta.profile_url])
rescue Inferno::Exceptions::PassException
next
rescue Inferno::Exceptions::SkipException => e
e.message.concat " for `#{meta.profile_url}`"
raise e
end
end
end
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#versioned_profile_url(profile_url) ⇒ Object
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# File 'lib/onc_certification_g10_test_kit/bulk_export_validation_tester.rb', line 121
def versioned_profile_url(profile_url)
profile_version = metadata_list.find { |metadata| metadata.profile_url == profile_url }&.profile_version
profile_version ? "#{profile_url}|#{profile_version}" : profile_url
end
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