Documentation for rgfa (1.3.1)

Alphabetic Index

Namespace Listing A-Z

A

Array
Artifacts (RGFATools)

B

ByteArray (RGFA)

C

CIGAR (RGFA)
Comment (RGFA::Line)
Connectivity (RGFA)
Containment (RGFA::Line)
Containments (RGFA)
CopyNumber (RGFATools)
CustomOptfieldNameError (RGFA::Line)

D

DuplicatedLabelError (RGFA)
DuplicatedOptfieldNameError (RGFA::Line)

E

Error (RGFA::FieldArray)
Error (RGFA)

F

FieldArray (RGFA)
FieldParser (RGFA)
FieldValidator (RGFA)
FieldWriter (RGFA)
FieldnameError (RGFA::Line)
Fixnum
Float
FormatError (RGFA::FieldParser)
FormatError (RGFA::ByteArray)

H

Hash
Header (RGFA::Line)
Headers (RGFA)

I

InconsistentLengthError (RGFA::Line::Segment)
InvalidAttributeError (RGFA::SegmentInfo)
InvalidSizeError (RGFA::SegmentInfo)
InvertibleSegments (RGFATools)

L

Line (RGFA)
LineMissingError (RGFA)
LinearPaths (RGFATools)
LinearPaths (RGFA)
Lines (RGFA)
Link (RGFA::Line)
Links (RGFA)
ListLengthsError (RGFA::Line::Path)
Logger (RGFA)
LoggerSupport (RGFA)

M

Multiplication (RGFA)
Multiplication (RGFATools)

N

NumericArray (RGFA)

O

Object
Operation (RGFA::CIGAR)
OrientedSegment (RGFA)

P

PBubbles (RGFATools)
Path (RGFA::Line)
Paths (RGFA)
PredefinedOptfieldTypeError (RGFA::Line)
ProgressData (RGFA::Logger)

R

S

Segment (RGFA::Line)
SegmentEnd (RGFA)
SegmentEndsPath (RGFA)
SegmentInfo (RGFA)
Segments (RGFA)
Sequence (RGFA)
String
SuperfluousLinks (RGFATools)
Symbol

T

TagMissingError (RGFA::Line)
TypeError (RGFA::NumericArray)
TypeMismatchError (RGFA::FieldArray)

U

UndefinedLengthError (RGFA::Line::Segment)
UnknownDatatype (RGFA::Line)
UnknownDatatypeError (RGFA::FieldParser)
UnknownRecordTypeError (RGFA::Line)

V

ValueError (RGFA::NumericArray)
ValueError (RGFA::CIGAR)
ValueError (RGFA::ByteArray)