Class: SimpleBioC::Passage
- Inherits:
-
Object
- Object
- SimpleBioC::Passage
- Includes:
- LocationAdjuster
- Defined in:
- lib/simple_bioc/passage.rb
Instance Attribute Summary collapse
-
#annotations ⇒ Object
Returns the value of attribute annotations.
-
#document ⇒ Object
readonly
Returns the value of attribute document.
-
#infons ⇒ Object
Returns the value of attribute infons.
-
#offset ⇒ Object
Returns the value of attribute offset.
-
#relations ⇒ Object
Returns the value of attribute relations.
-
#sentences ⇒ Object
Returns the value of attribute sentences.
-
#text ⇒ Object
Returns the value of attribute text.
Instance Method Summary collapse
- #each_relation ⇒ Object
- #find_node(id) ⇒ Object
-
#initialize(parent) ⇒ Passage
constructor
A new instance of Passage.
- #to_s ⇒ Object
Methods included from LocationAdjuster
#adjust_annotation_offsets, choose_offset_candidate, find_all_locations
Constructor Details
#initialize(parent) ⇒ Passage
Returns a new instance of Passage.
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# File 'lib/simple_bioc/passage.rb', line 9 def initialize(parent) @infons = {} @sentences = [] @annotations = [] @relations = [] @document = parent end |
Instance Attribute Details
#annotations ⇒ Object
Returns the value of attribute annotations.
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# File 'lib/simple_bioc/passage.rb', line 6 def annotations @annotations end |
#document ⇒ Object (readonly)
Returns the value of attribute document.
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# File 'lib/simple_bioc/passage.rb', line 7 def document @document end |
#infons ⇒ Object
Returns the value of attribute infons.
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# File 'lib/simple_bioc/passage.rb', line 6 def infons @infons end |
#offset ⇒ Object
Returns the value of attribute offset.
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# File 'lib/simple_bioc/passage.rb', line 6 def offset @offset end |
#relations ⇒ Object
Returns the value of attribute relations.
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# File 'lib/simple_bioc/passage.rb', line 6 def relations @relations end |
#sentences ⇒ Object
Returns the value of attribute sentences.
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# File 'lib/simple_bioc/passage.rb', line 6 def sentences @sentences end |
#text ⇒ Object
Returns the value of attribute text.
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# File 'lib/simple_bioc/passage.rb', line 6 def text @text end |
Instance Method Details
#each_relation ⇒ Object
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# File 'lib/simple_bioc/passage.rb', line 30 def each_relation relations.each{|r| yield r} sentences.each{|s| s.each_relation{|r| yield r}} end |
#find_node(id) ⇒ Object
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# File 'lib/simple_bioc/passage.rb', line 21 def find_node(id) (relations+annotations).each{|n| return n if n.id == id} sentences.each do |s| ret = s.find_node(id) return ret unless ret.nil? end nil end |
#to_s ⇒ Object
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# File 'lib/simple_bioc/passage.rb', line 17 def to_s "Passage @#{offset}: #{text}" end |