Module: Vendor::Gnfinder

Defined in:
lib/vendor/gnfinder.rb,
lib/vendor/gnfinder/name.rb,
lib/vendor/gnfinder/result.rb

Overview

TODO

Verify mode! do this first
   user has manually entered all names - should see matches on playground
   highlight where not

Curate/add mode
 * talk to Hernán about getting `gnfinder` in shell or GRPC
 * flesh out the Name model
 * get José to add `name=` params to new combination
 * get José to add `name=` params to new taxon name
 * bonus - include `source_id=` to auto-cite result

 * Show missmatched classification for match names
 * Show page numbers

Defined Under Namespace

Classes: Name, Result

Class Method Summary collapse

Class Method Details

.finder ⇒ Object 



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# File 'lib/vendor/gnfinder.rb', line 19

def self.finder
  ::Gnfinder::Client.new
end

.massage_text(text) ⇒ Object 



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# File 'lib/vendor/gnfinder.rb', line 37

def self.massage_text(text)
  # TODO: add a flag to the report somewhere
  if !text.valid_encoding?
    text = text.encode('UTF-8', 'binary', invalid: :replace, undef: :replace, replace: '')
  end

  text.gsub!(/sp\.nov/, 'sp. nov') # Ensure there is a space b/w
  text.gsub!(/sp\.nov\./, 'sp. nov. ') # Ensure there is space after
  text.gsub!(/sp\.nov\./, ' sp. nov.') # Ensure there is space before

  text
end

.result(text, verification: true, tokens: 3, language: nil, detect_language: true, sources: [ ], project_id: []) ⇒ Object 



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# File 'lib/vendor/gnfinder.rb', line 23

def self.result(text, verification: true, tokens: 3, language: nil, detect_language: true, sources: [ ], project_id: [])
  opts = {
    verification:,
    words_around: tokens,
    sources:
  }
  opts[:language] = 'detect' if detect_language
  opts[:language] = language unless language.nil?

  text = massage_text(text)

  ::Vendor::Gnfinder::Result.new(finder.find_names(text, opts), project_id)
end