Class: MiGA::Cli::Action::Browse

Inherits:
MiGA::Cli::Action show all
Defined in:
lib/miga/cli/action/browse.rb

Overview

Action: miga browse

Constant Summary

Constants included from MiGA

MiGA::CITATION, VERSION, VERSION_DATE, VERSION_NAME

Instance Attribute Summary

Attributes inherited from MiGA::Cli::Action

#cli

Instance Method Summary collapse

Methods inherited from MiGA::Cli::Action

#complete, #empty_action, #initialize, #launch, load, #name

Methods inherited from MiGA

CITATION, CITATION_ARRAY, DEBUG, DEBUG_OFF, DEBUG_ON, DEBUG_TRACE_OFF, DEBUG_TRACE_ON, FULL_VERSION, LONG_VERSION, VERSION, VERSION_DATE, #advance, debug?, debug_trace?, initialized?, #like_io?, #num_suffix, rc_path, #result_files_exist?, #say

Methods included from MiGA::Common::Path

#root_path, #script_path

Methods included from MiGA::Common::Format

#clean_fasta_file, #seqs_length, #tabulate

Methods included from MiGA::Common::Net

#download_file_ftp, #known_hosts, #remote_connection

Methods included from MiGA::Common::SystemCall

#run_cmd, #run_cmd_opts

Constructor Details

This class inherits a constructor from MiGA::Cli::Action

Instance Method Details

#parse_cli ⇒ Object 



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# File 'lib/miga/cli/action/browse.rb', line 7

def parse_cli
  cli.parse do |opt|
    cli.defaults = { open: true }
    cli.opt_object(opt, [:project])
  end
end

#perform ⇒ Object 



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# File 'lib/miga/cli/action/browse.rb', line 14

def perform
  p = cli.load_project
  create_empty_page(p)
  generate_project_page(p)
  cli.say 'Creating dataset pages'
  cli.load_project.each_dataset do |d|
    generate_dataset_page(p, d)
  end
  generate_datasets_index(p)
  cli.say "Open in your browser: #{File.join(p.path, 'index.html')}"
end