Class: MiGA::Cli::Action::Edit

Inherits:
MiGA::Cli::Action show all
Defined in:
lib/miga/cli/action/edit.rb

Constant Summary

Constants included from MiGA

MiGA::CITATION, VERSION, VERSION_DATE, VERSION_NAME

Instance Attribute Summary

Attributes inherited from MiGA::Cli::Action

#cli

Instance Method Summary collapse

Methods inherited from MiGA::Cli::Action

#complete, #empty_action, #initialize, #launch, load, #name

Methods inherited from MiGA

CITATION, CITATION_ARRAY, DEBUG, DEBUG_OFF, DEBUG_ON, DEBUG_TRACE_OFF, DEBUG_TRACE_ON, FULL_VERSION, LONG_VERSION, VERSION, VERSION_DATE, #advance, debug?, debug_trace?, initialized?, #like_io?, #num_suffix, rc_path, #result_files_exist?, #say

Methods included from MiGA::Common::Path

#root_path, #script_path

Methods included from MiGA::Common::Format

#clean_fasta_file, #seqs_length, #tabulate

Methods included from MiGA::Common::Net

#download_file_ftp, #known_hosts, #remote_connection

Methods included from MiGA::Common::SystemCall

#run_cmd, #run_cmd_opts

Constructor Details

This class inherits a constructor from MiGA::Cli::Action

Instance Method Details

#parse_cli ⇒ Object 



7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
 
# File 'lib/miga/cli/action/edit.rb', line 7

def parse_cli
  cli.parse do |opt|
    cli.opt_object(opt, [:project, :dataset_opt])
    opt.on(
      '-m', '--metadata STRING',
      'Metadata as key-value pairs separated by = and delimited by comma',
      'Values are saved as strings except for booleans (true / false) or nil'
    ) { |v| cli[:metadata] = v }
    opt.on(
      '--activate',
      'Activate dataset; requires -D'
    ) { |v| cli[:activate] = v }
    opt.on(
      '--inactivate [reason]',
      'Inactivate dataset; requires -D',
      'The argument is optional: reason to inactivate dataset'
    ) { |v| cli[:activate] = false ; cli[:reason] = v }
  end
end

#perform ⇒ Object 



27
28
29
30
31
32
33
34
35
36
37
 
# File 'lib/miga/cli/action/edit.rb', line 27

def perform
  obj = cli.load_project_or_dataset
  unless cli[:activate].nil?
    cli.ensure_par(
      { dataset: '-D' },
      '%<name>s is mandatory with --[in-]activate: please provide %<flag>s'
    )
    cli[:activate] ? obj.activate! : obj.inactivate!(cli[:reason])
  end
  cli.add_metadata(obj)
end