Class: Pocolog::StreamAligner
- Inherits:
-
Object
- Object
- Pocolog::StreamAligner
- Defined in:
- lib/pocolog/stream_aligner.rb
Defined Under Namespace
Classes: IndexEntry
Instance Attribute Summary collapse
-
#base_time ⇒ Object
readonly
Returns the value of attribute base_time.
-
#full_index ⇒ Array<IndexEntry>
readonly
The full aligned index.
-
#global_pos_first_sample ⇒ Object
readonly
A per-stream mapping from the stream index to the global position of the last of this stream’s samples.
-
#global_pos_last_sample ⇒ Object
readonly
A per-stream mapping from the stream index to the global position of the first of this stream’s samples.
-
#interval_lg ⇒ (Time,Time)
readonly
The time of the first and last samples in the stream, in logical time.
-
#sample_index ⇒ Object
readonly
The index of the current sample.
-
#size ⇒ Integer
readonly
Returns the number of samples one can get out of this stream aligner.
-
#streams ⇒ Object
readonly
Returns the value of attribute streams.
-
#use_rt ⇒ Object
readonly
Returns the value of attribute use_rt.
-
#use_sample_time ⇒ Object
readonly
Returns the value of attribute use_sample_time.
Instance Method Summary collapse
-
#add_streams(*streams) ⇒ Object
Add new streams to the alignment.
- #advance ⇒ (Integer,Time)
-
#count_samples ⇒ Object
Provided for backward compatibility only.
-
#each(do_rewind = true) {|stream_idx, time, sample| ... } ⇒ Object
Enumerate all samples in this stream.
-
#empty? ⇒ Boolean
Whether there are no samples in the aligner.
-
#eof? ⇒ Boolean
Tests whether reading the next sample will return something.
-
#export_to_file(file, start_index = 0, end_index = size, &block) ⇒ Object
exports all streams to a new log file if no start and end index is given all data are exported otherwise the data are truncated according to the given global indexes.
-
#find_first_stream_sample_after(position_global, stream) ⇒ Object
Returns the stream-local index of the first sample strictly after the sample at the given global position.
-
#find_first_stream_sample_at_or_after(position_global, stream) ⇒ Object
Returns the stream-local index of the first sample that is either at or just after the given global position.
-
#first_sample_pos(stream) ⇒ nil, Integer
Returns the global sample position of the first sample of the given stream.
-
#initialize(use_rt = false, *streams) ⇒ StreamAligner
constructor
A new instance of StreamAligner.
-
#last_sample_pos(stream) ⇒ nil, Integer
Returns the global sample position of the last sample of the given stream.
-
#next ⇒ (Time,Time,(Integer,Typelib::Type))?
Defined for compatibility with DataStream#next.
- #pretty_print(pp) ⇒ Object
-
#previous ⇒ (Time,Time,(Integer,Typelib::Type))?
Defined for compatibility with DataStream#previous.
-
#raw_each(do_rewind = true) {|stream_idx, time, sample| ... } ⇒ Object
Enumerate all samples in this stream.
-
#remove_streams(*streams) ⇒ Object
Remove the given streams in the stream aligner.
-
#rewind ⇒ Object
Rewinds the stream aligner to the position before the first sample.
-
#sample_info(stream_idx) ⇒ (DataStream,Integer)?
Returns the information necessary to read a stream’s sample later.
-
#seek(pos, read_data = true) ⇒ Object
Seek at the given position or time.
-
#seek_to_index_entry(entry, read_data = true) ⇒ Object
private
This is a private helper for #seek_to_time and #seek_to_pos.
-
#seek_to_pos(pos, read_data = true) ⇒ (Integer,Time[,Typelib::Type])
Seeks to the sample whose global position is pos.
-
#seek_to_time(time, read_data = true) ⇒ (Integer,Time[,Typelib::Type])
Seek to the first sample after the given time.
-
#single_data(index, sample = nil) ⇒ Object?
Returns the current data sample for the given stream index note stream index is the index of the data stream, not the search index !.
-
#single_raw_data(index, sample = nil) ⇒ Typelib::Type
Returns the current raw data sample for the given stream index note stream index is the index of the data stream, not the search index !.
-
#step ⇒ (Integer,Time,Typelib::Type)
Advances one step in the joint stream, and returns the index of the updated stream as well as the time and the data sample.
-
#step_back ⇒ (Integer,Time,Typelib::Type)
Decrements one step in the joint stream, an returns the index of the updated stream, its time as well as the sample data.
-
#stream_by_index(stream_idx) ⇒ DataStream
Return the stream object at the given stream index.
-
#stream_index_for_name(name) ⇒ Integer?
Returns the stream index of the stream with this name.
-
#stream_index_for_stream(stream) ⇒ Object
Returns the stream index for the given stream.
-
#stream_index_for_type(type) ⇒ Integer?
Returns the stream index of the stream whose type has this name.
-
#time ⇒ Time
Returns the time of the last played back sample.
- #time_interval ⇒ Object
-
#update_interval_lg ⇒ Object
private
Update #interval_lg based on the information currently in #full_index.
Constructor Details
#initialize(use_rt = false, *streams) ⇒ StreamAligner
Returns a new instance of StreamAligner.
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# File 'lib/pocolog/stream_aligner.rb', line 61 def initialize(use_rt = false, *streams) @use_sample_time = use_rt == :use_sample_time @use_rt = use_rt @global_pos_first_sample = Array.new @global_pos_last_sample = Array.new @size = 0 @interval_lg = Array.new @base_time = nil @stream_state = Array.new @streams = Array.new @sample_index = -1 add_streams(*streams) end |
Instance Attribute Details
#base_time ⇒ Object (readonly)
Returns the value of attribute base_time.
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# File 'lib/pocolog/stream_aligner.rb', line 6 def base_time @base_time end |
#full_index ⇒ Array<IndexEntry> (readonly)
The full aligned index
This is a mapping from a global position in the aligned stream to information about the sample at that stream
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# File 'lib/pocolog/stream_aligner.rb', line 49 def full_index @full_index end |
#global_pos_first_sample ⇒ Object (readonly)
A per-stream mapping from the stream index to the global position of the last of this stream’s samples
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# File 'lib/pocolog/stream_aligner.rb', line 35 def global_pos_first_sample @global_pos_first_sample end |
#global_pos_last_sample ⇒ Object (readonly)
A per-stream mapping from the stream index to the global position of the first of this stream’s samples
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# File 'lib/pocolog/stream_aligner.rb', line 41 def global_pos_last_sample @global_pos_last_sample end |
#interval_lg ⇒ (Time,Time) (readonly)
The time of the first and last samples in the stream, in logical time
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# File 'lib/pocolog/stream_aligner.rb', line 54 def interval_lg @interval_lg end |
#sample_index ⇒ Object (readonly)
The index of the current sample
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# File 'lib/pocolog/stream_aligner.rb', line 29 def sample_index @sample_index end |
#size ⇒ Integer (readonly)
Returns the number of samples one can get out of this stream aligner
This is the sum of samples available on each of the underlying streams
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# File 'lib/pocolog/stream_aligner.rb', line 21 def size @size end |
#streams ⇒ Object (readonly)
Returns the value of attribute streams.
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# File 'lib/pocolog/stream_aligner.rb', line 8 def streams @streams end |
#use_rt ⇒ Object (readonly)
Returns the value of attribute use_rt.
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# File 'lib/pocolog/stream_aligner.rb', line 3 def use_rt @use_rt end |
#use_sample_time ⇒ Object (readonly)
Returns the value of attribute use_sample_time.
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# File 'lib/pocolog/stream_aligner.rb', line 4 def use_sample_time @use_sample_time end |
Instance Method Details
#add_streams(*streams) ⇒ Object
Add new streams to the alignment
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# File 'lib/pocolog/stream_aligner.rb', line 105 def add_streams(*streams) return if streams.empty? if sample_index != -1 if eof? eof = true current_entry = full_index[-1] else current_entry = full_index[sample_index] end end streams_size = streams.inject(0) { |s, stream| s + stream.size } size = (@size += streams_size) Pocolog.info "adding #{streams.size} streams with #{streams_size} samples" tic = Time.now unless base_time @base_time = streams.map { |s| s.stream_index.base_time }.compact.min end sort_index = [] all_streams = (@streams + streams) if base_time all_streams.each_with_index do |stream, i| stream.stream_index.base_time = base_time times = stream.stream_index.raw_each_time.map { |t| t * size + i } sort_index.concat(times) end end Pocolog.info "concatenated indexes in #{"%.2f" % [Time.now - tic]} seconds" tic = Time.now sort_index.sort! @global_pos_first_sample = Array.new @global_pos_last_sample = Array.new current_positions = Array.new(all_streams.size, 0) @full_index = Array.new(size) position_global = 0 for sort_code in sort_index time = sort_code / size stream_index = sort_code % size position_in_stream = current_positions[stream_index] current_positions[stream_index] = position_in_stream + 1 entry = IndexEntry.new(time, stream_index, position_in_stream, position_global) global_pos_first_sample[entry.stream_number] ||= position_global global_pos_last_sample[entry.stream_number] = position_global @full_index[position_global] = entry position_global += 1 end @streams = all_streams update_interval_lg Pocolog.info "built full index in #{"%.2f" % [Time.now - tic]} seconds" if current_entry @sample_index = @full_index. index do |e| e.stream_number == current_entry.stream_number && e.position_in_stream == current_entry.position_in_stream end if eof step end end end |
#advance ⇒ (Integer,Time)
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# File 'lib/pocolog/stream_aligner.rb', line 400 def advance if eof? @sample_index = size return end seek_to_pos(@sample_index + 1, false) end |
#count_samples ⇒ Object
Provided for backward compatibility only
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# File 'lib/pocolog/stream_aligner.rb', line 11 def count_samples Pocolog.warn "StreamAligner#count_samples is deprecated. Use #size instead" size end |
#each(do_rewind = true) {|stream_idx, time, sample| ... } ⇒ Object
Enumerate all samples in this stream
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# File 'lib/pocolog/stream_aligner.rb', line 669 def each(do_rewind = true) return enum_for(__method__, do_rewind) unless block_given? raw_each(do_rewind) do |index, time, raw_sample| yield(index, time, Typelib.to_ruby(raw_sample)) end end |
#empty? ⇒ Boolean
Whether there are no samples in the aligner
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# File 'lib/pocolog/stream_aligner.rb', line 24 def empty? size == 0 end |
#eof? ⇒ Boolean
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# File 'lib/pocolog/stream_aligner.rb', line 90 def eof? sample_index >= size - 1 end |
#export_to_file(file, start_index = 0, end_index = size, &block) ⇒ Object
exports all streams to a new log file if no start and end index is given all data are exported otherwise the data are truncated according to the given global indexes
the block is called for each sample to update a custom progress bar if the block returns 1 the export is canceled
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# File 'lib/pocolog/stream_aligner.rb', line 465 def export_to_file(file,start_index=0,end_index=size,&block) output = Pocolog::Logfiles.create(file) streams.each do |s| stream_start_index = first_sample_pos(s) stream_end_index = last_sample_pos(s) + 1 # Ignore the stream if it is empty next if !stream_start_index # Ignore the stream if there are no samples intersecting with # the required interval next if start_index >= stream_end_index || end_index <= stream_start_index stream_start_index = [start_index, stream_start_index].max stream_end_index = [end_index, stream_end_index].min first_stream_pos = find_first_stream_sample_at_or_after( stream_start_index, s) last_stream_pos = find_first_stream_sample_at_or_after( stream_end_index, s) next if first_stream_pos == last_stream_pos index = 0 number_of_samples = stream_end_index-stream_start_index+1 stream_output = output.create_stream(s.name, s.type) result = s.copy_to(first_stream_pos,last_stream_pos,stream_output) do |i| if block index +=1 block.call(index,number_of_samples) end end break if !result end output.close end |
#find_first_stream_sample_after(position_global, stream) ⇒ Object
Returns the stream-local index of the first sample strictly after the sample at the given global position
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# File 'lib/pocolog/stream_aligner.rb', line 522 def find_first_stream_sample_after(position_global, stream) if !(entry = full_index[position_global]) return stream.size end stream_number = stream_index_for_stream(stream) # First things first, if entry is a sample of stream, we just have # to go forward by one if entry.stream_number == stream_number return entry.position_in_stream + 1 end # Otherwise, we need to search in the stream time = entry.time search_pos = stream.stream_index.sample_number_by_internal_time(time) if search_pos == stream.size return search_pos end # If the sample we found has the same time than the entry at # position_global, We now have to figure out whether it is before or # after position global # # We do a linear search in all samples that have the same time than # the reference time. This basically assumes that you don't have a # million samples with the same time. I believe it fair. search_time = stream.stream_index.internal_time_by_sample_number(search_pos) if search_time != time return search_pos end while entry && entry.time == time if entry.stream_number == stream_number return entry.position_in_stream end entry = @full_index[position_global += 1] end return search_pos + 1 end |
#find_first_stream_sample_at_or_after(position_global, stream) ⇒ Object
Returns the stream-local index of the first sample that is either at or just after the given global position
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# File 'lib/pocolog/stream_aligner.rb', line 504 def find_first_stream_sample_at_or_after(position_global, stream) if !(entry = full_index[position_global]) return stream.size end stream_number = stream_index_for_stream(stream) if entry.stream_number == stream_number return entry.position_in_stream end find_first_stream_sample_after(position_global, stream) end |
#first_sample_pos(stream) ⇒ nil, Integer
Returns the global sample position of the first sample of the given stream
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# File 'lib/pocolog/stream_aligner.rb', line 576 def first_sample_pos(stream) if stream.kind_of?(DataStream) stream = validate_stream_index_from_stream(stream) end @global_pos_first_sample[stream] end |
#last_sample_pos(stream) ⇒ nil, Integer
Returns the global sample position of the last sample of the given stream
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# File 'lib/pocolog/stream_aligner.rb', line 588 def last_sample_pos(stream) if stream.kind_of?(DataStream) stream = validate_stream_index_from_stream(stream) end @global_pos_last_sample[stream] end |
#next ⇒ (Time,Time,(Integer,Typelib::Type))?
Defined for compatibility with DataStream#next
Goes one sample further and returns the sample’s logical and real times as well as the stream index and the sample data
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# File 'lib/pocolog/stream_aligner.rb', line 428 def next stream_index, time, data = step if stream_index return time, time, [stream_index, data] end end |
#pretty_print(pp) ⇒ Object
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# File 'lib/pocolog/stream_aligner.rb', line 448 def pretty_print(pp) pp.text "Stream aligner with #{streams.size} streams and #{size} samples" pp.nest(2) do pp.breakable pp.seplist(streams.each_with_index) do |s, i| pp.text "[#{i}] " s.pretty_print(pp) end end end |
#previous ⇒ (Time,Time,(Integer,Typelib::Type))?
Defined for compatibility with DataStream#previous
Goes back one sample and returns the sample’s logical and real times as well as the stream index and the sample data
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# File 'lib/pocolog/stream_aligner.rb', line 441 def previous stream_index, time, data = step_back if stream_index return time, time, [stream_index, data] end end |
#raw_each(do_rewind = true) {|stream_idx, time, sample| ... } ⇒ Object
Enumerate all samples in this stream
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# File 'lib/pocolog/stream_aligner.rb', line 653 def raw_each(do_rewind = true) return enum_for(__method__, do_rewind) unless block_given? rewind if do_rewind while (stream_idx, time = advance) yield(stream_idx, time, single_raw_data(stream_idx)) end end |
#remove_streams(*streams) ⇒ Object
Remove the given streams in the stream aligner
The index-to-stream mapping changes after this. Refer to #streams to map indexes to streams
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# File 'lib/pocolog/stream_aligner.rb', line 180 def remove_streams(*streams) # First, build a map of the current stream indexes to the new # stream indexes stream_indexes = Array.new for_removal = Array.new streams.each do |s| s_index = stream_index_for_stream(s) stream_indexes << s_index for_removal[s_index] = true end index_map = Array.new new_index = 0 self.streams.size.times do |stream_index| if for_removal[stream_index] index_map[stream_index] = nil else index_map[stream_index] = new_index new_index += 1 end end if eof? eof = true elsif sample_index != -1 current_entry = full_index[sample_index] changed_sample = for_removal[current_entry.stream_number] end # Then, transform the index accordingly @global_pos_first_sample = Array.new @global_pos_last_sample = Array.new global_position = 0 @full_index = full_index.find_all do |entry| if current_entry && (current_entry == entry) @sample_index = global_position current_entry = nil # speedup comparison for the rest of the filtering end if new_index = index_map[entry.stream_number] global_pos_first_sample[new_index] ||= global_position global_pos_last_sample[new_index] = global_position entry.position_global = global_position entry.stream_number = new_index global_position += 1 end end @stream_state.clear if @full_index.empty? @sample_index = -1 elsif eof @sample_index = size elsif @sample_index != -1 sample_info = seek_to_pos(@sample_index, false) end # Remove the streams, and update the global attributes stream_indexes.reverse.each do |i| s = @streams.delete_at(i) @size -= s.size end update_interval_lg if sample_info && changed_sample && (sample_index != full_index.size) return *sample_info, single_data(sample_info[0]) end end |
#rewind ⇒ Object
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# File 'lib/pocolog/stream_aligner.rb', line 97 def rewind @sample_index = -1 nil end |
#sample_info(stream_idx) ⇒ (DataStream,Integer)?
Returns the information necessary to read a stream’s sample later
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# File 'lib/pocolog/stream_aligner.rb', line 611 def sample_info(stream_idx) if state = @stream_state[stream_idx] return streams[stream_idx], state.position_in_stream end end |
#seek(pos, read_data = true) ⇒ Object #seek(time, read_data = true) ⇒ Object
Seek at the given position or time
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# File 'lib/pocolog/stream_aligner.rb', line 270 def seek(pos, read_data = true) if pos.kind_of?(Time) seek_to_time(pos, read_data) else seek_to_pos(pos, read_data) end end |
#seek_to_index_entry(entry, read_data = true) ⇒ Object
This method is part of a private API. You should avoid using this method if possible, as it may be removed or be changed in the future.
This is a private helper for #seek_to_time and #seek_to_pos. It seeks the stream aligner to the given global sample
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# File 'lib/pocolog/stream_aligner.rb', line 319 def seek_to_index_entry(entry, read_data = true) if !entry @sample_index = size return end @sample_index = entry.position_global stream_idx = entry.stream_number @stream_state[stream_idx] = entry if read_data return stream_idx, time, single_data(stream_idx) else return stream_idx, time end end |
#seek_to_pos(pos, read_data = true) ⇒ (Integer,Time[,Typelib::Type])
Seeks to the sample whose global position is pos
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# File 'lib/pocolog/stream_aligner.rb', line 302 def seek_to_pos(pos, read_data = true) if empty? raise RangeError, "empty stream" elsif pos < 0 || pos > size raise RangeError, "#{pos} is out of bounds [0..#{size}]." end seek_to_index_entry(@full_index[pos], read_data) end |
#seek_to_time(time, read_data = true) ⇒ (Integer,Time[,Typelib::Type])
Seek to the first sample after the given time
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# File 'lib/pocolog/stream_aligner.rb', line 284 def seek_to_time(time, read_data = true) if empty? raise RangeError, "#{time} is out of bounds, the stream is empty" elsif time < interval_lg[0] || time > interval_lg[1] raise RangeError, "#{time} is out of bounds valid interval #{interval_lg[0]} to #{interval_lg[1]}" end target_time = StreamIndex.time_to_internal(time, base_time) entry = @full_index.bsearch { |e| e.time >= target_time } seek_to_index_entry(entry, read_data) end |
#single_data(index, sample = nil) ⇒ Object?
Returns the current data sample for the given stream index note stream index is the index of the data stream, not the search index !
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# File 'lib/pocolog/stream_aligner.rb', line 625 def single_data(index, sample = nil) if (raw = single_raw_data(index, sample)) return Typelib.to_ruby(raw) end end |
#single_raw_data(index, sample = nil) ⇒ Typelib::Type
Returns the current raw data sample for the given stream index note stream index is the index of the data stream, not the search index !
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# File 'lib/pocolog/stream_aligner.rb', line 639 def single_raw_data(index, sample = nil) stream, position = sample_info(index) if stream stream.read_one_raw_data_sample(position) end end |
#step ⇒ (Integer,Time,Typelib::Type)
Advances one step in the joint stream, and returns the index of the updated stream as well as the time and the data sample
The associated data sample can also be retrieved by single_data(stream_idx)
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# File 'lib/pocolog/stream_aligner.rb', line 384 def step stream_idx, time = advance if stream_idx return stream_idx, time, single_data(stream_idx) end end |
#step_back ⇒ (Integer,Time,Typelib::Type)
Decrements one step in the joint stream, an returns the index of the updated stream, its time as well as the sample data
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# File 'lib/pocolog/stream_aligner.rb', line 413 def step_back if @sample_index == 0 @sample_index = -1 return nil end seek_to_pos(sample_index - 1) end |
#stream_by_index(stream_idx) ⇒ DataStream
Return the stream object at the given stream index
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# File 'lib/pocolog/stream_aligner.rb', line 339 def stream_by_index(stream_idx) @streams[stream_idx] end |
#stream_index_for_name(name) ⇒ Integer?
Returns the stream index of the stream with this name
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# File 'lib/pocolog/stream_aligner.rb', line 352 def stream_index_for_name(name) streams.index { |s| s.name == name } end |
#stream_index_for_stream(stream) ⇒ Object
Returns the stream index for the given stream
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# File 'lib/pocolog/stream_aligner.rb', line 344 def stream_index_for_stream(stream) streams.index(stream) end |
#stream_index_for_type(type) ⇒ Integer?
Returns the stream index of the stream whose type has this name
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# File 'lib/pocolog/stream_aligner.rb', line 361 def stream_index_for_type(type) if type.respond_to?(:name) type = type.name end match_i = streams.index { |s| s.type.name == type } if match_i rmatch_i = streams.rindex { |s| s.type.name == type } if match_i != rmatch_i raise ArgumentError, "There exists more than one stream with type #{type}" end match_i end end |
#time ⇒ Time
Returns the time of the last played back sample
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# File 'lib/pocolog/stream_aligner.rb', line 80 def time if (sample_index != -1) && (entry = full_index[sample_index]) StreamIndex.time_from_internal(entry.time, base_time) end end |
#time_interval ⇒ Object
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# File 'lib/pocolog/stream_aligner.rb', line 56 def time_interval Pocolog.warn_deprecated "StreamAligner#time_interval is deprecated in favor of #interval_lg" interval_lg end |
#update_interval_lg ⇒ Object
This method is part of a private API. You should avoid using this method if possible, as it may be removed or be changed in the future.
Update #interval_lg based on the information currently in #full_index
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# File 'lib/pocolog/stream_aligner.rb', line 253 def update_interval_lg if full_index.empty? @interval_lg = [] else @interval_lg = [ StreamIndex.time_from_internal(full_index.first.time, base_time), StreamIndex.time_from_internal(full_index.last.time, base_time) ] end end |