Class List

Classes Methods Files

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Top Level Namespace
Array < ObjectTop Level Namespace
BioDSLTop Level Namespace
- AddKey < ObjectBioDSL
- AlignSeqMothur < ObjectBioDSL
- AmbiguityBioDSL
- AnalyzeResidueDistribution < ObjectBioDSL
- Assemble < ObjectBioDSL
- AssemblePairs < ObjectBioDSL
- AssembleSeqIdba < ObjectBioDSL
- AssembleSeqRay < ObjectBioDSL
  - N50 < StructBioDSL::AssembleSeqRay
- AssembleSeqSpades < ObjectBioDSL
- AuxHelperBioDSL
- BackTrackBioDSL
  - Match < ObjectBioDSL::BackTrack
- BackTrackError < StandardErrorBioDSL
- CAry < ObjectBioDSL
- CAryError < StandardErrorBioDSL
- CSV < ObjectBioDSL
  - IO < FilesysBioDSL::CSV
- CSVError < StandardErrorBioDSL
- Channel < ObjectBioDSL
- ClassifySeq < ObjectBioDSL
- ClassifySeqMothur < ObjectBioDSL
- ClipPrimer < ObjectBioDSL
- ClusterOtus < ObjectBioDSL
- CollapseOtus < ObjectBioDSL
- CollectOtus < ObjectBioDSL
- Command < ObjectBioDSL
- CommandsBioDSL
- ComplementSeq < ObjectBioDSL
- ConfigBioDSL
- Count < ObjectBioDSL
- CountValues < ObjectBioDSL
- DegapSeq < ObjectBioDSL
- DereplicateSeq < ObjectBioDSL
- DigestBioDSL
- Dump < ObjectBioDSL
- DynamicBioDSL
  - Match < StructBioDSL::Dynamic
- DynamicError < StandardErrorBioDSL
- EmailHelperBioDSL
- Fasta < ObjectBioDSL
  - IO < FilesysBioDSL::Fasta
- FastaError < StandardErrorBioDSL
- Fastq < FilesysBioDSL
  - IO < FilesysBioDSL::Fastq
- FastqError < StandardErrorBioDSL
- Filesys < ObjectBioDSL
- FilesysError < StandardErrorBioDSL
- FilterRrna < ObjectBioDSL
- Fork < ObjectBioDSL
- Genecall < ObjectBioDSL
- Grab < ObjectBioDSL
- Hamming < ObjectBioDSL
- HistoryHelperBioDSL
- HomopolymerBioDSL
  - Homopolymer < StructBioDSL::Homopolymer
- HomopolymerError < StandardErrorBioDSL
- HtmlReport < ObjectBioDSL
- IndexTaxonomy < ObjectBioDSL
- KmerBioDSL
- KmerError < StandardErrorBioDSL
- Levenshtein < ObjectBioDSL
- LogHelperBioDSL
- MaskSeq < ObjectBioDSL
- MathBioDSL
- MeanScores < ObjectBioDSL
- MergePairSeq < ObjectBioDSL
- MergeTable < ObjectBioDSL
- MergeValues < ObjectBioDSL
- Mummer < ObjectBioDSL
  - Match < StructBioDSL::Mummer
- OptionsHelperBioDSL
- Pipeline < ObjectBioDSL
- PlotHeatmap < ObjectBioDSL
- PlotHistogram < ObjectBioDSL
- PlotMatches < ObjectBioDSL
- PlotResidueDistribution < ObjectBioDSL
- PlotScores < ObjectBioDSL
- Random < ObjectBioDSL
- ReadFasta < ObjectBioDSL
- ReadFastq < ObjectBioDSL
- ReadTable < ObjectBioDSL
- ReverseSeq < ObjectBioDSL
- Seq < ObjectBioDSL
  - Orf < StructBioDSL::Seq
- SeqError < StandardErrorBioDSL
- Serializer < ObjectBioDSL
- SliceAlign < ObjectBioDSL
  - PosIndex < ObjectBioDSL::SliceAlign
- SliceSeq < ObjectBioDSL
- Sort < ObjectBioDSL
- SplitPairSeq < ObjectBioDSL
- SplitValues < ObjectBioDSL
- StatusHelperBioDSL
- Stream < ObjectBioDSL
- TaxonomyBioDSL
  - Index < ObjectBioDSL::Taxonomy
    TaxNode < ObjectBioDSL::Taxonomy::Index
  - Search < ObjectBioDSL::Taxonomy
    Node < StructBioDSL::Taxonomy::Search
    Result < StructBioDSL::Taxonomy::Search
    TaxPath < ObjectBioDSL::Taxonomy::Search
- TaxonomyError < StandardErrorBioDSL
- TmpDirBioDSL
- TranslateBioDSL
- TrimBioDSL
- TrimError < StandardErrorBioDSL
- TrimPrimer < ObjectBioDSL
- TrimSeq < ObjectBioDSL
- UchimeRef < ObjectBioDSL
- Uclust < ObjectBioDSL
- UniqueValues < ObjectBioDSL
- Usearch < ObjectBioDSL
  - IO < FilesysBioDSL::Usearch
- UsearchError < StandardErrorBioDSL
- UsearchGlobal < ObjectBioDSL
- UsearchLocal < ObjectBioDSL
- WriteFasta < ObjectBioDSL
- WriteFastq < ObjectBioDSL
- WriteTable < ObjectBioDSL
- WriteTree < ObjectBioDSL
Numeric < ObjectTop Level Namespace
String < ObjectTop Level Namespace