Method List
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DB_load ID
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GDS_info GEO
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GPL_datasets GEO::Eutils
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GPL_id_fields GEO
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GPL_info GEO
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GSE_dataset? GEO::Eutils
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GSE_info GEO
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GSM_info GEO
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OBA Annotations::UMLS
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adjust_hash! FDR
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adjust_native FDR
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analysis Annotations::GO::Genecodis::Local
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analysis Annotations::GO::Genecodis::WS
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annotations Annotations
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average Score
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clean GEO
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#clean FDRTest
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clean CustomDS
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combine Score
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compare Annotations
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complete_positions MARQ
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consecutive? GEO
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#copy FDRTest
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#count_smaller Array
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customdir CustomDS
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dataset_path MARQ
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dataset_path GEO
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dataset_platform GEO
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dataset_positions MARQ::GEORQ
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dataset_scores MARQ::GEORQ
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datasets CustomDS
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dna_sequence? GEO
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draw_hits Score
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draw_hits MARQ::GEORQ
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driver Annotations::GO::Genecodis::WS
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enrichment_hypergeometric Annotations
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enrichment_rank Annotations
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exp2gds Annotations
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fix_GSE_ids GEO
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get_GDS GEO
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get_GPL GEO
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get_GSE GEO
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get_genes Annotations::GO
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get_genes_nth Annotations::GO
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get_genes_old Annotations::GO
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get_soft GEO
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guessIds GEO
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has_cross_platform? CustomDS
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has_cross_platform? MARQ
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#hash_code String
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id_position ID
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info CustomDS
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is_cross_platform? CustomDS
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is_cross_platform? MARQ
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numerical? GEO
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organism CustomDS
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organism_platforms MARQ
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organism_platforms GEO::Eutils
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path CustomDS
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permutations Score
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permutations RankProduct
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permutations_full RankProduct
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platform_entries MADB::GEO
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platform_entries MADB::CustomDS
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platform_organism MARQ
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platform_path GEO
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platform_scores_up_down MARQ::GEORQ
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platform_type MARQ
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positions MADB::GEO
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positions MADB::CustomDS
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process CustomDS
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process_GDS GEO
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process_GSE GEO
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process_platform GEO
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pvalues Score
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r GEO
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r CustomDS
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rankproduct RankProduct
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ranks RankProduct
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rearange GEO
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rootdir MARQ
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save MADB::CustomDS
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saveGPL MADB::GEO
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scale_score1 Score
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score RankProduct
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score_area Score
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score_max Score
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score_max_norm Score
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score_norm_fast Score
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score_scale_fast Score
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score_up_down Score
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scores_up_down MARQ::CustomDSRQ
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#setup FDRTest
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step_up_native FDR
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#test_adjust FDRTest
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#test_step_up FDRTest
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translate_DB ID