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#c_num MS::ChargeCalculator::PepCharges
#c_term MS::ChargeCalculator::PepCharges
#calculate_fragments MS::Fragmenter
#charge MS::Fragmenter::TableEntry
charge_at_pH MS::ChargeCalculator
#charge_state MS
#composition_arr MS::Fragmenter::TableEntry
#d_num MS::ChargeCalculator::PepCharges
#e_num MS::ChargeCalculator::PepCharges
#fragment MS::Fragmenter
#generate_fragment_masses MS::Fragmenter
#graph MS::Fragmenter
#h_num MS::ChargeCalculator::PepCharges
identify_potential_charges MS::ChargeCalculator
#initialize MS::Fragmenter
#ion MS::Fragmenter::TableEntry
#k_num MS::ChargeCalculator::PepCharges
#list MS::Fragmenter
#mass MS::Fragmenter::TableEntry
#n_term MS::ChargeCalculator::PepCharges
#pi MS::ChargeCalculator::PepCharges
#precursor_mass MS
#r_num MS::ChargeCalculator::PepCharges
#seq MS::ChargeCalculator::PepCharges
#seq MS::Fragmenter::TableEntry
#set_options MS::Fragmenter
#to_mgf MS::Fragmenter
#y_num MS::ChargeCalculator::PepCharges