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#alignments BioMummer::DeltaFile
#alternate_filename BioMummer::DeltaFile
#deltas BioMummer::Alignment
#distances BioMummer::Alignment
#format_ok? BioMummer::DeltaFile
#initialize BioMummer::DeltaFile
#initialize BioMummer::Alignment
open BioMummer::DeltaFile
#parse BioMummer::DeltaFile
#qryname BioMummer::Alignment
#qrystart BioMummer::Alignment
#qrystop BioMummer::Alignment
#ref_to_query BioMummer::Alignment
#reference_filename BioMummer::DeltaFile
#refname BioMummer::Alignment
#refstart BioMummer::Alignment
#refstop BioMummer::Alignment
#strand BioMummer::Alignment
#transpose_region BioMummer::DeltaFile