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align_gene_groups BioPangenome
#ann BioPangenome::GeneFlankingRegion
#bedAround MultipleGFFs
#bedAroundGene GFF3
#bedAroundToRegions Top Level Namespace
blast_pair_fast BioPangenome
#calculate_mrna_stats GFF3
#cds_count MrnaStats
#cds_max_gap MrnaStats
#cds_to_print GFF3
#chromosome BioPangenome::Transcript
#color GFF3::CDS_feature
#confidence BioPangenome::Transcript
#count BioPangenome::Transcript
#count_int BioPangenome::Transcript
#each GFF3
#each_cds GFF3
#each_gene GFF3
#each_gff MultipleGFFs
#each_mrna GFF3
#end GFF3::CDS_feature
#flank_length BioPangenome::GeneFlankingRegion
#gene BioPangenome::GeneFlankingRegion
#gene BioPangenome::Transcript
#id BioPangenome::GeneFlankingRegion
#id BioPangenome::Transcript
#initialize GFF3
#initialize MultipleGFFs
#integer? String
#isoform BioPangenome::Transcript
#line BioPangenome::GeneFlankingRegion
#lines_gffs MultipleGFFs
load_cds_sequences BioPangenome
load_genes BioPangenome
load_lines BioPangenome
load_mapping_hash BioPangenome
load_projected_genes BioPangenome
load_sequences_from_hash BioPangenome
#mrna_info GFF3
#offset_start GFF3::CDS_feature
parseEITranscript BioPangenome
parsePGSBTranscript BioPangenome
parseSequenceName BioPangenome
parseTranscript BioPangenome
parse_line_fast Bio::GFFbrowser::FastLineParser
#ref_chr GFF3::CDS_feature
#ref_end GFF3::CDS_feature
#ref_start GFF3::CDS_feature
#region BioPangenome::GeneFlankingRegion
#sequence BioPangenome::GeneFlankingRegion
#start GFF3::CDS_feature
#summary MultipleGFFs
#to_svg MultipleGFFs
#transcript BioPangenome::GeneFlankingRegion
#transcript BioPangenome::Transcript
#version BioPangenome::Transcript