Method List
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#[] BioVcf::VcfRecordInfo
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#[] BioVcf::VcfAltInfoList
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#[] BioVcf::VcfSample::Sample
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#[] BioVcf::VcfGenotypeFields
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#[] BioVcf::VcfNucleotideCount4
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#[]= BioVcf::VcfRecordInfo
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_simple_lexer_actions BioVcf::VcfHeaderParser::RagelKeyValues
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_simple_lexer_eof_actions BioVcf::VcfHeaderParser::RagelKeyValues
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_simple_lexer_index_offsets BioVcf::VcfHeaderParser::RagelKeyValues
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_simple_lexer_key_offsets BioVcf::VcfHeaderParser::RagelKeyValues
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_simple_lexer_range_lengths BioVcf::VcfHeaderParser::RagelKeyValues
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_simple_lexer_single_lengths BioVcf::VcfHeaderParser::RagelKeyValues
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_simple_lexer_trans_actions BioVcf::VcfHeaderParser::RagelKeyValues
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_simple_lexer_trans_keys BioVcf::VcfHeaderParser::RagelKeyValues
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_simple_lexer_trans_targs BioVcf::VcfHeaderParser::RagelKeyValues
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#ad BioVcf::VcfGenotypeField
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#add BioVcf::VcfHeader
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#add BioVcf::VcfStatistics
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#alt BioVcf::VcfRecord
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#amq BioVcf::VcfGenotypeField
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apply_threshold BioVcf::Variant
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#bcount BioVcf::VcfGenotypeField
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#body Bio::Template
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#bq BioVcf::VcfGenotypeField
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#cache_method BioVcf::VcfSample::Sample
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#call_diff BioVcf::VcfRecordCall
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#call_normal_count BioVcf::VcfRecordCall
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#call_nuc BioVcf::VcfRecordCall
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#call_tumor_count BioVcf::VcfRecordCall
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#call_tumor_relative_count BioVcf::VcfRecordCall
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#chrom BioVcf::VcfRecord
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#column_names BioVcf::VcfHeader
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#columns BioVcf::VcfHeader
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#contains BioVcf::BedFilter
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#contig BioVcf::VcfHeader
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convert BioVcf::ConvertStringToValue
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debug BioVcf::VcfHeaderParser::RagelKeyValues
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diff BioVcf::Variant
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#dp4 BioVcf::VcfGenotypeField
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#each_sample BioVcf::VcfRecord
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#efilter BioVcf::VcfSample::Sample
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empty? BioVcf::VcfSample
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empty? BioVcf::VcfValue
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#empty? BioVcf::VcfSample::Sample
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#empty? BioVcf::VcfGenotypeField
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escape_string_literal BioVcf::RDF
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#eval BioVcf::VcfRecord
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#eval BioVcf::VcfSample::Sample
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#field BioVcf::VcfHeader
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#fields BioVcf::VcfRecordInfo
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#filter BioVcf::VcfRecord
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#filter BioVcf::VcfHeader
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#find_field BioVcf::VcfHeader
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#find_fields BioVcf::VcfHeader
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#first BioVcf::VcfRecord
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float? BioVcf::ConvertStringToValue
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#footer Bio::Template
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#format BioVcf::VcfRecord
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#format BioVcf::VcfHeader
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#format BioVcf::VcfGenotypeField
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#gatkcommandline BioVcf::VcfHeader
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get_column_names BioVcf::VcfHeaderParser
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get_format BioVcf::VcfRecordParser
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#get_gt BioVcf::VcfRecordCall
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get_info BioVcf::VcfRecordParser
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#gfilter BioVcf::VcfRecord
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#gti BioVcf::VcfGenotypeField
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#gti BioVcf::VcfSample::Sample
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#gti? BioVcf::VcfGenotypeField
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#gts BioVcf::VcfSample::Sample
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#gts BioVcf::VcfGenotypeField
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#gts? BioVcf::VcfGenotypeField
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#header BioVcf::VcfRecord
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#header BioVcf::VcfGenotypeField
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#header Bio::Template
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header BioVcf::VcfRdf
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#id BioVcf::VcfRecord
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identifier BioVcf::Turtle
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#ids BioVcf::VcfRecord
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#ifilter BioVcf::VcfSample::Sample
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index BioVcf::Variant
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#index BioVcf::VcfRecordCall
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#info BioVcf::VcfRecord
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#info BioVcf::VcfHeader
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#initialize BioVcf::VcfRecord
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#initialize BioVcf::VcfRecordInfo
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#initialize BioVcf::VcfGenotypeFields
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#initialize BioVcf::VcfSample::Sample
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#initialize BioVcf::VcfAltInfoList
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#initialize BioVcf::VcfHeader
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#initialize BioVcf::BedFilter
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#initialize Bio::Template
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#initialize BioVcf::VcfGenotypeField
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#initialize PCOWS
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#initialize BioVcf::VcfStatistics
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#initialize BioVcf::VcfNucleotideCount4
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integer? BioVcf::ConvertStringToValue
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#lines BioVcf::VcfHeader
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mangle_identifier BioVcf::Turtle
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#max BioVcf::VcfAltInfoList
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#max BioVcf::VcfNucleotideCount4
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#meta BioVcf::VcfHeader
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#method_missing BioVcf::VcfRecordInfo
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#method_missing BioVcf::VcfHeader
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#method_missing BioVcf::VcfGenotypeFields
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#method_missing BioVcf::VcfSample::Sample
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#method_missing BioVcf::VcfRecord
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#method_missing BioVcf::VcfGenotypeField
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#min BioVcf::VcfAltInfoList
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#min BioVcf::VcfNucleotideCount4
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#missing_samples? BioVcf::VcfRecord
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#normal BioVcf::VcfRecord
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#num_samples BioVcf::VcfHeader
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parse BioVcf::VcfLine
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#parse Bio::Template
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parse_field BioVcf::VcfHeaderParser
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#pl BioVcf::VcfGenotypeField
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#pos BioVcf::VcfRecord
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#print BioVcf::VcfStatistics
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#printable_header_line BioVcf::VcfHeader
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#process_output PCOWS
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#qual BioVcf::VcfRecord
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quoted_stringify_literal BioVcf::RDF
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record BioVcf::VcfRdf
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#ref BioVcf::VcfRecord
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relative_diff BioVcf::Variant
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relative_threshold_diff BioVcf::Variant
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#result Bio::Template
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run_lexer BioVcf::VcfHeaderParser::RagelKeyValues
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#sample BioVcf::VcfRecord
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#sample_by_index BioVcf::VcfRecord
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#sample_by_name BioVcf::VcfRecord
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#sample_index BioVcf::VcfHeader
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#samples BioVcf::VcfHeader
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#samples_index_array BioVcf::VcfHeader
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#sfilter BioVcf::VcfSample::Sample
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simple_lexer_en_main BioVcf::VcfHeaderParser::RagelKeyValues
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simple_lexer_error BioVcf::VcfHeaderParser::RagelKeyValues
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simple_lexer_first_final BioVcf::VcfHeaderParser::RagelKeyValues
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simple_lexer_start BioVcf::VcfHeaderParser::RagelKeyValues
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stringify_literal BioVcf::Turtle
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stringify_literal BioVcf::RDF
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#submit_worker PCOWS
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#sum BioVcf::VcfNucleotideCount4
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#sum BioVcf::VcfAltInfoList
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#tag BioVcf::VcfHeader
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threshold_diff BioVcf::Variant
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#to_ary BioVcf::VcfAltInfoList
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#to_ary BioVcf::VcfNucleotideCount4
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#to_s BioVcf::VcfRecordInfo
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#to_s BioVcf::VcfGenotypeField
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#tumor BioVcf::VcfRecord
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#valid? BioVcf::VcfRecord
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#valid? BioVcf::VcfGenotypeField
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valid_uri? BioVcf::RDF
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#values BioVcf::VcfGenotypeField
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#version BioVcf::VcfHeader
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#wait_for_worker PCOWS
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#wait_for_worker_slot PCOWS
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#wait_for_workers PCOWS