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#add FuzzBall::Searcher
#add FuzzBall::DupleIndex
#alignment FuzzBall::SmithWaterman
#duple_index FuzzBall::Searcher
#files FuzzBall::Searcher
#files_array FuzzBall::Searcher
#initialize FuzzBall::Searcher
#initialize FuzzBall::SmithWaterman
#inspect FuzzBall::Searcher
#match FuzzBall::DupleIndex
#options FuzzBall::Searcher
#score FuzzBall::SmithWaterman
#search FuzzBall::Searcher