Method List
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#alleles HTS::Bcf::Record
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#alt HTS::Bcf::Record
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attach_function HTS::LibHTS
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bam_cigar_gen HTS::LibHTS
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bam_cigar_op HTS::LibHTS
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bam_cigar_opchr HTS::LibHTS
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bam_cigar_oplen HTS::LibHTS
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bam_cigar_type HTS::LibHTS
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bam_get_aux HTS::LibHTS
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bam_get_cigar HTS::LibHTS
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bam_get_l_aux HTS::LibHTS
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bam_get_qname HTS::LibHTS
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bam_get_qual HTS::LibHTS
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bam_get_seq HTS::LibHTS
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bam_is_mrev HTS::LibHTS
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bam_is_rev HTS::LibHTS
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bam_seqi HTS::LibHTS
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#base_at HTS::Bam::Record
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#base_qualities HTS::Bam::Record
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#base_quality_at HTS::Bam::Record
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bcf_alleles2gt HTS::LibHTS
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bcf_get_format_char HTS::LibHTS
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bcf_get_format_float HTS::LibHTS
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bcf_get_format_int32 HTS::LibHTS
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bcf_get_genotypes HTS::LibHTS
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bcf_get_info_flag HTS::LibHTS
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bcf_get_info_float HTS::LibHTS
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bcf_get_info_int32 HTS::LibHTS
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bcf_get_info_string HTS::LibHTS
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bcf_gt_allele HTS::LibHTS
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bcf_gt_is_missing HTS::LibHTS
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bcf_gt_is_phased HTS::LibHTS
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bcf_gt_missing HTS::LibHTS
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bcf_gt_phased HTS::LibHTS
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bcf_gt_unphased HTS::LibHTS
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bcf_hdr_id2length HTS::LibHTS
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bcf_hdr_id2name HTS::LibHTS
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bcf_hdr_id2number HTS::LibHTS
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bcf_hdr_int2id HTS::LibHTS
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bcf_hdr_name2id HTS::LibHTS
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bcf_hdr_nsamples HTS::LibHTS
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bcf_update_format_char HTS::LibHTS
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bcf_update_format_float HTS::LibHTS
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bcf_update_format_int32 HTS::LibHTS
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bcf_update_genotypes HTS::LibHTS
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bcf_update_info_flag HTS::LibHTS
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bcf_update_info_float HTS::LibHTS
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bcf_update_info_int32 HTS::LibHTS
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bcf_update_info_string HTS::LibHTS
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#build HTS::Tabix
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#cget HTS::Faidx
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#chrom HTS::Bcf::Record
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#chrom HTS::Bam::Record
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#chrom_size HTS::Faidx
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#cigar HTS::Bam::Record
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#close HTS::Faidx
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#close HTS::Bcf
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#close HTS::Bam
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#closed? HTS::Bcf
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#closed? HTS::Bam
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#contig HTS::Bam::Record
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#create_index HTS::Bam
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#dup? HTS::Bam::Flag
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#each HTS::Bcf
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#each HTS::Bam
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#each HTS::Bam::Cigar
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#each_copy HTS::Bam
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#fields HTS::Bcf::Info
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#file_path HTS::Faidx
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#file_path HTS::Bcf
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#file_path HTS::Bam
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#filter HTS::Bcf::Record
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#flag HTS::Bam::Record
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#flag_str HTS::Bam::Record
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#flush HTS::Bam
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#format HTS::Bcf::Record
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#formats HTS::Bcf::Record
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#genotypes HTS::Bcf::Record
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#genotypes HTS::Bcf::Format
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#get HTS::Bcf::Info
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#get HTS::Faidx
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#get HTS::Bcf::Format
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#get_flag HTS::Bcf::Info
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#get_flag HTS::Bcf::Format
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#get_float HTS::Bcf::Info
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#get_float HTS::Bcf::Format
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#get_int HTS::Bcf::Info
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#get_int HTS::Bcf::Format
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#get_string HTS::Bcf::Info
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#get_string HTS::Bcf::Format
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#get_version HTS::Bcf::Header
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#has_flag? HTS::Bam::Flag
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#header HTS::Bcf
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#header HTS::Bam
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#header HTS::Bcf::Record
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#header HTS::Bam::Record
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#id HTS::Bcf::Record
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#info HTS::Bcf::Record
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#initialize HTS::Bcf::Info
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#initialize HTS::Bam::Flag
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#initialize HTS::Bam::Cigar
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#initialize HTS::Faidx
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#initialize HTS::Tabix
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#initialize HTS::Bcf
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#initialize HTS::Bcf::Header
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#initialize HTS::Bam::Record
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#initialize HTS::Bcf::Format
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#initialize HTS::Bam::Header
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#initialize HTS::Bam
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#initialize HTS::Bcf::Record
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#insert_size HTS::Bam::Record
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lib_path HTS
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#mapping_quality HTS::Bam::Record
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#mate_chrom HTS::Bam::Record
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#mate_reverse? HTS::Bam::Flag
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#mate_start HTS::Bam::Record
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#mate_tid HTS::Bam::Record
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#mate_unmapped? HTS::Bam::Flag
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#mode HTS::Bcf
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#mode HTS::Bam
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open HTS::Bcf
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open HTS::Bam
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#paired? HTS::Bam::Flag
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#pos HTS::Bcf::Record
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#proper_pair? HTS::Bam::Flag
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#qcfail? HTS::Bam::Flag
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#qlen HTS::Bam::Record
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#qname HTS::Bam::Record
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#qual HTS::Bcf::Record
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#query HTS::Bam
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#read1? HTS::Bam::Flag
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#read2? HTS::Bam::Flag
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#ref HTS::Bcf::Record
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release HTS::LibHTS::Bcf1
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release HTS::LibHTS::Bam1
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#reverse? HTS::Bam::Flag
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#rlen HTS::Bam::Record
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rom_sam_str HTS::Bam::Record
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sam_itr_next HTS::LibHTS
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#sample_count HTS::Bcf
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#sample_count HTS::Bcf::Header
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#sample_names HTS::Bcf
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#sample_names HTS::Bcf::Header
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search_htslib HTS
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#secondary? HTS::Bam::Flag
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#sequence HTS::Bam::Record
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#sequences HTS::Tabix
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#set HTS::Bcf::Format
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#size HTS::Faidx
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#start HTS::Bam::Record
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#start HTS::Bcf::Record
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#stop HTS::Bam::Record
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#stop HTS::Bcf::Record
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#strand HTS::Bam::Record
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#struct HTS::Bam::Record
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#struct HTS::Bam::Header
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#struct HTS::Bcf
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#struct HTS::Bam
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#struct HTS::Bcf::Record
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#struct HTS::Bcf::Header
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struct_layout FFI::Struct
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#supplementary? HTS::Bam::Flag
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#tag HTS::Bam::Record
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#tags HTS::Bam::Record
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#target_count HTS::Bam::Header
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#target_lengths HTS::Bam::Header
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#target_names HTS::Bam::Header
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#tid HTS::Bam::Record
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#to_ptr HTS::Bam::Record
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#to_ptr HTS::Bam::Header
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#to_ptr HTS::Bam::Cigar
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#to_ptr HTS::Bam
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#to_ptr HTS::Bcf
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#to_ptr HTS::Bcf::Record
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#to_ptr HTS::Bcf::Header
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#to_s HTS::Bcf::Record
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#to_s HTS::Bcf::Header
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#to_s HTS::Bam::Record
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#to_s HTS::Bam::Header
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#to_s HTS::Bam::Cigar
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#to_s HTS::Bam::Flag
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union_layout FFI::Struct
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#unmapped? HTS::Bam::Flag
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#value HTS::Bam::Flag
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#write HTS::Bcf
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#write HTS::Bam
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#write_header HTS::Bcf
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#write_header HTS::Bam