Method List
-
#* Vector
-
#+ Point
-
#+ Vector
-
#README New
-
a2bohr Mddb
-
#atom Mddb::Generators::Atom
-
#calc_rg Mddb::Molecule
-
#calc_sasa Mddb::Molecule
-
#calculations Mddb::Runner
-
#calculations Mddb::Calculations::ClassMethods
-
#charge Mddb::Atom
-
#config New
-
config= Mddb::Config
-
connect Mddb::Config
-
#create GsdSphere
-
database Mddb::Config
-
#dimensions Vector
-
#distance_to Point
-
#distance_to Mddb::Atom
-
#dot Vector
-
#each_frame Mddb::Parser::Parser
-
#end_of_frame? Mddb::Parser::Parser
-
#fine? Mddb::Runner
-
#frame New
-
from_mongo Point
-
from_mongo Vector
-
included Mddb::Calculations
-
#initialize Mddb::Runner
-
#initialize Mddb::Parser::Parser
-
#initialize Mddb::Commands::Run
-
#initialize GsdSphere
-
#length Vector
-
list Mddb::Generators
-
#list_calculations Mddb::Calculations
-
#local Mddb::Commands::Run
-
#mass Mddb::Molecule
-
#mass Mddb::Atom
-
#models New
-
#molecule Mddb::Generators::Molecule
-
#new_frame? Mddb::Parser::Parser
-
#nodes GsdSphere
-
#qsub Mddb::Commands::Run
-
#resque Mddb::Commands::Run
-
#run Mddb::Runner
-
run Mddb
-
run Mddb::CLI
-
#run Mddb::Calculations
-
simulation Mddb::Config
-
source_root Mddb::Generators::Molecule
-
source_root New
-
source_root Mddb::Generators::Atom
-
#spec New
-
start Mddb::Generators::Run
-
#start_console Top Level Namespace
-
#stats_on Mddb::Runner
-
#timeline Mddb::Molecule
-
#timestep Mddb::Molecule
-
#to_3p Point
-
to_mongo Vector
-
to_mongo Point
-
#to_s Vector
-
#to_s Point
-
#unit Vector
-
#vector_to Point
-
#vector_to Mddb::Atom