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add_parent_scan Ms::Msrun
#add_scan_nodes Ms::Msrun::Axml::Mzxml
#compare Ms::Spectrum::Compare
convert Ms::Msrun::Search
#create_scan Ms::Msrun::Axml::Mzxml
digest_mzxml_file Ms::Msrun::Sha1
#each Ms::Msrun::Index
#each_scan Ms::Msrun
#end_time Ms::Msrun
#filename Ms::Msrun
#filetype Ms::Msrun
filetype_and_version Ms::Msrun
#filter Ms::Spectrum::Filter
#filter_by_bins Ms::Spectrum::Filter
#first Ms::Msrun
#first Ms::Msrun::Index
foreach Ms::Msrun
get_parser Ms::Msrun
#get_vals Ms::Msrun::Search
#header_length Ms::Msrun::Index
#index Ms::Msrun
#index_offset Ms::Msrun::Index
#index_to_array Ms::Msrun::Index
#initialize Ms::Msrun::Nokogiri::Mzxml
#initialize Ms::Msrun::Regexp::Mzxml
#initialize Ms::Msrun::Plms1
#initialize Ms::Msrun
#initialize Ms::Msrun::Nokogiri::Mzml
#initialize Ms::Msrun::Index
#intensity Ms::Precursor
#io Ms::Msrun::Nokogiri::Mzxml
#io Ms::Msrun::Nokogiri::Mzml
#io Ms::Msrun::Regexp::Mzxml
#last Ms::Msrun
#last Ms::Msrun::Index
#lazilyGetString Ms::Msrun::Nokogiri::Mzml
#mgf_header Ms::Msrun::Search
#ms2_header Ms::Msrun::Search
#ms_level Ms::Msrun
#msrun Ms::Msrun::Nokogiri::Mzml
#msrun Ms::Msrun::Nokogiri::Mzxml
#msrun Ms::Msrun::Regexp::Mzxml
#msrun_node Ms::Msrun::Axml::Mzxml
#new_scan_from_hash Ms::Msrun::Regexp::Mzxml
#new_scan_from_node Ms::Msrun::Nokogiri::Mzml
#new_scan_from_node Ms::Msrun::Axml::Mzxml
#new_scan_from_node Ms::Msrun::Nokogiri::Mzxml
open Ms::Msrun
#parent Ms::Precursor::LazyParent
#parent_basename Ms::Msrun
parent_basename_and_dir Ms::Mzxml
#parent_basename_noext Ms::Msrun
#parent_location Ms::Msrun
#parse Ms::Msrun::Axml::Mzxml
#parse_header Ms::Msrun::Regexp::Mzxml
#parse_header Ms::Msrun::Nokogiri::Mzml
#parse_header Ms::Msrun::Nokogiri::Mzxml
#parse_ms_level Ms::Msrun::Nokogiri::Mzxml
#parse_ms_level Ms::Msrun::Nokogiri::Mzml
parse_peaks Ms::Msrun::Regexp::Mzxml
parse_precursor Ms::Msrun::Regexp::Mzxml
#parse_scan Ms::Msrun::Nokogiri::Mzxml
#parse_scan Ms::Msrun::Nokogiri::Mzml
parse_scan Ms::Msrun::Regexp::Mzxml
#parser Ms::Msrun
#pic_score Ms::Spectrum::Compare
#precision Ms::Msrun::Nokogiri::Mzml
#read Ms::Msrun::Plms1
#read_float64 Ms::Msrun::Plms1
#read_uint32 Ms::Msrun::Plms1
#scan Ms::Msrun
#scan_count Ms::Msrun
#scan_counts Ms::Msrun
#scan_numbers Ms::Msrun::Plms1
#scan_nums Ms::Msrun::Index
#scan_nums Ms::Msrun
#set_opts Ms::Msrun::Search
#sim_score Ms::Spectrum::Compare
#spectra Ms::Msrun::Plms1
#start_and_end_mz Ms::Msrun
#start_and_end_mz_brute_force Ms::Msrun
#start_end_from_filter_line Ms::Msrun::Nokogiri::Mzxml
#start_end_from_filter_line Ms::Msrun::Nokogiri::Mzml
#start_time Ms::Msrun
#sum Array
#times Ms::Msrun::Plms1
#to_mgf Ms::Msrun::Search
#to_ms2 Ms::Msrun::Search
#to_plms1 Ms::Msrun
#to_search Ms::Msrun::Search
#version Ms::Msrun
#version Ms::Msrun::Nokogiri::Mzxml
#version Ms::Msrun::Nokogiri::Mzml
#version Ms::Msrun::Regexp::Mzxml
#write Ms::Msrun::Plms1
#write_float64 Ms::Msrun::Plms1
#write_uint32 Ms::Msrun::Plms1